RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 NDUFB3O43676 98 aa12.22□□□□□ -0.45
CLN3-213ENST00000565047 CCL1P22362 96 aa12.22□□□□□ -0.45
CLN3-213ENST00000565047 HTR1FP30939 366 aa12.22□□□□□ -0.45
CLN3-213ENST00000565047 CAV3P56539 151 aa12.22□□□□□ -0.45
CLN3-213ENST00000565047 GMFBP60983 142 aa12.22□□□□□ -0.45
CLN3-213ENST00000565047 ISL1P61371 349 aa12.22□□□□□ -0.45
CLN3-213ENST00000565047 RELBQ01201 579 aa12.22□□□□□ -0.45
CLN3-213ENST00000565047 IKZF1Q13422 519 aa12.22□□□□□ -0.45
CLN3-213ENST00000565047 KCTD8Q6ZWB6 473 aa12.22□□□□□ -0.45
CLN3-213ENST00000565047 VMO1Q7Z5L0 202 aa12.22□□□□□ -0.45
CLN3-213ENST00000565047 GID4Q8IVV7 300 aa12.22□□□□□ -0.45
CLN3-213ENST00000565047 TMEM86BQ8N661 226 aa12.22□□□□□ -0.45
CLN3-213ENST00000565047 KIR3DL3Q8N743 410 aa12.22□□□□□ -0.45
CLN3-213ENST00000565047 FAM81AQ8TBF8 368 aa12.22□□□□□ -0.45
CLN3-213ENST00000565047 GATAD2BQ8WXI9 593 aa12.22□□□□□ -0.45
CLN3-213ENST00000565047 LHX4Q969G2 390 aa12.22□□□□□ -0.45
CLN3-213ENST00000565047 UBE2FQ969M7 185 aa12.22□□□□□ -0.45
CLN3-213ENST00000565047 HIST1H2AAQ96QV6 131 aa12.22□□□□□ -0.45
CLN3-213ENST00000565047 CHIAQ9BZP6 476 aa12.22□□□□□ -0.45
CLN3-213ENST00000565047 MOB1AQ9H8S9 216 aa12.22□□□□□ -0.45
CLN3-213ENST00000565047 UNKLQ9H9P5 680 aaKnown RBP12.22□□□□□ -0.45
CLN3-213ENST00000565047 H2AFY2Q9P0M6 372 aaPredicted RBP12.22□□□□□ -0.45
CLN3-213ENST00000565047 OR52A1Q9UKL2 312 aa12.22□□□□□ -0.45
CLN3-213ENST00000565047 IKZF2Q9UKS7 526 aa12.22□□□□□ -0.45
CLN3-213ENST00000565047 SLC22A13Q9Y226 551 aa12.22□□□□□ -0.45
CLN3-213ENST00000565047 A0A0U1RQK1 487 aa12.21□□□□□ -0.45
CLN3-213ENST00000565047 PQLC2LA1A4F0 135 aa12.21□□□□□ -0.45
CLN3-213ENST00000565047 ZNF670-ZNF695F2Z2N8 137 aa12.21□□□□□ -0.45
CLN3-213ENST00000565047 RNASEK-C17orf49H0YIS7 233 aa12.21□□□□□ -0.45
CLN3-213ENST00000565047 DLGAP1O14490 977 aa12.21□□□□□ -0.45
CLN3-213ENST00000565047 NOS1APO75052 506 aaPredicted RBP12.21□□□□□ -0.45
CLN3-213ENST00000565047 MTRF1O75570 445 aaKnown RBP12.21□□□□□ -0.45
CLN3-213ENST00000565047 NRASP01111 189 aa12.21□□□□□ -0.45
CLN3-213ENST00000565047 OR2T7P0C7T2 308 aa12.21□□□□□ -0.45
CLN3-213ENST00000565047 DLX1P56177 255 aa12.21□□□□□ -0.45
CLN3-213ENST00000565047 C1orf122Q6ZSJ8 110 aa12.21□□□□□ -0.45
CLN3-213ENST00000565047 MOB3CQ70IA8 216 aa12.21□□□□□ -0.45
CLN3-213ENST00000565047 LDLRAD3Q86YD5 345 aa12.21□□□□□ -0.45
CLN3-213ENST00000565047 OR51G2Q8NGK0 314 aa12.21□□□□□ -0.45
CLN3-213ENST00000565047 OR2T27Q8NH04 317 aa12.21□□□□□ -0.45
CLN3-213ENST00000565047 SGMS2Q8NHU3 365 aa12.21□□□□□ -0.45
CLN3-213ENST00000565047 EME1Q96AY2 570 aa12.21□□□□□ -0.45
CLN3-213ENST00000565047 TMIGD2Q96BF3 282 aa12.21□□□□□ -0.45
CLN3-213ENST00000565047 SDSLQ96GA7 329 aa12.21□□□□□ -0.45
CLN3-213ENST00000565047 MED30Q96HR3 178 aa12.21□□□□□ -0.45
CLN3-213ENST00000565047 DNAJB11Q9UBS4 358 aa12.21□□□□□ -0.45
CLN3-213ENST00000565047 ENOPH1Q9UHY7 261 aa12.21□□□□□ -0.45
CLN3-213ENST00000565047 ENPP5Q9UJA9 477 aa12.21□□□□□ -0.45
CLN3-213ENST00000565047 MMP24Q9Y5R2 645 aa12.21□□□□□ -0.45
CLN3-213ENST00000565047 SNX5Q9Y5X3 404 aa12.21□□□□□ -0.45
CLN3-213ENST00000565047 PKD1L1Q8TDX9 2849 aa12.2□□□□□ -0.46
CLN3-213ENST00000565047 A0A1B0GVI7 797 aa12.2□□□□□ -0.46
CLN3-213ENST00000565047 FAM181BA6NEQ2 426 aa12.2□□□□□ -0.46
CLN3-213ENST00000565047 DHRS7CA6NNS2 312 aa12.2□□□□□ -0.46
CLN3-213ENST00000565047 POM121CA8CG34 1229 aa12.2□□□□□ -0.46
CLN3-213ENST00000565047 LOC110117498-PIK3R3F6TDL0 507 aa12.2□□□□□ -0.46
CLN3-213ENST00000565047 J3QRE1 110 aa12.2□□□□□ -0.46
CLN3-213ENST00000565047 ALPLP05186 524 aa12.2□□□□□ -0.46
CLN3-213ENST00000565047 GLRA1P23415 457 aa12.2□□□□□ -0.46
CLN3-213ENST00000565047 MPZP25189 248 aa12.2□□□□□ -0.46
CLN3-213ENST00000565047 ACTR3P61158 418 aa12.2□□□□□ -0.46
CLN3-213ENST00000565047 IL13RA1P78552 427 aa12.2□□□□□ -0.46
CLN3-213ENST00000565047 LRRC10Q5BKY1 277 aa12.2□□□□□ -0.46
CLN3-213ENST00000565047 CLVS2Q5SYC1 327 aa12.2□□□□□ -0.46
CLN3-213ENST00000565047 HCP5Q6MZN7 132 aa12.2□□□□□ -0.46
CLN3-213ENST00000565047 SHISA2Q6UWI4 295 aa12.2□□□□□ -0.46
CLN3-213ENST00000565047 CATSPERDQ86XM0 798 aa12.2□□□□□ -0.46
CLN3-213ENST00000565047 CD177Q8N6Q3 437 aa12.2□□□□□ -0.46
CLN3-213ENST00000565047 POC1AQ8NBT0 407 aa12.2□□□□□ -0.46
CLN3-213ENST00000565047 OR8J1Q8NGP2 316 aa12.2□□□□□ -0.46
CLN3-213ENST00000565047 ZNF671Q8TAW3 534 aa12.2□□□□□ -0.46
CLN3-213ENST00000565047 PYDC1Q8WXC3 89 aa12.2□□□□□ -0.46
CLN3-213ENST00000565047 RORBQ92753 470 aa12.2□□□□□ -0.46
CLN3-213ENST00000565047 ZDHHC16Q969W1 377 aa12.2□□□□□ -0.46
CLN3-213ENST00000565047 HES4Q9HCC6 221 aa12.2□□□□□ -0.46
CLN3-213ENST00000565047 RASL12Q9NYN1 266 aa12.2□□□□□ -0.46
CLN3-213ENST00000565047 SLC25A10Q9UBX3 287 aaPredicted RBP12.2□□□□□ -0.46
CLN3-213ENST00000565047 POMT1Q9Y6A1 747 aa12.2□□□□□ -0.46
CLN3-213ENST00000565047 SAC3D1A6NKF1 404 aa12.19□□□□□ -0.46
CLN3-213ENST00000565047 SYNGR1O43759 233 aa12.19□□□□□ -0.46
CLN3-213ENST00000565047 SULT1C4O75897 302 aa12.19□□□□□ -0.46
CLN3-213ENST00000565047 PGA5P0DJD9 388 aa12.19□□□□□ -0.46
CLN3-213ENST00000565047 MDKP21741 143 aaPredicted RBP12.19□□□□□ -0.46
CLN3-213ENST00000565047 IER3P46695 156 aa12.19□□□□□ -0.46
CLN3-213ENST00000565047 ERVK11-1P61568 191 aa12.19□□□□□ -0.46
CLN3-213ENST00000565047 ZNF85Q03923 595 aa12.19□□□□□ -0.46
CLN3-213ENST00000565047 PRB3Q04118 309 aaPredicted RBP12.19□□□□□ -0.46
CLN3-213ENST00000565047 TMED1Q13445 227 aa12.19□□□□□ -0.46
CLN3-213ENST00000565047 PRR31Q5SQ13 230 aa12.19□□□□□ -0.46
CLN3-213ENST00000565047 SLC25A30Q5SVS4 291 aa12.19□□□□□ -0.46
CLN3-213ENST00000565047 BCL2L15Q5TBC7 163 aa12.19□□□□□ -0.46
CLN3-213ENST00000565047 PLCXD3Q63HM9 321 aa12.19□□□□□ -0.46
CLN3-213ENST00000565047 HAGHLQ6PII5 290 aaPredicted RBP12.19□□□□□ -0.46
CLN3-213ENST00000565047 ACP7Q6ZNF0 438 aa12.19□□□□□ -0.46
CLN3-213ENST00000565047 THAP5Q7Z6K1 395 aa12.19□□□□□ -0.46
CLN3-213ENST00000565047 C11orf42Q8N5U0 333 aa12.19□□□□□ -0.46
CLN3-213ENST00000565047 ZNRF1Q8ND25 227 aa12.19□□□□□ -0.46
CLN3-213ENST00000565047 HRASLS5Q96KN8 279 aa12.19□□□□□ -0.46
CLN3-213ENST00000565047 ZNF488Q96MN9 340 aa12.19□□□□□ -0.46
CLN3-213ENST00000565047 TBX5Q99593 518 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms