RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 SPPL3Q8TCT6 385 aa12.13□□□□□ -0.47
USP49-203ENST00000394253 ZDHHC19Q8WVZ1 309 aaPredicted RBP12.13□□□□□ -0.47
USP49-203ENST00000394253 KLRG1Q96E93 195 aa12.13□□□□□ -0.47
USP49-203ENST00000394253 STARD5Q9NSY2 213 aa12.13□□□□□ -0.47
USP49-203ENST00000394253 FURINP09958 794 aa12.13□□□□□ -0.47
USP49-203ENST00000394253 PVRP15151 417 aa12.13□□□□□ -0.47
USP49-203ENST00000394253 GUCD1Q96NT3 240 aa12.13□□□□□ -0.47
USP49-203ENST00000394253 SRP14P37108 136 aaKnown RBP12.13□□□□□ -0.47
USP49-203ENST00000394253 CYB561P49447 251 aa12.13□□□□□ -0.47
USP49-203ENST00000394253 LIPIQ6XZB0 460 aa12.13□□□□□ -0.47
USP49-203ENST00000394253 PRELID3AQ96N28 172 aa12.13□□□□□ -0.47
USP49-203ENST00000394253 TEX101Q9BY14 249 aa12.13□□□□□ -0.47
USP49-203ENST00000394253 MYOM1P52179 1685 aa12.13□□□□□ -0.47
USP49-203ENST00000394253 C5orf49A4QMS7 147 aa12.13□□□□□ -0.47
USP49-203ENST00000394253 PRSS38A1L453 326 aa12.12□□□□□ -0.47
USP49-203ENST00000394253 P2RY2P41231 377 aa12.12□□□□□ -0.47
USP49-203ENST00000394253 GAMTQ14353 236 aa12.12□□□□□ -0.47
USP49-203ENST00000394253 APCDD1Q8J025 514 aa12.12□□□□□ -0.47
USP49-203ENST00000394253 OR8D4Q8NGM9 314 aa12.12□□□□□ -0.47
USP49-203ENST00000394253 NIPSNAP1Q9BPW8 284 aa12.12□□□□□ -0.47
USP49-203ENST00000394253 SMDT1Q9H4I9 107 aa12.12□□□□□ -0.47
USP49-203ENST00000394253 GPR84Q9NQS5 396 aa12.12□□□□□ -0.47
USP49-203ENST00000394253 PRSS50Q9UI38 385 aa12.12□□□□□ -0.47
USP49-203ENST00000394253 MASP2O00187 686 aa12.12□□□□□ -0.47
USP49-203ENST00000394253 TMPRSS11DO60235 418 aa12.12□□□□□ -0.47
USP49-203ENST00000394253 TCTN1Q2MV58 587 aa12.12□□□□□ -0.47
USP49-203ENST00000394253 ASTLQ6HA08 431 aaPredicted RBP12.12□□□□□ -0.47
USP49-203ENST00000394253 RASL12Q9NYN1 266 aa12.12□□□□□ -0.47
USP49-203ENST00000394253 A0A1B0GWA3 101 aa12.12□□□□□ -0.47
USP49-203ENST00000394253 C1orf61Q13536 156 aa12.12□□□□□ -0.47
USP49-203ENST00000394253 NKAIN1Q4KMZ8 207 aa12.12□□□□□ -0.47
USP49-203ENST00000394253 OR52E1Q8NGJ3 308 aa12.12□□□□□ -0.47
USP49-203ENST00000394253 OR1B1Q8NGR6 318 aa12.12□□□□□ -0.47
USP49-203ENST00000394253 PIK3IP1Q96FE7 263 aa12.12□□□□□ -0.47
USP49-203ENST00000394253 USP22Q9UPT9 525 aa12.12□□□□□ -0.47
USP49-203ENST00000394253 ARRDC5A6NEK1 342 aa12.12□□□□□ -0.47
USP49-203ENST00000394253 JKAMPQ9P055 326 aa12.12□□□□□ -0.47
USP49-203ENST00000394253 TMEM30CPA0ZSE6 113 aa12.12□□□□□ -0.47
USP49-203ENST00000394253 ZNF840PA6NDX5 716 aa12.12□□□□□ -0.47
USP49-203ENST00000394253 SIRPB1O00241 398 aa12.12□□□□□ -0.47
USP49-203ENST00000394253 TYMSP04818 313 aa12.12□□□□□ -0.47
USP49-203ENST00000394253 OSR2Q8N2R0 312 aa12.12□□□□□ -0.47
USP49-203ENST00000394253 R4GMQ9 66 aa12.12□□□□□ -0.47
USP49-203ENST00000394253 FIGNL2A6NMB9 653 aa12.12□□□□□ -0.47
USP49-203ENST00000394253 LANCL1O43813 399 aa12.12□□□□□ -0.47
USP49-203ENST00000394253 AQP6Q13520 282 aa12.12□□□□□ -0.47
USP49-203ENST00000394253 AWAT1Q58HT5 328 aa12.12□□□□□ -0.47
USP49-203ENST00000394253 STXBP6Q8NFX7 210 aa12.12□□□□□ -0.47
USP49-203ENST00000394253 CLEC5AQ9NY25 188 aa12.12□□□□□ -0.47
USP49-203ENST00000394253 AMMECR1Q9Y4X0 333 aaPredicted RBP12.12□□□□□ -0.47
USP49-203ENST00000394253 PP6455Q8WZ26 134 aa12.12□□□□□ -0.47
USP49-203ENST00000394253 IER2Q9BTL4 223 aa12.12□□□□□ -0.47
USP49-203ENST00000394253 PEF1Q9UBV8 284 aaKnown RBP12.12□□□□□ -0.47
USP49-203ENST00000394253 EDN1P05305 212 aa12.11□□□□□ -0.47
USP49-203ENST00000394253 LIPFP07098 398 aa12.11□□□□□ -0.47
USP49-203ENST00000394253 TCL1AP56279 114 aa12.11□□□□□ -0.47
USP49-203ENST00000394253 IL13RA2Q14627 380 aa12.11□□□□□ -0.47
USP49-203ENST00000394253 TMEM38BQ9NVV0 291 aa12.11□□□□□ -0.47
USP49-203ENST00000394253 ZNF541Q9H0D2 1346 aa12.11□□□□□ -0.47
USP49-203ENST00000394253 GP1BAP07359 652 aa12.11□□□□□ -0.47
USP49-203ENST00000394253 TNFRSF4P43489 277 aa12.11□□□□□ -0.47
USP49-203ENST00000394253 TWIST1Q15672 202 aa12.11□□□□□ -0.47
USP49-203ENST00000394253 SFTPA2Q8IWL1 248 aa12.11□□□□□ -0.47
USP49-203ENST00000394253 SFTPA1Q8IWL2 248 aa12.11□□□□□ -0.47
USP49-203ENST00000394253 OR8B3Q8NGG8 313 aa12.11□□□□□ -0.47
USP49-203ENST00000394253 SNRNP40Q96DI7 357 aaKnown RBP12.11□□□□□ -0.47
USP49-203ENST00000394253 H3BP45 60 aa12.11□□□□□ -0.47
USP49-203ENST00000394253 IGHA1P01876 353 aa12.11□□□□□ -0.47
USP49-203ENST00000394253 IGHA2P01877 340 aa12.11□□□□□ -0.47
USP49-203ENST00000394253 IL4P05112 153 aa12.11□□□□□ -0.47
USP49-203ENST00000394253 ZXDAP98168 799 aa12.11□□□□□ -0.47
USP49-203ENST00000394253 STPG2Q8N412 459 aa12.11□□□□□ -0.47
USP49-203ENST00000394253 C4AP0C0L4 1744 aa12.11□□□□□ -0.47
USP49-203ENST00000394253 C4BP0C0L5 1744 aa12.11□□□□□ -0.47
USP49-203ENST00000394253 CEBPBP17676 345 aa12.11□□□□□ -0.47
USP49-203ENST00000394253 PWWP2BQ6NUJ5 590 aa12.11□□□□□ -0.47
USP49-203ENST00000394253 IGSF8Q969P0 613 aa12.11□□□□□ -0.47
USP49-203ENST00000394253 ZDHHC16Q969W1 377 aa12.11□□□□□ -0.47
USP49-203ENST00000394253 IL36GQ9NZH8 169 aa12.11□□□□□ -0.47
USP49-203ENST00000394253 ISL2Q96A47 359 aa12.11□□□□□ -0.47
USP49-203ENST00000394253 C12orf49Q9H741 205 aa12.11□□□□□ -0.47
USP49-203ENST00000394253 SLC25A22Q9H936 323 aa12.11□□□□□ -0.47
USP49-203ENST00000394253 TECRQ9NZ01 308 aaKnown RBP12.11□□□□□ -0.47
USP49-203ENST00000394253 CACNG5Q9UF02 275 aa12.11□□□□□ -0.47
USP49-203ENST00000394253 MRPS2Q9Y399 296 aaKnown RBP12.11□□□□□ -0.47
USP49-203ENST00000394253 A0A1B0GV90 55 aa12.11□□□□□ -0.47
USP49-203ENST00000394253 ZNF764Q96H86 408 aaPredicted RBP12.11□□□□□ -0.47
USP49-203ENST00000394253 PDLIM5Q96HC4 596 aaKnown RBP12.11□□□□□ -0.47
USP49-203ENST00000394253 FUT9Q9Y231 359 aa12.11□□□□□ -0.47
USP49-203ENST00000394253 TNRC6AQ8NDV7 1962 aaKnown RBP12.11□□□□□ -0.47
USP49-203ENST00000394253 CCR2P41597 374 aa12.11□□□□□ -0.47
USP49-203ENST00000394253 HAAOP46952 286 aa12.11□□□□□ -0.47
USP49-203ENST00000394253 FUT6P51993 359 aa12.11□□□□□ -0.47
USP49-203ENST00000394253 UBE2L3P68036 154 aaKnown RBP12.11□□□□□ -0.47
USP49-203ENST00000394253 NSUN5P2Q63ZY6 315 aa12.11□□□□□ -0.47
USP49-203ENST00000394253 SSX8Q7RTT4 187 aa12.11□□□□□ -0.47
USP49-203ENST00000394253 SLAMF6Q96DU3 332 aa12.11□□□□□ -0.47
USP49-203ENST00000394253 PRRX2Q99811 253 aa12.11□□□□□ -0.47
USP49-203ENST00000394253 ZNF391Q9UJN7 358 aa12.11□□□□□ -0.47
USP49-203ENST00000394253 ONECUT2O95948 504 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms