RNA–Protein interactions for RNA: ENST00000540475.5

SEMA4D-223, Transcript of semaphorin 4D, human

TSL 3

Gene SEMA4D, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SEMA4D-223	ENST00000540475	NLK	Q9UBE8	527 aa		10.76	□□□□□ -0.69
SEMA4D-223	ENST00000540475	MAB21L2	Q9Y586	359 aa		10.76	□□□□□ -0.69
SEMA4D-223	ENST00000540475		V9GYS6	101 aa		10.76	□□□□□ -0.69
SEMA4D-223	ENST00000540475	IGKV1D-17	A0A075B6S4	117 aa		10.75	□□□□□ -0.69
SEMA4D-223	ENST00000540475		A0A1B0GTI1	187 aa		10.75	□□□□□ -0.69
SEMA4D-223	ENST00000540475	CLPSL1	A2RUU4	121 aa		10.75	□□□□□ -0.69
SEMA4D-223	ENST00000540475	NKX6-3	A6NJ46	265 aa		10.75	□□□□□ -0.69
SEMA4D-223	ENST00000540475	DHRS7C	A6NNS2	312 aa		10.75	□□□□□ -0.69
SEMA4D-223	ENST00000540475	MRPL3	P09001	348 aa	Known RBP	10.75	□□□□□ -0.69
SEMA4D-223	ENST00000540475	SELL	P14151	372 aa		10.75	□□□□□ -0.69
SEMA4D-223	ENST00000540475	GLRA1	P23415	457 aa		10.75	□□□□□ -0.69
SEMA4D-223	ENST00000540475	OMG	P23515	440 aa		10.75	□□□□□ -0.69
SEMA4D-223	ENST00000540475	EGR3	Q06889	387 aa		10.75	□□□□□ -0.69
SEMA4D-223	ENST00000540475	IKZF1	Q13422	519 aa		10.75	□□□□□ -0.69
SEMA4D-223	ENST00000540475	ZNF829	Q3KNS6	432 aa	Predicted RBP	10.75	□□□□□ -0.69
SEMA4D-223	ENST00000540475	OLFML2A	Q68BL7	652 aa		10.75	□□□□□ -0.69
SEMA4D-223	ENST00000540475	ELMOD2	Q8IZ81	293 aa		10.75	□□□□□ -0.69
SEMA4D-223	ENST00000540475	OR51E1	Q8TCB6	317 aa		10.75	□□□□□ -0.69
SEMA4D-223	ENST00000540475	WFDC12	Q8WWY7	111 aa		10.75	□□□□□ -0.69
SEMA4D-223	ENST00000540475	CITED1	Q99966	193 aa		10.75	□□□□□ -0.69
SEMA4D-223	ENST00000540475	KRT84	Q9NSB2	600 aa		10.75	□□□□□ -0.69
SEMA4D-223	ENST00000540475	SNTG1	Q9NSN8	517 aa		10.75	□□□□□ -0.69
SEMA4D-223	ENST00000540475	CLN6	Q9NWW5	311 aa		10.75	□□□□□ -0.69
SEMA4D-223	ENST00000540475	DNAJB11	Q9UBS4	358 aa		10.75	□□□□□ -0.69
SEMA4D-223	ENST00000540475	SLC25A10	Q9UBX3	287 aa	Predicted RBP	10.75	□□□□□ -0.69
SEMA4D-223	ENST00000540475	ENPP5	Q9UJA9	477 aa		10.75	□□□□□ -0.69
SEMA4D-223	ENST00000540475	TRBV23-1	A0A0A0MS06	115 aa		10.74	□□□□□ -0.69
SEMA4D-223	ENST00000540475	DLGAP1	O14490	977 aa		10.74	□□□□□ -0.69
SEMA4D-223	ENST00000540475	MITF	O75030	526 aa	Predicted RBP	10.74	□□□□□ -0.69
SEMA4D-223	ENST00000540475	MTRF1	O75570	445 aa	Known RBP	10.74	□□□□□ -0.69
SEMA4D-223	ENST00000540475	IGHV4-59	P01825	116 aa		10.74	□□□□□ -0.69
SEMA4D-223	ENST00000540475	CRYBA1	P05813	215 aa		10.74	□□□□□ -0.69
SEMA4D-223	ENST00000540475	CCL1	P22362	96 aa		10.74	□□□□□ -0.69
SEMA4D-223	ENST00000540475	FAS	P25445	335 aa		10.74	□□□□□ -0.69
SEMA4D-223	ENST00000540475	UBE2E1	P51965	193 aa		10.74	□□□□□ -0.69
SEMA4D-223	ENST00000540475	ACTR3	P61158	418 aa		10.74	□□□□□ -0.69
SEMA4D-223	ENST00000540475	MFGE8	Q08431	387 aa	Predicted RBP	10.74	□□□□□ -0.69
SEMA4D-223	ENST00000540475	ACSM1	Q08AH1	577 aa		10.74	□□□□□ -0.69
SEMA4D-223	ENST00000540475	CEP78	Q5JTW2	689 aa		10.74	□□□□□ -0.69
SEMA4D-223	ENST00000540475	ZNF684	Q5T5D7	378 aa		10.74	□□□□□ -0.69
SEMA4D-223	ENST00000540475	ZNF322	Q6U7Q0	402 aa	Predicted RBP	10.74	□□□□□ -0.69
SEMA4D-223	ENST00000540475	KCTD8	Q6ZWB6	473 aa		10.74	□□□□□ -0.69
SEMA4D-223	ENST00000540475	BCDIN3D	Q7Z5W3	292 aa	Known RBP	10.74	□□□□□ -0.69
SEMA4D-223	ENST00000540475	THAP5	Q7Z6K1	395 aa		10.74	□□□□□ -0.69
SEMA4D-223	ENST00000540475	TCEANC	Q8N8B7	351 aa		10.74	□□□□□ -0.69
SEMA4D-223	ENST00000540475	ZSCAN4	Q8NAM6	433 aa	Predicted RBP	10.74	□□□□□ -0.69
SEMA4D-223	ENST00000540475	POC1A	Q8NBT0	407 aa		10.74	□□□□□ -0.69
SEMA4D-223	ENST00000540475	OR14K1	Q8NGZ2	314 aa		10.74	□□□□□ -0.69
SEMA4D-223	ENST00000540475	FAM81A	Q8TBF8	368 aa		10.74	□□□□□ -0.69
SEMA4D-223	ENST00000540475	DPAGT1	Q9H3H5	408 aa		10.74	□□□□□ -0.69
SEMA4D-223	ENST00000540475	ZNRD1	Q9P1U0	126 aa		10.74	□□□□□ -0.69
SEMA4D-223	ENST00000540475	ONECUT1	Q9UBC0	465 aa		10.74	□□□□□ -0.69
SEMA4D-223	ENST00000540475	MRM2	Q9UI43	246 aa	Known RBP	10.74	□□□□□ -0.69
SEMA4D-223	ENST00000540475	PIGL	Q9Y2B2	252 aa		10.74	□□□□□ -0.69
SEMA4D-223	ENST00000540475	CAB39	Q9Y376	341 aa	Predicted RBP	10.74	□□□□□ -0.69
SEMA4D-223	ENST00000540475		R4GMQ9	66 aa		10.74	□□□□□ -0.69
SEMA4D-223	ENST00000540475	PRKDC	P78527	4128 aa	Known RBP	10.73	□□□□□ -0.69
SEMA4D-223	ENST00000540475	NPFF	O15130	113 aa		10.73	□□□□□ -0.69
SEMA4D-223	ENST00000540475	WIPF1	O43516	503 aa		10.73	□□□□□ -0.69
SEMA4D-223	ENST00000540475	GPR137B	O60478	399 aa		10.73	□□□□□ -0.69
SEMA4D-223	ENST00000540475	ATP5H	O75947	161 aa		10.73	□□□□□ -0.69
SEMA4D-223	ENST00000540475	CLPX	O76031	633 aa		10.73	□□□□□ -0.69
SEMA4D-223	ENST00000540475	KNG1	P01042	644 aa		10.73	□□□□□ -0.69
SEMA4D-223	ENST00000540475	NRAS	P01111	189 aa		10.73	□□□□□ -0.69
SEMA4D-223	ENST00000540475	TFF1	P04155	84 aa		10.73	□□□□□ -0.69
SEMA4D-223	ENST00000540475	FBP1	P09467	338 aa		10.73	□□□□□ -0.69
SEMA4D-223	ENST00000540475	PGA5	P0DJD9	388 aa		10.73	□□□□□ -0.69
SEMA4D-223	ENST00000540475	FAH	P16930	419 aa		10.73	□□□□□ -0.69
SEMA4D-223	ENST00000540475	MPZ	P25189	248 aa		10.73	□□□□□ -0.69
SEMA4D-223	ENST00000540475	RASSF2	P50749	326 aa		10.73	□□□□□ -0.69
SEMA4D-223	ENST00000540475	CXCR4	P61073	352 aa		10.73	□□□□□ -0.69
SEMA4D-223	ENST00000540475	TAF9	Q16594	264 aa		10.73	□□□□□ -0.69
SEMA4D-223	ENST00000540475	NCR3LG1	Q68D85	454 aa		10.73	□□□□□ -0.69
SEMA4D-223	ENST00000540475	HCP5	Q6MZN7	132 aa		10.73	□□□□□ -0.69
SEMA4D-223	ENST00000540475	TREML4	Q6UXN2	200 aa		10.73	□□□□□ -0.69
SEMA4D-223	ENST00000540475	ACP7	Q6ZNF0	438 aa		10.73	□□□□□ -0.69
SEMA4D-223	ENST00000540475	GDPGP1	Q6ZNW5	385 aa		10.73	□□□□□ -0.69
SEMA4D-223	ENST00000540475	MOB3C	Q70IA8	216 aa		10.73	□□□□□ -0.69
SEMA4D-223	ENST00000540475	ZDHHC13	Q8IUH4	622 aa		10.73	□□□□□ -0.69
SEMA4D-223	ENST00000540475	GID4	Q8IVV7	300 aa		10.73	□□□□□ -0.69
SEMA4D-223	ENST00000540475	SLC35F2	Q8IXU6	374 aa		10.73	□□□□□ -0.69
SEMA4D-223	ENST00000540475	ZNRF1	Q8ND25	227 aa		10.73	□□□□□ -0.69
SEMA4D-223	ENST00000540475	LINC01006	Q8NI28	216 aa		10.73	□□□□□ -0.69
SEMA4D-223	ENST00000540475	LRTOMT	Q8WZ04	291 aa		10.73	□□□□□ -0.69
SEMA4D-223	ENST00000540475	AJUBA	Q96IF1	538 aa		10.73	□□□□□ -0.69
SEMA4D-223	ENST00000540475	APOL4	Q9BPW4	351 aa		10.73	□□□□□ -0.69
SEMA4D-223	ENST00000540475	C16orf95	Q9H693	158 aa		10.73	□□□□□ -0.69
SEMA4D-223	ENST00000540475	METTL8	Q9H825	291 aa	Known RBP	10.73	□□□□□ -0.69
SEMA4D-223	ENST00000540475	HES4	Q9HCC6	221 aa		10.73	□□□□□ -0.69
SEMA4D-223	ENST00000540475	SIRT7	Q9NRC8	400 aa		10.73	□□□□□ -0.69
SEMA4D-223	ENST00000540475	H2AFY2	Q9P0M6	372 aa	Predicted RBP	10.73	□□□□□ -0.69
SEMA4D-223	ENST00000540475	ENOPH1	Q9UHY7	261 aa		10.73	□□□□□ -0.69
SEMA4D-223	ENST00000540475	OR52A1	Q9UKL2	312 aa		10.73	□□□□□ -0.69
SEMA4D-223	ENST00000540475	AP4S1	Q9Y587	144 aa		10.73	□□□□□ -0.69
SEMA4D-223	ENST00000540475	SNX5	Q9Y5X3	404 aa		10.73	□□□□□ -0.69
SEMA4D-223	ENST00000540475	PQLC2L	A1A4F0	135 aa		10.72	□□□□□ -0.69
SEMA4D-223	ENST00000540475	LOC110117498-PIK3R3	F6TDL0	507 aa		10.72	□□□□□ -0.69
SEMA4D-223	ENST00000540475	FCGR1A	P12314	374 aa		10.72	□□□□□ -0.69
SEMA4D-223	ENST00000540475	PROK1	P58294	105 aa		10.72	□□□□□ -0.69
SEMA4D-223	ENST00000540475	GMFB	P60983	142 aa		10.72	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms