RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 NEDD8Q15843 81 aa17.05■□□□□ 0.32
USP53-208ENST00000514305 SYT6Q5T7P8 510 aaPredicted RBP17.05■□□□□ 0.32
USP53-208ENST00000514305 C1orf87Q8N0U7 546 aa17.05■□□□□ 0.32
USP53-208ENST00000514305 OR11L1Q8NGX0 322 aa17.05■□□□□ 0.32
USP53-208ENST00000514305 OR5P3Q8WZ94 311 aa17.05■□□□□ 0.32
USP53-208ENST00000514305 TMED9Q9BVK6 235 aa17.05■□□□□ 0.32
USP53-208ENST00000514305 MRPS26Q9BYN8 205 aaKnown RBP17.05■□□□□ 0.32
USP53-208ENST00000514305 FN3KRPQ9HA64 309 aa17.05■□□□□ 0.32
USP53-208ENST00000514305 PPP1R3CQ9UQK1 317 aa17.05■□□□□ 0.32
USP53-208ENST00000514305 IGHV1-69-2A0A0G2JMI3 117 aa17.04■□□□□ 0.32
USP53-208ENST00000514305 TRBV5-5A0A0J9YX44 114 aa17.04■□□□□ 0.32
USP53-208ENST00000514305 RNF212BA8MTL3 300 aa17.04■□□□□ 0.32
USP53-208ENST00000514305 ZNF879B4DU55 563 aa17.04■□□□□ 0.32
USP53-208ENST00000514305 F5H5P2 479 aa17.04■□□□□ 0.32
USP53-208ENST00000514305 H0YL77 283 aa17.04■□□□□ 0.32
USP53-208ENST00000514305 ALX3O95076 343 aa17.04■□□□□ 0.32
USP53-208ENST00000514305 FAM157CP0CG43 387 aa17.04■□□□□ 0.32
USP53-208ENST00000514305 RAB3AP20336 220 aa17.04■□□□□ 0.32
USP53-208ENST00000514305 GATA4P43694 442 aa17.04■□□□□ 0.32
USP53-208ENST00000514305 SOX2P48431 317 aa17.04■□□□□ 0.32
USP53-208ENST00000514305 CARTPTQ16568 116 aa17.04■□□□□ 0.32
USP53-208ENST00000514305 ACSM3Q53FZ2 586 aa17.04■□□□□ 0.32
USP53-208ENST00000514305 PEG10Q86TG7 708 aaKnown RBP17.04■□□□□ 0.32
USP53-208ENST00000514305 ZNF573Q86YE8 665 aa17.04■□□□□ 0.32
USP53-208ENST00000514305 PHC2Q8IXK0 858 aa17.04■□□□□ 0.32
USP53-208ENST00000514305 DNAAF1Q8NEP3 725 aa17.04■□□□□ 0.32
USP53-208ENST00000514305 OR51A4Q8NGJ6 313 aa17.04■□□□□ 0.32
USP53-208ENST00000514305 ITLN1Q8WWA0 313 aa17.04■□□□□ 0.32
USP53-208ENST00000514305 SPSB1Q96BD6 273 aa17.04■□□□□ 0.32
USP53-208ENST00000514305 ITPKCQ96DU7 683 aa17.04■□□□□ 0.32
USP53-208ENST00000514305 BORCS8Q96FH0 119 aa17.04■□□□□ 0.32
USP53-208ENST00000514305 BEX2Q9BXY8 128 aa17.04■□□□□ 0.32
USP53-208ENST00000514305 SLITRK2Q9H156 845 aa17.04■□□□□ 0.32
USP53-208ENST00000514305 TMEM160Q9NX00 188 aa17.04■□□□□ 0.32
USP53-208ENST00000514305 LPAR3Q9UBY5 353 aa17.04■□□□□ 0.32
USP53-208ENST00000514305 MXRA5Q9NR99 2828 aa17.04■□□□□ 0.32
