RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 ZP1P60852 638 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 CYCSP99999 105 aaKnown RBP6.52□□□□□ -1.37
VPS39-204ENST00000561818 PDZK1IP1Q13113 114 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 UNC119Q13432 240 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 RBM39Q14498 530 aaKnown RBP6.52□□□□□ -1.37
VPS39-204ENST00000561818 IL13RA2Q14627 380 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 UBE2V2Q15819 145 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 RSPO1Q2MKA7 263 aaPredicted RBP6.52□□□□□ -1.37
VPS39-204ENST00000561818 SLC22A6Q4U2R8 563 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 ATAD3CQ5T2N8 411 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 C1orf185Q5T7R7 199 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 ZNF626Q68DY1 528 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 MOB1BQ7L9L4 216 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 ASCL5Q7RTU5 278 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 FJX1Q86VR8 437 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 HOGA1Q86XE5 327 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 BPIFB2Q8N4F0 458 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 ACBD4Q8NC06 268 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 OR5H2Q8NGV7 314 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 AKR7LQ8NHP1 331 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 ZFAND1Q8TCF1 268 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 FAM216AQ8WUB2 273 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 ORAI1Q96D31 301 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 ZNF837Q96EG3 531 aaPredicted RBP6.52□□□□□ -1.37
VPS39-204ENST00000561818 LRRC46Q96FV0 321 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 Q96M66 194 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 SELENOIQ9C0D9 397 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 SLA2Q9H6Q3 261 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 C12orf4Q9NQ89 552 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 TREM2Q9NZC2 230 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 LIPGQ9Y5X9 500 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 MUC6Q6W4X9 2439 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 FAM186AA6NE01 2351 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 VPS13AQ96RL7 3174 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 TRAV6A0A075B6T7 132 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 MEIKINA0A087WXM9 373 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 A0A0A6YYJ9 748 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 A0A0B4J2A0 478 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 KIR2DS1A0A191URI9 304 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 LRP5LA4QPB2 252 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 TMEM235A6NFC5 223 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 CD300LBA8K4G0 201 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 VSTM5A8MXK1 200 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 TRAPPC2LH3BP13 241 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 MSTNO14793 375 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 GFRA3O60609 400 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 PDCD6O75340 191 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 B3GALNT1O75752 331 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 IGKV3-15P01624 115 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 HLA-HP01893 362 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 CD3DP04234 171 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 DBHP09172 617 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 PET100P0DJ07 73 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 SULT1A3P0DMM9 295 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 SULT1A4P0DMN0 295 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 TMIGD3P0DMS9 266 aaPredicted RBP6.51□□□□□ -1.37
VPS39-204ENST00000561818 PPP3CBP16298 524 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 AMY2BP19961 511 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 IL32P24001 234 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 BLVRBP30043 206 aaPredicted RBP6.51□□□□□ -1.37
VPS39-204ENST00000561818 NTF4P34130 210 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 KIR2DS4P43632 304 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 EFNB2P52799 333 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 SELENOVP59797 346 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 ARPC4P59998 168 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 FGF12P61328 243 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 ZNF92Q03936 586 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 IL24Q13007 206 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 TNK1Q13470 666 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 KIR2DS1Q14954 304 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 CHRFAM7AQ494W8 412 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 TIMM23BQ5SRD1 257 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 SFRP5Q5T4F7 317 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 TMEM211Q6ICI0 200 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 IDO2Q6ZQW0 420 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 Q6ZS49 121 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 LSRQ86X29 649 aaPredicted RBP6.51□□□□□ -1.37
VPS39-204ENST00000561818 PAQR4Q8N4S7 273 aaPredicted RBP6.51□□□□□ -1.37
VPS39-204ENST00000561818 CNEP1R1Q8N9A8 125 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 OR4K15Q8NH41 348 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 FAM57AQ8TBR7 257 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 ZNF431Q8TF32 576 aaPredicted RBP6.51□□□□□ -1.37
VPS39-204ENST00000561818 ST8SIA4Q92187 359 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 PPP1R14AQ96A00 147 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 ZNF775Q96BV0 537 aaPredicted RBP6.51□□□□□ -1.37
VPS39-204ENST00000561818 MUCL1Q96DR8 90 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 ST6GAL2Q96JF0 529 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 C1orf147Q96MC9 270 aaPredicted RBP6.51□□□□□ -1.37
VPS39-204ENST00000561818 PHB2Q99623 299 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 CLEC4MQ9H2X3 399 aaPredicted RBP6.51□□□□□ -1.37
VPS39-204ENST00000561818 IFT22Q9H7X7 185 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 RAB9BQ9NP90 201 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 ZFP57Q9NU63 452 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 ELOVL5Q9NYP7 299 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 ZNF319Q9P2F9 582 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 SHPKQ9UHJ6 478 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 NPTNQ9Y639 398 aa6.51□□□□□ -1.37
VPS39-204ENST00000561818 CNOT1A5YKK6 2376 aaKnown RBP6.51□□□□□ -1.37
VPS39-204ENST00000561818 GVINP1Q7Z2Y8 2422 aa6.5□□□□□ -1.37
VPS39-204ENST00000561818 RIF1Q5UIP0 2472 aaKnown RBP6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms