RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 OR13C5Q8NGS8 318 aa7.82□□□□□ -1.16
LDLR-210ENST00000559340 Q8TCH9 128 aa7.82□□□□□ -1.16
LDLR-210ENST00000559340 GTF3AQ92664 365 aaKnown RBP7.82□□□□□ -1.16
LDLR-210ENST00000559340 RAB1CQ92928 201 aa7.82□□□□□ -1.16
LDLR-210ENST00000559340 PERPQ96FX8 193 aa7.82□□□□□ -1.16
LDLR-210ENST00000559340 S100A13Q99584 98 aa7.82□□□□□ -1.16
LDLR-210ENST00000559340 FOXC2Q99958 501 aa7.82□□□□□ -1.16
LDLR-210ENST00000559340 PKIBQ9C010 78 aa7.82□□□□□ -1.16
LDLR-210ENST00000559340 CHODLQ9H9P2 273 aa7.82□□□□□ -1.16
LDLR-210ENST00000559340 TAS2R4Q9NYW5 299 aa7.82□□□□□ -1.16
LDLR-210ENST00000559340 RNF7Q9UBF6 113 aa7.82□□□□□ -1.16
LDLR-210ENST00000559340 C2CD3Q4AC94 2353 aa7.82□□□□□ -1.16
LDLR-210ENST00000559340 PRRC2AP48634 2157 aaKnown RBP7.81□□□□□ -1.16
LDLR-210ENST00000559340 TRAV1-2A0A0B4J238 106 aa7.81□□□□□ -1.16
LDLR-210ENST00000559340 A0A1W2PPK0 400 aa7.81□□□□□ -1.16
LDLR-210ENST00000559340 PQLC2LA1A4F0 135 aa7.81□□□□□ -1.16
LDLR-210ENST00000559340 CLDN25C9JDP6 229 aa7.81□□□□□ -1.16
LDLR-210ENST00000559340 J3QT63 122 aa7.81□□□□□ -1.16
LDLR-210ENST00000559340 AIREO43918 545 aa7.81□□□□□ -1.16
LDLR-210ENST00000559340 CDC14BO60729 498 aa7.81□□□□□ -1.16
LDLR-210ENST00000559340 NOL3O60936 208 aaKnown RBP7.81□□□□□ -1.16
LDLR-210ENST00000559340 SC5DO75845 299 aa7.81□□□□□ -1.16
LDLR-210ENST00000559340 IGHV4-39P01824 125 aa7.81□□□□□ -1.16
LDLR-210ENST00000559340 ACAA1P09110 424 aaPredicted RBP7.81□□□□□ -1.16
LDLR-210ENST00000559340 IGFBP3P17936 291 aaPredicted RBP7.81□□□□□ -1.16
LDLR-210ENST00000559340 CFHR2P36980 270 aa7.81□□□□□ -1.16
LDLR-210ENST00000559340 HAAOP46952 286 aa7.81□□□□□ -1.16
LDLR-210ENST00000559340 ALDH3B2P48448 385 aa7.81□□□□□ -1.16
LDLR-210ENST00000559340 BMXP51813 675 aa7.81□□□□□ -1.16
LDLR-210ENST00000559340 ZNF154Q13106 437 aa7.81□□□□□ -1.16
LDLR-210ENST00000559340 KCNJ8Q15842 424 aa7.81□□□□□ -1.16
LDLR-210ENST00000559340 CARTPTQ16568 116 aa7.81□□□□□ -1.16
LDLR-210ENST00000559340 ZNF529Q6P280 563 aa7.81□□□□□ -1.16
LDLR-210ENST00000559340 TMEM91Q6ZNR0 172 aa7.81□□□□□ -1.16
LDLR-210ENST00000559340 MOGAT3Q86VF5 341 aa7.81□□□□□ -1.16
LDLR-210ENST00000559340 TPRA1Q86W33 373 aa7.81□□□□□ -1.16
LDLR-210ENST00000559340 Q8IYB0 196 aa7.81□□□□□ -1.16
LDLR-210ENST00000559340 SAXO1Q8IYX7 474 aa7.81□□□□□ -1.16
LDLR-210ENST00000559340 ZSCAN4Q8NAM6 433 aaPredicted RBP7.81□□□□□ -1.16
LDLR-210ENST00000559340 SCCPDHQ8NBX0 429 aa7.81□□□□□ -1.16
LDLR-210ENST00000559340 OR13F1Q8NGS4 319 aa7.81□□□□□ -1.16
LDLR-210ENST00000559340 TRMT10AQ8TBZ6 339 aaKnown RBP7.81□□□□□ -1.16
LDLR-210ENST00000559340 HPSE2Q8WWQ2 592 aa7.81□□□□□ -1.16
LDLR-210ENST00000559340 FAM168AQ92567 244 aa7.81□□□□□ -1.16
LDLR-210ENST00000559340 CCL17Q92583 94 aa7.81□□□□□ -1.16
LDLR-210ENST00000559340 YIPF6Q96EC8 236 aa7.81□□□□□ -1.16
LDLR-210ENST00000559340 KCTD7Q96MP8 289 aa7.81□□□□□ -1.16
LDLR-210ENST00000559340 TLNRD1Q9H1K6 362 aa7.81□□□□□ -1.16
LDLR-210ENST00000559340 OR51I2Q9H344 312 aa7.81□□□□□ -1.16
LDLR-210ENST00000559340 RHOFQ9HBH0 211 aa7.81□□□□□ -1.16
LDLR-210ENST00000559340 GCM1Q9NP62 436 aa7.81□□□□□ -1.16
LDLR-210ENST00000559340 TMEM106BQ9NUM4 274 aa7.81□□□□□ -1.16
LDLR-210ENST00000559340 UFSP2Q9NUQ7 469 aa7.81□□□□□ -1.16
LDLR-210ENST00000559340 C1orf123Q9NWV4 160 aa7.81□□□□□ -1.16
LDLR-210ENST00000559340 RASL12Q9NYN1 266 aa7.81□□□□□ -1.16
LDLR-210ENST00000559340 POLQO75417 2590 aa7.81□□□□□ -1.16
LDLR-210ENST00000559340 F8P00451 2351 aa7.81□□□□□ -1.16
LDLR-210ENST00000559340 YLPM1P49750 1951 aaKnown RBP7.8□□□□□ -1.16
LDLR-210ENST00000559340 IGKV1-9A0A0C4DH69 117 aa7.8□□□□□ -1.16
LDLR-210ENST00000559340 LOC100506127A0A0U1RQW1 187 aa7.8□□□□□ -1.16
LDLR-210ENST00000559340 LOC100289279A0A1B0GTE1 492 aa7.8□□□□□ -1.16
LDLR-210ENST00000559340 TRAPPC2LH3BP13 241 aa7.8□□□□□ -1.16
LDLR-210ENST00000559340 CDIPTO14735 213 aa7.8□□□□□ -1.16
LDLR-210ENST00000559340 PIN1P1O15428 100 aa7.8□□□□□ -1.16
LDLR-210ENST00000559340 NCR1O76036 304 aa7.8□□□□□ -1.16
LDLR-210ENST00000559340 FSTL3O95633 263 aa7.8□□□□□ -1.16
LDLR-210ENST00000559340 MAS1P04201 325 aa7.8□□□□□ -1.16
LDLR-210ENST00000559340 TFAP2AP05549 437 aa7.8□□□□□ -1.16
LDLR-210ENST00000559340 SLC25A16P16260 332 aa7.8□□□□□ -1.16
LDLR-210ENST00000559340 CPT2P23786 658 aa7.8□□□□□ -1.16
LDLR-210ENST00000559340 COL8A2P25067 703 aa7.8□□□□□ -1.16
LDLR-210ENST00000559340 CALRP27797 417 aaKnown RBP7.8□□□□□ -1.16
LDLR-210ENST00000559340 THBS2P35442 1172 aa7.8□□□□□ -1.16
LDLR-210ENST00000559340 ZNF93P35789 620 aaPredicted RBP7.8□□□□□ -1.16
LDLR-210ENST00000559340 GPR6P46095 362 aaPredicted RBP7.8□□□□□ -1.16
LDLR-210ENST00000559340 CAPZA1P52907 286 aa7.8□□□□□ -1.16
LDLR-210ENST00000559340 IL24Q13007 206 aa7.8□□□□□ -1.16
LDLR-210ENST00000559340 GPR176Q14439 515 aa7.8□□□□□ -1.16
LDLR-210ENST00000559340 KISS1Q15726 138 aa7.8□□□□□ -1.16
LDLR-210ENST00000559340 DDI2Q5TDH0 399 aa7.8□□□□□ -1.16
LDLR-210ENST00000559340 PRAMEF6Q5VXH4 476 aa7.8□□□□□ -1.16
LDLR-210ENST00000559340 C22orf42Q6IC83 251 aa7.8□□□□□ -1.16
LDLR-210ENST00000559340 HAGHLQ6PII5 290 aaPredicted RBP7.8□□□□□ -1.16
LDLR-210ENST00000559340 FIP1L1Q6UN15 594 aaKnown RBP7.8□□□□□ -1.16
LDLR-210ENST00000559340 ANKRD13BQ86YJ7 626 aa7.8□□□□□ -1.16
LDLR-210ENST00000559340 NPRL2Q8WTW4 380 aa7.8□□□□□ -1.16
LDLR-210ENST00000559340 RPL3LQ92901 407 aaKnown RBP7.8□□□□□ -1.16
LDLR-210ENST00000559340 DVL3Q92997 716 aaPredicted RBP7.8□□□□□ -1.16
LDLR-210ENST00000559340 BCL7BQ9BQE9 202 aa7.8□□□□□ -1.16
LDLR-210ENST00000559340 CHCHD6Q9BRQ6 235 aa7.8□□□□□ -1.16
LDLR-210ENST00000559340 UQCC2Q9BRT2 126 aa7.8□□□□□ -1.16
LDLR-210ENST00000559340 PIMREGQ9BSJ6 248 aa7.8□□□□□ -1.16
LDLR-210ENST00000559340 TXNL4BQ9NX01 149 aaKnown RBP7.8□□□□□ -1.16
LDLR-210ENST00000559340 NPTNQ9Y639 398 aa7.8□□□□□ -1.16
LDLR-210ENST00000559340 CSMD1Q96PZ7 3565 aa7.8□□□□□ -1.16
LDLR-210ENST00000559340 WNK2Q9Y3S1 2297 aa7.8□□□□□ -1.16
LDLR-210ENST00000559340 CCDC168Q8NDH2 2452 aa7.79□□□□□ -1.16
LDLR-210ENST00000559340 PPIAL4EA0A075B759 164 aa7.79□□□□□ -1.16
LDLR-210ENST00000559340 TRAV38-1A0A0B4J264 116 aa7.79□□□□□ -1.16
LDLR-210ENST00000559340 PPIAL4DF5H284 164 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms