RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 UTS2BQ765I0 119 aa13.63□□□□□ -0.23
CHMP1A-209ENST00000550872 BIVMQ86UB2 503 aa13.63□□□□□ -0.23
CHMP1A-209ENST00000550872 C19orf18Q8NEA5 215 aa13.63□□□□□ -0.23
CHMP1A-209ENST00000550872 DEFB108BQ8NET1 73 aa13.63□□□□□ -0.23
CHMP1A-209ENST00000550872 TECTBQ96PL2 329 aa13.63□□□□□ -0.23
CHMP1A-209ENST00000550872 TMEM165Q9HC07 324 aa13.63□□□□□ -0.23
CHMP1A-209ENST00000550872 PCDHB10Q9UN67 800 aa13.63□□□□□ -0.23
CHMP1A-209ENST00000550872 PLPP2O43688 288 aa13.62□□□□□ -0.23
CHMP1A-209ENST00000550872 LY6G6DO95868 133 aa13.62□□□□□ -0.23
CHMP1A-209ENST00000550872 CD2P06729 351 aa13.62□□□□□ -0.23
CHMP1A-209ENST00000550872 OCM2P0CE71 109 aa13.62□□□□□ -0.23
CHMP1A-209ENST00000550872 OCMP0CE72 109 aaPredicted RBP13.62□□□□□ -0.23
CHMP1A-209ENST00000550872 CD80P33681 288 aa13.62□□□□□ -0.23
CHMP1A-209ENST00000550872 CFHR2P36980 270 aa13.62□□□□□ -0.23
CHMP1A-209ENST00000550872 HAAOP46952 286 aa13.62□□□□□ -0.23
CHMP1A-209ENST00000550872 FUT6P51993 359 aa13.62□□□□□ -0.23
CHMP1A-209ENST00000550872 LMO4P61968 165 aa13.62□□□□□ -0.23
CHMP1A-209ENST00000550872 HOXA4Q00056 320 aaPredicted RBP13.62□□□□□ -0.23
CHMP1A-209ENST00000550872 TMEM155Q4W5P6 130 aa13.62□□□□□ -0.23
CHMP1A-209ENST00000550872 CYB5R2Q6BCY4 276 aa13.62□□□□□ -0.23
CHMP1A-209ENST00000550872 SFRP4Q6FHJ7 346 aaPredicted RBP13.62□□□□□ -0.23
CHMP1A-209ENST00000550872 HAGHLQ6PII5 290 aaPredicted RBP13.62□□□□□ -0.23
CHMP1A-209ENST00000550872 CLEC9AQ6UXN8 241 aa13.62□□□□□ -0.23
CHMP1A-209ENST00000550872 ZNF573Q86YE8 665 aa13.62□□□□□ -0.23
CHMP1A-209ENST00000550872 SERPINA12Q8IW75 414 aa13.62□□□□□ -0.23
CHMP1A-209ENST00000550872 MUC20Q8N307 709 aaPredicted RBP13.62□□□□□ -0.23
CHMP1A-209ENST00000550872 SPICQ8N5J4 248 aa13.62□□□□□ -0.23
CHMP1A-209ENST00000550872 GCSAMQ8N6F7 178 aa13.62□□□□□ -0.23
CHMP1A-209ENST00000550872 OR5D14Q8NGL3 314 aa13.62□□□□□ -0.23
CHMP1A-209ENST00000550872 OR13C5Q8NGS8 318 aa13.62□□□□□ -0.23
CHMP1A-209ENST00000550872 OR13C9Q8NGT0 318 aa13.62□□□□□ -0.23
CHMP1A-209ENST00000550872 OR10Z1Q8NGY1 313 aa13.62□□□□□ -0.23
CHMP1A-209ENST00000550872 BORCS8Q96FH0 119 aa13.62□□□□□ -0.23
CHMP1A-209ENST00000550872 PGLYRP3Q96LB9 341 aa13.62□□□□□ -0.23
CHMP1A-209ENST00000550872 GSX1Q9H4S2 264 aaPredicted RBP13.62□□□□□ -0.23
CHMP1A-209ENST00000550872 ZCCHC4Q9H5U6 513 aa13.62□□□□□ -0.23
CHMP1A-209ENST00000550872 ZNF665Q9H7R5 613 aa13.62□□□□□ -0.23
CHMP1A-209ENST00000550872 ABCA2Q9BZC7 2435 aa13.62□□□□□ -0.23
CHMP1A-209ENST00000550872 LGALS8O00214 317 aa13.61□□□□□ -0.23
CHMP1A-209ENST00000550872 LHBP01229 141 aa13.61□□□□□ -0.23
CHMP1A-209ENST00000550872 CD1AP06126 327 aa13.61□□□□□ -0.23
CHMP1A-209ENST00000550872 HSMCR30P0CW71 290 aa13.61□□□□□ -0.23
CHMP1A-209ENST00000550872 IGHV4-31P0DP07 118 aa13.61□□□□□ -0.23
CHMP1A-209ENST00000550872 EGR1P18146 543 aa13.61□□□□□ -0.23
CHMP1A-209ENST00000550872 PRKACBP22694 351 aa13.61□□□□□ -0.23
CHMP1A-209ENST00000550872 GZMKP49863 264 aa13.61□□□□□ -0.23
CHMP1A-209ENST00000550872 YIF1BQ5BJH7 314 aa13.61□□□□□ -0.23
CHMP1A-209ENST00000550872 ANGPTL5Q86XS5 388 aa13.61□□□□□ -0.23
CHMP1A-209ENST00000550872 PARP16Q8N5Y8 322 aa13.61□□□□□ -0.23
CHMP1A-209ENST00000550872 ZNF671Q8TAW3 534 aa13.61□□□□□ -0.23
CHMP1A-209ENST00000550872 AQP3Q92482 292 aa13.61□□□□□ -0.23
CHMP1A-209ENST00000550872 RAB39BQ96DA2 213 aa13.61□□□□□ -0.23
CHMP1A-209ENST00000550872 NEK6Q9HC98 313 aa13.61□□□□□ -0.23
CHMP1A-209ENST00000550872 LRRC42Q9Y546 428 aa13.61□□□□□ -0.23
CHMP1A-209ENST00000550872 NAV3Q8IVL0 2385 aa13.61□□□□□ -0.23
CHMP1A-209ENST00000550872 VPS13CQ709C8 3753 aa13.61□□□□□ -0.23
CHMP1A-209ENST00000550872 IGKV1-9A0A0C4DH69 117 aa13.6□□□□□ -0.23
CHMP1A-209ENST00000550872 TRBV5-5A0A0J9YX44 114 aa13.6□□□□□ -0.23
CHMP1A-209ENST00000550872 C3orf80F5H4A9 247 aa13.6□□□□□ -0.23
CHMP1A-209ENST00000550872 AKR7A2O43488 359 aa13.6□□□□□ -0.23
CHMP1A-209ENST00000550872 MRPS14O60783 128 aaKnown RBP13.6□□□□□ -0.23
CHMP1A-209ENST00000550872 RHBDL1O75783 438 aa13.6□□□□□ -0.23
CHMP1A-209ENST00000550872 FSTL3O95633 263 aa13.6□□□□□ -0.23
CHMP1A-209ENST00000550872 IGHV2-5P01817 119 aa13.6□□□□□ -0.23
CHMP1A-209ENST00000550872 AZGP1P25311 298 aaKnown RBP13.6□□□□□ -0.23
CHMP1A-209ENST00000550872 ATP1B3P54709 279 aa13.6□□□□□ -0.23
CHMP1A-209ENST00000550872 GMFBP60983 142 aa13.6□□□□□ -0.23
CHMP1A-209ENST00000550872 TBCEQ15813 527 aaPredicted RBP13.6□□□□□ -0.23
CHMP1A-209ENST00000550872 Q499Y3 187 aa13.6□□□□□ -0.23
CHMP1A-209ENST00000550872 DNAAF1Q8NEP3 725 aa13.6□□□□□ -0.23
CHMP1A-209ENST00000550872 TMEM106AQ96A25 262 aa13.6□□□□□ -0.23
CHMP1A-209ENST00000550872 TMEM246Q9BRR3 403 aa13.6□□□□□ -0.23
CHMP1A-209ENST00000550872 PATZ1Q9HBE1 687 aaKnown RBP13.6□□□□□ -0.23
CHMP1A-209ENST00000550872 IGKV1-27A0A075B6S5 117 aa13.59□□□□□ -0.23
CHMP1A-209ENST00000550872 IGHV3OR15-7A0A075B7D8 119 aa13.59□□□□□ -0.23
CHMP1A-209ENST00000550872 TRAV38-1A0A0B4J264 116 aa13.59□□□□□ -0.23
CHMP1A-209ENST00000550872 OOEPA6NGQ2 149 aa13.59□□□□□ -0.23
CHMP1A-209ENST00000550872 SRRM5B3KS81 715 aa13.59□□□□□ -0.23
CHMP1A-209ENST00000550872 FAM157AC9JC47 383 aa13.59□□□□□ -0.23
CHMP1A-209ENST00000550872 J3QT63 122 aa13.59□□□□□ -0.23
CHMP1A-209ENST00000550872 SULT1B1O43704 296 aa13.59□□□□□ -0.23
CHMP1A-209ENST00000550872 SYNGR1O43759 233 aa13.59□□□□□ -0.23
CHMP1A-209ENST00000550872 RBP2P50120 134 aa13.59□□□□□ -0.23
CHMP1A-209ENST00000550872 MTCP1P56278 107 aa13.59□□□□□ -0.23
CHMP1A-209ENST00000550872 RPS11P62280 158 aaKnown RBP eCLIP13.59□□□□□ -0.23
CHMP1A-209ENST00000550872 KRTAP1-1Q07627 177 aa13.59□□□□□ -0.23
CHMP1A-209ENST00000550872 KCNJ8Q15842 424 aa13.59□□□□□ -0.23
CHMP1A-209ENST00000550872 ZNF404Q494X3 552 aa13.59□□□□□ -0.23
CHMP1A-209ENST00000550872 LHFPL2Q6ZUX7 228 aa13.59□□□□□ -0.23
CHMP1A-209ENST00000550872 SVOPQ8N4V2 548 aa13.59□□□□□ -0.23
CHMP1A-209ENST00000550872 UFD1Q92890 307 aa13.59□□□□□ -0.23
CHMP1A-209ENST00000550872 SPSB1Q96BD6 273 aa13.59□□□□□ -0.23
CHMP1A-209ENST00000550872 MSI2Q96DH6 328 aaKnown RBP13.59□□□□□ -0.23
CHMP1A-209ENST00000550872 OPALINQ96PE5 141 aa13.59□□□□□ -0.23
CHMP1A-209ENST00000550872 MGLLQ99685 303 aa13.59□□□□□ -0.23
CHMP1A-209ENST00000550872 ISYNA1Q9NPH2 558 aa13.59□□□□□ -0.23
CHMP1A-209ENST00000550872 MIOXQ9UGB7 285 aa13.59□□□□□ -0.23
CHMP1A-209ENST00000550872 POLDIP2Q9Y2S7 368 aa13.59□□□□□ -0.23
CHMP1A-209ENST00000550872 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.59□□□□□ -0.238e-9■■■□□ 15.7
CHMP1A-209ENST00000550872 MALRD1Q5VYJ5 2156 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms