RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 EFNA4P52798 201 aa17.46■□□□□ 0.39
CLN3-212ENST00000564574 LSM3P62310 102 aaKnown RBP17.46■□□□□ 0.39
CLN3-212ENST00000564574 MRPS11P82912 194 aaKnown RBP17.46■□□□□ 0.39
CLN3-212ENST00000564574 KISS1Q15726 138 aa17.46■□□□□ 0.39
CLN3-212ENST00000564574 PRAMEF6Q5VXH4 476 aa17.46■□□□□ 0.39
CLN3-212ENST00000564574 LURAP1Q96LR2 239 aa17.46■□□□□ 0.39
CLN3-212ENST00000564574 PKIBQ9C010 78 aa17.46■□□□□ 0.39
CLN3-212ENST00000564574 METTL17Q9H7H0 456 aaPredicted RBP17.46■□□□□ 0.39
CLN3-212ENST00000564574 BARX1Q9HBU1 254 aaPredicted RBP17.46■□□□□ 0.39
CLN3-212ENST00000564574 PLEKHA6Q9Y2H5 1048 aa17.46■□□□□ 0.39
CLN3-212ENST00000564574 TEX15Q9BXT5 2789 aa17.46■□□□□ 0.39
CLN3-212ENST00000564574 IGKV1-27A0A075B6S5 117 aa17.45■□□□□ 0.38
CLN3-212ENST00000564574 SMIM31A0A1B0GVY4 71 aa17.45■□□□□ 0.38
CLN3-212ENST00000564574 HPXP02790 462 aa17.45■□□□□ 0.38
CLN3-212ENST00000564574 CD37P11049 281 aa17.45■□□□□ 0.38
CLN3-212ENST00000564574 ADRA2CP18825 462 aa17.45■□□□□ 0.38
CLN3-212ENST00000564574 ZNF93P35789 620 aaPredicted RBP17.45■□□□□ 0.38
CLN3-212ENST00000564574 RANBP1P43487 201 aa17.45■□□□□ 0.38
CLN3-212ENST00000564574 HAAOP46952 286 aa17.45■□□□□ 0.38
CLN3-212ENST00000564574 CTF1Q16619 201 aa17.45■□□□□ 0.38
CLN3-212ENST00000564574 PNLDC1Q8NA58 520 aaKnown RBP17.45■□□□□ 0.38
CLN3-212ENST00000564574 Q8TCH9 128 aa17.45■□□□□ 0.38
CLN3-212ENST00000564574 GPER1Q99527 375 aa17.45■□□□□ 0.38
CLN3-212ENST00000564574 UQCC2Q9BRT2 126 aa17.45■□□□□ 0.38
CLN3-212ENST00000564574 GSX2Q9BZM3 304 aa17.45■□□□□ 0.38
CLN3-212ENST00000564574 RNF167Q9H6Y7 350 aa17.45■□□□□ 0.38
CLN3-212ENST00000564574 GCM1Q9NP62 436 aa17.45■□□□□ 0.38
CLN3-212ENST00000564574 PPP1R3CQ9UQK1 317 aa17.45■□□□□ 0.38
CLN3-212ENST00000564574 CEPT1Q9Y6K0 416 aa17.45■□□□□ 0.38
CLN3-212ENST00000564574 AKAP6Q13023 2319 aa17.44■□□□□ 0.38
CLN3-212ENST00000564574 SHISA3A0PJX4 238 aa17.44■□□□□ 0.38
CLN3-212ENST00000564574 A6NLC8 198 aa17.44■□□□□ 0.38
CLN3-212ENST00000564574 J3QT63 122 aa17.44■□□□□ 0.38
CLN3-212ENST00000564574 RAB3BP20337 219 aa17.44■□□□□ 0.38
CLN3-212ENST00000564574 MPZP25189 248 aa17.44■□□□□ 0.38
CLN3-212ENST00000564574 ZNF181Q2M3W8 571 aa17.44■□□□□ 0.38
CLN3-212ENST00000564574 SPRNQ5BIV9 151 aa17.44■□□□□ 0.38
CLN3-212ENST00000564574 HAGHLQ6PII5 290 aaPredicted RBP17.44■□□□□ 0.38
CLN3-212ENST00000564574 MOGAT3Q86VF5 341 aa17.44■□□□□ 0.38
CLN3-212ENST00000564574 LYPD6Q86Y78 171 aa17.44■□□□□ 0.38
CLN3-212ENST00000564574 SCCPDHQ8NBX0 429 aa17.44■□□□□ 0.38
CLN3-212ENST00000564574 OR11L1Q8NGX0 322 aa17.44■□□□□ 0.38
CLN3-212ENST00000564574 RDH5Q92781 318 aa17.44■□□□□ 0.38
CLN3-212ENST00000564574 HPS1Q92902 700 aa17.44■□□□□ 0.38
CLN3-212ENST00000564574 MBD6Q96DN6 1003 aa17.44■□□□□ 0.38
CLN3-212ENST00000564574 MYOZ1Q9NP98 299 aaPredicted RBP17.44■□□□□ 0.38
CLN3-212ENST00000564574 DLL4Q9NR61 685 aa17.44■□□□□ 0.38
CLN3-212ENST00000564574 POLDIP2Q9Y2S7 368 aa17.44■□□□□ 0.38
CLN3-212ENST00000564574 AK6Q9Y3D8 172 aaKnown RBP17.44■□□□□ 0.38
CLN3-212ENST00000564574 IGHV1-69-2A0A0G2JMI3 117 aa17.43■□□□□ 0.38
CLN3-212ENST00000564574 CDRT1O95170 752 aa17.43■□□□□ 0.38
CLN3-212ENST00000564574 SDC2P34741 201 aa17.43■□□□□ 0.38
CLN3-212ENST00000564574 PTH2RP49190 550 aa17.43■□□□□ 0.38
CLN3-212ENST00000564574 VBP1P61758 197 aa17.43■□□□□ 0.38
CLN3-212ENST00000564574 NCS1P62166 190 aa17.43■□□□□ 0.38
CLN3-212ENST00000564574 IL24Q13007 206 aa17.43■□□□□ 0.38
CLN3-212ENST00000564574 MPPED2Q15777 294 aa17.43■□□□□ 0.38
CLN3-212ENST00000564574 CRIP3Q6Q6R5 217 aa17.43■□□□□ 0.38
CLN3-212ENST00000564574 C11orf53Q8IXP5 236 aa17.43■□□□□ 0.38
CLN3-212ENST00000564574 MKXQ8IYA7 352 aa17.43■□□□□ 0.38
CLN3-212ENST00000564574 JAGN1Q8N5M9 183 aa17.43■□□□□ 0.38
CLN3-212ENST00000564574 ZSCAN4Q8NAM6 433 aaPredicted RBP17.43■□□□□ 0.38
CLN3-212ENST00000564574 OR10Z1Q8NGY1 313 aa17.43■□□□□ 0.38
CLN3-212ENST00000564574 ZNF671Q8TAW3 534 aa17.43■□□□□ 0.38
CLN3-212ENST00000564574 AQP3Q92482 292 aa17.43■□□□□ 0.38
CLN3-212ENST00000564574 SPACA5Q96QH8 159 aa17.43■□□□□ 0.38
CLN3-212ENST00000564574 RBM38Q9H0Z9 239 aaKnown RBP17.43■□□□□ 0.38
CLN3-212ENST00000564574 UFSP2Q9NUQ7 469 aa17.43■□□□□ 0.38
CLN3-212ENST00000564574 C1orf123Q9NWV4 160 aa17.43■□□□□ 0.38
CLN3-212ENST00000564574 V9GY05 133 aa17.43■□□□□ 0.38
CLN3-212ENST00000564574 DCHS2Q6V1P9 2916 aa17.43■□□□□ 0.38
CLN3-212ENST00000564574 LRRC30A6NM36 301 aa17.42■□□□□ 0.38
CLN3-212ENST00000564574 ZNF701M0R085 212 aaPredicted RBP17.42■□□□□ 0.38
CLN3-212ENST00000564574 CDIPTO14735 213 aa17.42■□□□□ 0.38
CLN3-212ENST00000564574 SLC22A1O15245 554 aa17.42■□□□□ 0.38
CLN3-212ENST00000564574 CYB5AP00167 134 aa17.42■□□□□ 0.38
CLN3-212ENST00000564574 IL1AP01583 271 aa17.42■□□□□ 0.38
CLN3-212ENST00000564574 ACAA1P09110 424 aaPredicted RBP17.42■□□□□ 0.38
CLN3-212ENST00000564574 DAOP14920 347 aa17.42■□□□□ 0.38
CLN3-212ENST00000564574 CFHR2P36980 270 aa17.42■□□□□ 0.38
CLN3-212ENST00000564574 ZP1P60852 638 aa17.42■□□□□ 0.38
CLN3-212ENST00000564574 PDZK1IP1Q13113 114 aa17.42■□□□□ 0.38
CLN3-212ENST00000564574 RIN1Q13671 783 aa17.42■□□□□ 0.38
CLN3-212ENST00000564574 HFEQ30201 348 aa17.42■□□□□ 0.38
CLN3-212ENST00000564574 C1orf100Q5SVJ3 147 aa17.42■□□□□ 0.38
CLN3-212ENST00000564574 USP43Q70EL4 1123 aa17.42■□□□□ 0.38
CLN3-212ENST00000564574 ANGPTL5Q86XS5 388 aa17.42■□□□□ 0.38
CLN3-212ENST00000564574 CALHM1Q8IU99 346 aa17.42■□□□□ 0.38
CLN3-212ENST00000564574 SAXO1Q8IYX7 474 aa17.42■□□□□ 0.38
CLN3-212ENST00000564574 LRRC75A-AS1Q8N1F1 130 aa17.42■□□□□ 0.38
CLN3-212ENST00000564574 ISOC1Q96CN7 298 aa17.42■□□□□ 0.38
CLN3-212ENST00000564574 GFI1Q99684 422 aa17.42■□□□□ 0.38
CLN3-212ENST00000564574 IGHV3-64DA0A0J9YX35 117 aa17.41■□□□□ 0.38
CLN3-212ENST00000564574 CCDC160A6NGH7 325 aa17.41■□□□□ 0.38
CLN3-212ENST00000564574 IGHV4-39P01824 125 aa17.41■□□□□ 0.38
CLN3-212ENST00000564574 IRF2P14316 349 aa17.41■□□□□ 0.38
CLN3-212ENST00000564574 TGFBR1P36897 503 aa17.41■□□□□ 0.38
CLN3-212ENST00000564574 SERPINB10P48595 397 aa17.41■□□□□ 0.38
CLN3-212ENST00000564574 POU3F4P49335 361 aa17.41■□□□□ 0.38
CLN3-212ENST00000564574 ATP5J2P56134 94 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms