RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 TAS2R19P59542 299 aa11.55□□□□□ -0.56
LIMS1-204ENST00000409441 GALK2Q01415 458 aa11.55□□□□□ -0.56
LIMS1-204ENST00000409441 BSPH1Q075Z2 132 aa11.55□□□□□ -0.56
LIMS1-204ENST00000409441 DAZAP2Q15038 168 aaPredicted RBP11.55□□□□□ -0.56
LIMS1-204ENST00000409441 NCMAPQ5T1S8 102 aa11.55□□□□□ -0.56
LIMS1-204ENST00000409441 GLDNQ6ZMI3 551 aaPredicted RBP11.55□□□□□ -0.56
LIMS1-204ENST00000409441 ZNF782Q6ZMW2 699 aaPredicted RBP11.55□□□□□ -0.56
LIMS1-204ENST00000409441 Q6ZSR3 168 aa11.55□□□□□ -0.56
LIMS1-204ENST00000409441 OR2W3Q7Z3T1 314 aa11.55□□□□□ -0.56
LIMS1-204ENST00000409441 OR52N4Q8NGI2 321 aa11.55□□□□□ -0.56
LIMS1-204ENST00000409441 OR4C16Q8NGL9 310 aa11.55□□□□□ -0.56
LIMS1-204ENST00000409441 DACT3Q96B18 629 aaPredicted RBP11.55□□□□□ -0.56
LIMS1-204ENST00000409441 PLPPR2Q96GM1 343 aa11.55□□□□□ -0.56
LIMS1-204ENST00000409441 PGAM5Q96HS1 289 aa11.55□□□□□ -0.56
LIMS1-204ENST00000409441 GPR84Q9NQS5 396 aa11.55□□□□□ -0.56
LIMS1-204ENST00000409441 ZNF222Q9UK12 451 aa11.55□□□□□ -0.56
LIMS1-204ENST00000409441 NPTNQ9Y639 398 aa11.55□□□□□ -0.56
LIMS1-204ENST00000409441 UTP20O75691 2785 aaKnown RBP11.55□□□□□ -0.56
LIMS1-204ENST00000409441 ANKHD1Q8IWZ3 2542 aaKnown RBP11.55□□□□□ -0.56
LIMS1-204ENST00000409441 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.54□□□□□ -0.56
LIMS1-204ENST00000409441 DEFB108AA8MXU0 73 aa11.54□□□□□ -0.56
LIMS1-204ENST00000409441 FABP7O15540 132 aa11.54□□□□□ -0.56
LIMS1-204ENST00000409441 CRYAAP02489 173 aa11.54□□□□□ -0.56
LIMS1-204ENST00000409441 MELTFP08582 738 aa11.54□□□□□ -0.56
LIMS1-204ENST00000409441 ZNF35P13682 527 aa11.54□□□□□ -0.56
LIMS1-204ENST00000409441 COL8A1P27658 744 aa11.54□□□□□ -0.56
LIMS1-204ENST00000409441 OTX1P32242 354 aaPredicted RBP11.54□□□□□ -0.56
LIMS1-204ENST00000409441 QRFPP83859 136 aa11.54□□□□□ -0.56
LIMS1-204ENST00000409441 NAAAQ02083 359 aa11.54□□□□□ -0.56
LIMS1-204ENST00000409441 GUCA2AQ02747 115 aa11.54□□□□□ -0.56
LIMS1-204ENST00000409441 FAM189A2Q15884 450 aa11.54□□□□□ -0.56
LIMS1-204ENST00000409441 TBC1D28Q2M2D7 210 aa11.54□□□□□ -0.56
LIMS1-204ENST00000409441 BEX5Q5H9J7 111 aa11.54□□□□□ -0.56
LIMS1-204ENST00000409441 FAM57BQ71RH2 274 aa11.54□□□□□ -0.56
LIMS1-204ENST00000409441 COMMD2Q86X83 199 aa11.54□□□□□ -0.56
LIMS1-204ENST00000409441 PAQR4Q8N4S7 273 aaPredicted RBP11.54□□□□□ -0.56
LIMS1-204ENST00000409441 OR13C9Q8NGT0 318 aa11.54□□□□□ -0.56
LIMS1-204ENST00000409441 C10orf35Q96D05 121 aa11.54□□□□□ -0.56
LIMS1-204ENST00000409441 SEH1LQ96EE3 360 aa11.54□□□□□ -0.56
LIMS1-204ENST00000409441 PLSCR3Q9NRY6 295 aa11.54□□□□□ -0.56
LIMS1-204ENST00000409441 KCNN3Q9UGI6 736 aa11.54□□□□□ -0.56
LIMS1-204ENST00000409441 FLVCR2Q9UPI3 526 aa11.54□□□□□ -0.56
LIMS1-204ENST00000409441 COL12A1Q99715 3063 aa11.54□□□□□ -0.56
LIMS1-204ENST00000409441 SIAH2O43255 324 aa11.53□□□□□ -0.56
LIMS1-204ENST00000409441 HPXP02790 462 aa11.53□□□□□ -0.56
LIMS1-204ENST00000409441 COX6B1P14854 86 aa11.53□□□□□ -0.56
LIMS1-204ENST00000409441 CALCRP30988 508 aa11.53□□□□□ -0.56
LIMS1-204ENST00000409441 RCVRNP35243 200 aa11.53□□□□□ -0.56
LIMS1-204ENST00000409441 THBS4P35443 961 aa11.53□□□□□ -0.56
LIMS1-204ENST00000409441 ZNF93P35789 620 aaPredicted RBP11.53□□□□□ -0.56
LIMS1-204ENST00000409441 KRTAP27-1Q3LI81 207 aa11.53□□□□□ -0.56
LIMS1-204ENST00000409441 STEAP1BQ6NZ63 245 aa11.53□□□□□ -0.56
LIMS1-204ENST00000409441 UTS2BQ765I0 119 aa11.53□□□□□ -0.56
LIMS1-204ENST00000409441 NAA40Q86UY6 237 aa11.53□□□□□ -0.56
LIMS1-204ENST00000409441 OR5AS1Q8N127 324 aa11.53□□□□□ -0.56
LIMS1-204ENST00000409441 SPICQ8N5J4 248 aa11.53□□□□□ -0.56
LIMS1-204ENST00000409441 OR14K1Q8NGZ2 314 aa11.53□□□□□ -0.56
LIMS1-204ENST00000409441 GRPEL2Q8TAA5 225 aa11.53□□□□□ -0.56
LIMS1-204ENST00000409441 AQP3Q92482 292 aa11.53□□□□□ -0.56
LIMS1-204ENST00000409441 SPTSSAQ969W0 71 aa11.53□□□□□ -0.56
LIMS1-204ENST00000409441 PIK3IP1Q96FE7 263 aa11.53□□□□□ -0.56
LIMS1-204ENST00000409441 CDH20Q9HBT6 801 aa11.53□□□□□ -0.56
LIMS1-204ENST00000409441 ATPIF1Q9UII2 106 aa11.53□□□□□ -0.56
LIMS1-204ENST00000409441 SCP2D1Q9UJQ7 156 aa11.53□□□□□ -0.56
LIMS1-204ENST00000409441 RTTNQ86VV8 2226 aa11.53□□□□□ -0.56
LIMS1-204ENST00000409441 IGHV2OR16-5A0A0B4J2B6 119 aa11.53□□□□□ -0.56
LIMS1-204ENST00000409441 TMEM14DPA8MWL7 114 aa11.53□□□□□ -0.56
LIMS1-204ENST00000409441 ABCD4O14678 606 aa11.53□□□□□ -0.56
LIMS1-204ENST00000409441 CREBL2O60519 120 aaPredicted RBP11.53□□□□□ -0.56
LIMS1-204ENST00000409441 ALX3O95076 343 aa11.53□□□□□ -0.56
LIMS1-204ENST00000409441 CD3EP07766 207 aa11.53□□□□□ -0.56
LIMS1-204ENST00000409441 UBBP0CG47 229 aa11.53□□□□□ -0.56
LIMS1-204ENST00000409441 ZNF626Q68DY1 528 aa11.53□□□□□ -0.56
LIMS1-204ENST00000409441 FAAP20Q6NZ36 180 aa11.53□□□□□ -0.56
LIMS1-204ENST00000409441 BEST4Q8NFU0 473 aa11.53□□□□□ -0.56
LIMS1-204ENST00000409441 FAM71F1Q96KD3 344 aaPredicted RBP11.53□□□□□ -0.56
LIMS1-204ENST00000409441 NKX3-1Q99801 234 aaPredicted RBP11.53□□□□□ -0.56
LIMS1-204ENST00000409441 GINS4Q9BRT9 223 aa11.53□□□□□ -0.56
LIMS1-204ENST00000409441 ZNF319Q9P2F9 582 aa11.53□□□□□ -0.56
LIMS1-204ENST00000409441 EIF3KQ9UBQ5 218 aaKnown RBP11.53□□□□□ -0.56
LIMS1-204ENST00000409441 V9GYS6 101 aa11.53□□□□□ -0.56
LIMS1-204ENST00000409441 ICE1Q9Y2F5 2266 aa11.52□□□□□ -0.57
LIMS1-204ENST00000409441 A6NNC1 897 aa11.52□□□□□ -0.57
LIMS1-204ENST00000409441 CHRM2P08172 466 aa11.52□□□□□ -0.57
LIMS1-204ENST00000409441 VSIG8P0DPA2 414 aa11.52□□□□□ -0.57
LIMS1-204ENST00000409441 SLC2A1P11166 492 aa11.52□□□□□ -0.57
LIMS1-204ENST00000409441 CXCL3P19876 107 aa11.52□□□□□ -0.57
LIMS1-204ENST00000409441 RAD52P43351 418 aa11.52□□□□□ -0.57
LIMS1-204ENST00000409441 UNC119Q13432 240 aa11.52□□□□□ -0.57
LIMS1-204ENST00000409441 ZNF260Q3ZCT1 412 aa11.52□□□□□ -0.57
LIMS1-204ENST00000409441 AWAT2Q6E213 333 aa11.52□□□□□ -0.57
LIMS1-204ENST00000409441 OR10K2Q6IF99 312 aa11.52□□□□□ -0.57
LIMS1-204ENST00000409441 SLC22A25Q6T423 547 aa11.52□□□□□ -0.57
LIMS1-204ENST00000409441 PP6455Q8WZ26 134 aa11.52□□□□□ -0.57
LIMS1-204ENST00000409441 RADILQ96JH8 1075 aa11.52□□□□□ -0.57
LIMS1-204ENST00000409441 SLC25A21Q9BQT8 299 aaPredicted RBP11.52□□□□□ -0.57
LIMS1-204ENST00000409441 ZNF436Q9C0F3 470 aaPredicted RBP11.52□□□□□ -0.57
LIMS1-204ENST00000409441 BEX1Q9HBH7 125 aa11.52□□□□□ -0.57
LIMS1-204ENST00000409441 DLL4Q9NR61 685 aa11.52□□□□□ -0.57
LIMS1-204ENST00000409441 ATP6V1G2-DDX39BF2Z307 99 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 228.2 ms