RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 C5orf34Q96MH7 638 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 NXF5Q9H1B4 397 aaKnown RBP6.75□□□□□ -1.33
LIMA1-216ENST00000552909 KCNE5Q9UJ90 142 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 CELSR2Q9HCU4 2923 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 DOPEY1Q5JWR5 2465 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 C5orf51A6NDU8 294 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 ANKUB1A6NFN9 424 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 CYB5AP00167 134 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 IL2RAP01589 272 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 COX5BP10606 129 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 DAOP14920 347 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 SULT1A1P50225 295 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 IL13RA1P78552 427 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 PPP1R1AQ13522 171 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 RHEBQ15382 184 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 RSU1Q15404 277 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 C21orf62-AS1Q17RA5 79 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 EIPR1Q53HC9 387 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 ACTBL2Q562R1 376 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 HLA-DQA1Q5Y7H0 255 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 BTNL8Q6UX41 500 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 CLEC9AQ6UXN8 241 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 KCTD9Q7L273 389 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 DPPA2Q7Z7J5 298 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 SLC25A42Q86VD7 318 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 TGIF2LXQ8IUE1 241 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 BPIFB2Q8N4F0 458 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 TMEM178AQ8NBL3 297 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 UBAC2Q8NBM4 344 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 OR10G3Q8NGC4 313 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 OR51D1Q8NGF3 324 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 OR10D4PQ8NGN7 298 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 OR5AK2Q8NH90 309 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 PRR7Q8TB68 274 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 ASB17Q8WXJ9 295 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 MAFIPQ8WZ33 124 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 MISP3Q96FF7 219 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 S100A13Q99584 98 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 G6PC3Q9BUM1 346 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 OR2S2Q9NQN1 319 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 PARP11Q9NR21 331 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 MED31Q9Y3C7 131 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 CBY1Q9Y3M2 126 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 NCKAP5O14513 1909 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 C13orf42A0A1B0GVH6 325 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 ZNF736B4DX44 427 aaPredicted RBP6.74□□□□□ -1.33
LIMA1-216ENST00000552909 PSMD9O00233 223 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 ARG1P05089 322 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 DBIP07108 87 aaKnown RBP6.74□□□□□ -1.33
LIMA1-216ENST00000552909 ITGA5P08648 1049 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 ZNF735P0CB33 412 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 MEOX1P50221 254 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 ZNF136P52737 540 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 NDUFA6P56556 154 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 FBXW4P57775 412 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 CYCSP99999 105 aaKnown RBP6.74□□□□□ -1.33
LIMA1-216ENST00000552909 FOXO1Q12778 655 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 GAMTQ14353 236 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 SURF2Q15527 256 aaPredicted RBP6.74□□□□□ -1.33
LIMA1-216ENST00000552909 OR1Q1Q15612 314 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 PRAMEF20Q5VT98 475 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 FAM220AQ7Z4H9 259 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 ZSCAN4Q8NAM6 433 aaPredicted RBP6.74□□□□□ -1.33
LIMA1-216ENST00000552909 CCDC54Q8NEL0 328 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 OR1J1Q8NGS3 322 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 OR13C8Q8NGS7 320 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 OR4C3Q8NH37 302 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 OR4K13Q8NH42 304 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 ZNF417Q8TAU3 575 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 CA5BP1Q8WTZ4 195 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 PMM1Q92871 262 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 SPACA9Q96E40 222 aaPredicted RBP6.74□□□□□ -1.33
LIMA1-216ENST00000552909 SEH1LQ96EE3 360 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 RRNAD1Q96FB5 475 aaKnown RBP6.74□□□□□ -1.33
LIMA1-216ENST00000552909 ZNF559Q9BR84 538 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 SOX7Q9BT81 388 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 C20orf24Q9BUV8 137 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 SYT4Q9H2B2 425 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 PROK2Q9HC23 129 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 SH2D2AQ9NP31 389 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 KCNG2Q9UJ96 466 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 GDF2Q9UK05 429 aaPredicted RBP6.74□□□□□ -1.33
LIMA1-216ENST00000552909 CHCHD2Q9Y6H1 151 aaPredicted RBP6.74□□□□□ -1.33
LIMA1-216ENST00000552909 EXPH5Q8NEV8 1989 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 LOC100509620A0A075B734 347 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 TRBV5-5A0A0J9YX44 114 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 A0A1W2PPE2 198 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 SEC14L6B5MCN3 397 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 NPIPA5E9PKD4 350 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 H7C1Q1 480 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 RPP14O95059 124 aaKnown RBP6.74□□□□□ -1.33
LIMA1-216ENST00000552909 PLGP00747 810 aaPredicted RBP6.74□□□□□ -1.33
LIMA1-216ENST00000552909 SERPINA5P05154 406 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 THBS1P07996 1170 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 TACSTD2P09758 323 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 FBXO45P0C2W1 286 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 VAMP1P23763 118 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 MAS1LP35410 378 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 DNASE1L1P49184 302 aa6.74□□□□□ -1.33
LIMA1-216ENST00000552909 DIO1P49895 249 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms