RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 PCYT1BQ9Y5K3 369 aaPredicted RBP11.96□□□□□ -0.49
RFFL-201ENST00000315249 LCTP09848 1927 aa11.96□□□□□ -0.49
RFFL-201ENST00000315249 FXYD1O00168 92 aa11.96□□□□□ -0.49
RFFL-201ENST00000315249 IGHV3OR15-7A0A075B7D8 119 aa11.96□□□□□ -0.49
RFFL-201ENST00000315249 HBE1P02100 147 aa11.96□□□□□ -0.49
RFFL-201ENST00000315249 CLDN20P56880 219 aa11.96□□□□□ -0.49
RFFL-201ENST00000315249 DGCR2P98153 550 aa11.96□□□□□ -0.49
RFFL-201ENST00000315249 HLXQ14774 488 aaPredicted RBP11.96□□□□□ -0.49
RFFL-201ENST00000315249 FBXW9Q5XUX1 488 aa11.96□□□□□ -0.49
RFFL-201ENST00000315249 TMPRSS13Q9BYE2 586 aa11.96□□□□□ -0.49
RFFL-201ENST00000315249 RBFOX1Q9NWB1 397 aaKnown RBP11.96□□□□□ -0.49
RFFL-201ENST00000315249 DOCK7Q96N67 2140 aa11.96□□□□□ -0.49
RFFL-201ENST00000315249 NCOR1O75376 2440 aa11.96□□□□□ -0.49
RFFL-201ENST00000315249 CD1EP15812 388 aa11.96□□□□□ -0.49
RFFL-201ENST00000315249 SCPEP1Q9HB40 452 aa11.96□□□□□ -0.49
RFFL-201ENST00000315249 A0A1W2PQD3 144 aa11.96□□□□□ -0.5
RFFL-201ENST00000315249 FCGR3BO75015 233 aa11.96□□□□□ -0.5
RFFL-201ENST00000315249 SNRNP70P08621 437 aaKnown RBP11.96□□□□□ -0.5
RFFL-201ENST00000315249 RELAQ04206 551 aa11.96□□□□□ -0.5
RFFL-201ENST00000315249 MRM1Q6IN84 353 aaKnown RBP11.96□□□□□ -0.5
RFFL-201ENST00000315249 ZAR1Q86SH2 424 aa11.96□□□□□ -0.5
RFFL-201ENST00000315249 PTP4A1Q93096 173 aa11.96□□□□□ -0.5
RFFL-201ENST00000315249 C19orf12Q9NSK7 152 aa11.96□□□□□ -0.5
RFFL-201ENST00000315249 KLRB1Q12918 225 aa11.96□□□□□ -0.5
RFFL-201ENST00000315249 FAHD1Q6P587 224 aa11.96□□□□□ -0.5
RFFL-201ENST00000315249 ALKAL2Q6UX46 152 aa11.96□□□□□ -0.5
RFFL-201ENST00000315249 FDCSPQ8NFU4 85 aa11.96□□□□□ -0.5
RFFL-201ENST00000315249 MARCH1Q8TCQ1 289 aa11.96□□□□□ -0.5
RFFL-201ENST00000315249 SF3B5Q9BWJ5 86 aaKnown RBP11.96□□□□□ -0.5
RFFL-201ENST00000315249 C11orf54Q9H0W9 315 aaPredicted RBP11.96□□□□□ -0.5
RFFL-201ENST00000315249 ST8SIA3O43173 380 aa11.95□□□□□ -0.5
RFFL-201ENST00000315249 PAX6P26367 422 aa11.95□□□□□ -0.5
RFFL-201ENST00000315249 PTGFRP43088 359 aa11.95□□□□□ -0.5
RFFL-201ENST00000315249 CDCP2Q5VXM1 449 aa11.95□□□□□ -0.5
RFFL-201ENST00000315249 FAAP24Q9BTP7 215 aa11.95□□□□□ -0.5
RFFL-201ENST00000315249 MS4A7Q9GZW8 240 aaPredicted RBP11.95□□□□□ -0.5
RFFL-201ENST00000315249 MAGT1Q9H0U3 335 aa11.95□□□□□ -0.5
RFFL-201ENST00000315249 DTX4Q9Y2E6 619 aa11.95□□□□□ -0.5
RFFL-201ENST00000315249 ALPK2Q86TB3 2170 aa11.95□□□□□ -0.5
RFFL-201ENST00000315249 HSBP1L1C9JCN9 74 aa11.95□□□□□ -0.5
RFFL-201ENST00000315249 DNASE2O00115 360 aaPredicted RBP11.95□□□□□ -0.5
RFFL-201ENST00000315249 LRP3O75074 770 aa11.95□□□□□ -0.5
RFFL-201ENST00000315249 GPX5O75715 221 aa11.95□□□□□ -0.5
RFFL-201ENST00000315249 DFFBO76075 338 aa11.95□□□□□ -0.5
RFFL-201ENST00000315249 SLC25A40Q8TBP6 338 aa11.95□□□□□ -0.5
RFFL-201ENST00000315249 SMCO4Q9NRQ5 59 aa11.95□□□□□ -0.5
RFFL-201ENST00000315249 UBE2G1P62253 170 aa11.95□□□□□ -0.5
RFFL-201ENST00000315249 MDP1Q86V88 176 aa11.95□□□□□ -0.5
RFFL-201ENST00000315249 BMI1P35226 326 aa11.95□□□□□ -0.5
RFFL-201ENST00000315249 PSMB3P49720 205 aa11.95□□□□□ -0.5
RFFL-201ENST00000315249 ZNF528Q3MIS6 628 aa11.95□□□□□ -0.5
RFFL-201ENST00000315249 TIPARPQ7Z3E1 657 aaKnown RBP11.95□□□□□ -0.5
RFFL-201ENST00000315249 WDR31Q8NA23 367 aa11.95□□□□□ -0.5
RFFL-201ENST00000315249 CDCA4Q9BXL8 241 aa11.95□□□□□ -0.5
RFFL-201ENST00000315249 C12orf10Q9HB07 376 aa11.95□□□□□ -0.5
RFFL-201ENST00000315249 RAXQ9Y2V3 346 aa11.95□□□□□ -0.5
RFFL-201ENST00000315249 STRAPQ9Y3F4 350 aaKnown RBP11.95□□□□□ -0.5
RFFL-201ENST00000315249 SNTB1Q13884 538 aaKnown RBP11.95□□□□□ -0.5
RFFL-201ENST00000315249 SFT2D1Q8WV19 159 aa11.95□□□□□ -0.5
RFFL-201ENST00000315249 RHNO1Q9BSD3 238 aa11.95□□□□□ -0.5
RFFL-201ENST00000315249 GPR35Q9HC97 309 aa11.95□□□□□ -0.5
RFFL-201ENST00000315249 ADRA2AP08913 450 aa11.95□□□□□ -0.5
RFFL-201ENST00000315249 BRS3P32247 399 aa11.95□□□□□ -0.5
RFFL-201ENST00000315249 TIAL1Q01085 375 aaKnown RBP eCLIP11.95□□□□□ -0.5
RFFL-201ENST00000315249 OR2G3Q8NGZ4 309 aa11.95□□□□□ -0.5
RFFL-201ENST00000315249 FOXJ3Q9UPW0 622 aa11.95□□□□□ -0.5
RFFL-201ENST00000315249 LAMP3Q9UQV4 416 aa11.95□□□□□ -0.5
RFFL-201ENST00000315249 SMLR1H3BR10 107 aa11.94□□□□□ -0.5
RFFL-201ENST00000315249 TAGLNQ01995 201 aaKnown RBP11.94□□□□□ -0.5
RFFL-201ENST00000315249 KCNIP4Q6PIL6 250 aa11.94□□□□□ -0.5
RFFL-201ENST00000315249 TMEM200CA6NKL6 621 aa11.94□□□□□ -0.5
RFFL-201ENST00000315249 CALCRP30988 508 aa11.94□□□□□ -0.5
RFFL-201ENST00000315249 NDFIP1Q9BT67 221 aa11.94□□□□□ -0.5
RFFL-201ENST00000315249 CDIPTO14735 213 aa11.94□□□□□ -0.5
RFFL-201ENST00000315249 OPN1MWP04001 364 aa11.94□□□□□ -0.5
RFFL-201ENST00000315249 OPN1MW2P0DN77 364 aa11.94□□□□□ -0.5
RFFL-201ENST00000315249 OPN1MW3P0DN78 364 aa11.94□□□□□ -0.5
RFFL-201ENST00000315249 DDOQ99489 341 aa11.94□□□□□ -0.5
RFFL-201ENST00000315249 IL36GQ9NZH8 169 aa11.94□□□□□ -0.5
RFFL-201ENST00000315249 CT45A10P0DMU9 189 aa11.94□□□□□ -0.5
RFFL-201ENST00000315249 Q3ZCU0 254 aa11.94□□□□□ -0.5
RFFL-201ENST00000315249 OR6C3Q9NZP0 311 aa11.94□□□□□ -0.5
RFFL-201ENST00000315249 LTBP1Q14766 1721 aa11.94□□□□□ -0.5
RFFL-201ENST00000315249 COX7A2P2O60397 106 aa11.94□□□□□ -0.5
RFFL-201ENST00000315249 LY86O95711 162 aa11.94□□□□□ -0.5
RFFL-201ENST00000315249 OPRK1P41145 380 aa11.94□□□□□ -0.5
RFFL-201ENST00000315249 CCL8P80075 99 aa11.94□□□□□ -0.5
RFFL-201ENST00000315249 FCRL1Q96LA6 429 aa11.94□□□□□ -0.5
RFFL-201ENST00000315249 FGF20Q9NP95 211 aaPredicted RBP11.94□□□□□ -0.5
RFFL-201ENST00000315249 PSENENQ9NZ42 101 aa11.94□□□□□ -0.5
RFFL-201ENST00000315249 CLN8Q9UBY8 286 aa11.94□□□□□ -0.5
RFFL-201ENST00000315249 AHRRA9YTQ3 701 aa11.94□□□□□ -0.5
RFFL-201ENST00000315249 CD3DP04234 171 aa11.94□□□□□ -0.5
RFFL-201ENST00000315249 TFAP2AP05549 437 aa11.94□□□□□ -0.5
RFFL-201ENST00000315249 OR8B12Q8NGG6 310 aa11.94□□□□□ -0.5
RFFL-201ENST00000315249 SIPA1L1O43166 1804 aa11.93□□□□□ -0.5
RFFL-201ENST00000315249 SPTBN1Q01082 2364 aaKnown RBP11.93□□□□□ -0.5
RFFL-201ENST00000315249 ZNHIT1O43257 154 aa11.93□□□□□ -0.5
RFFL-201ENST00000315249 SLC25A35Q3KQZ1 300 aa11.93□□□□□ -0.5
RFFL-201ENST00000315249 CREB3L2Q70SY1 520 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 139.2 ms