USP53-208ENST00000514305 ARL6IP5O75915 188 aa17.03■□□□□ 0.32
USP53-208ENST00000514305 IGHV4-31P0DP07 118 aa17.03■□□□□ 0.32
USP53-208ENST00000514305 ZNF16P17020 682 aaPredicted RBP17.03■□□□□ 0.32
USP53-208ENST00000514305 ATF1P18846 271 aa17.03■□□□□ 0.32
USP53-208ENST00000514305 GALP22466 123 aa17.03■□□□□ 0.32
USP53-208ENST00000514305 RANBP1P43487 201 aa17.03■□□□□ 0.32
USP53-208ENST00000514305 GZMKP49863 264 aa17.03■□□□□ 0.32
USP53-208ENST00000514305 ATP1B3P54709 279 aa17.03■□□□□ 0.32
USP53-208ENST00000514305 CEP78Q5JTW2 689 aa17.03■□□□□ 0.32
USP53-208ENST00000514305 OR10AC1Q8NH08 325 aa17.03■□□□□ 0.32
USP53-208ENST00000514305 GTF3AQ92664 365 aaKnown RBP17.03■□□□□ 0.32
USP53-208ENST00000514305 ADAT3Q96EY9 351 aaPredicted RBP17.03■□□□□ 0.32
USP53-208ENST00000514305 GPR173Q9NS66 373 aa17.03■□□□□ 0.32
USP53-208ENST00000514305 CUBNO60494 3623 aa17.03■□□□□ 0.32
USP53-208ENST00000514305 A6NIN4 97 aa17.02■□□□□ 0.32
USP53-208ENST00000514305 A6NLC8 198 aa17.02■□□□□ 0.32
USP53-208ENST00000514305 TRIM64CA6NLI5 447 aa17.02■□□□□ 0.32
USP53-208ENST00000514305 RGS9O75916 674 aaPredicted RBP17.02■□□□□ 0.32
USP53-208ENST00000514305 HPXP02790 462 aa17.02■□□□□ 0.32
USP53-208ENST00000514305 GRPP07492 148 aa17.02■□□□□ 0.32
USP53-208ENST00000514305 JUNBP17275 347 aaPredicted RBP17.02■□□□□ 0.32
USP53-208ENST00000514305 RBP2P50120 134 aa17.02■□□□□ 0.32
USP53-208ENST00000514305 TMEM33P57088 247 aa17.02■□□□□ 0.32
USP53-208ENST00000514305 TIMM50Q3ZCQ8 353 aa17.02■□□□□ 0.32
USP53-208ENST00000514305 LHFPL2Q6ZUX7 228 aa17.02■□□□□ 0.32
USP53-208ENST00000514305 ZNF671Q8TAW3 534 aa17.02■□□□□ 0.32
USP53-208ENST00000514305 TMEM158Q8WZ71 300 aa17.02■□□□□ 0.32
USP53-208ENST00000514305 TIMD4Q96H15 378 aa17.02■□□□□ 0.32
USP53-208ENST00000514305 SHARPINQ9H0F6 387 aa17.02■□□□□ 0.32
USP53-208ENST00000514305 CHODLQ9H9P2 273 aa17.02■□□□□ 0.32
USP53-208ENST00000514305 NDUFB11Q9NX14 153 aa17.02■□□□□ 0.32
USP53-208ENST00000514305 FOXJ3Q9UPW0 622 aa17.02■□□□□ 0.32
USP53-208ENST00000514305 LRP5LA4QPB2 252 aa17.01■□□□□ 0.31
USP53-208ENST00000514305 MEGF11A6BM72 1044 aa17.01■□□□□ 0.31
USP53-208ENST00000514305 ZNF732B4DXR9 585 aa17.01■□□□□ 0.31
USP53-208ENST00000514305 SULT1B1O43704 296 aa17.01■□□□□ 0.31
USP53-208ENST00000514305 INMTO95050 263 aa17.01■□□□□ 0.31
USP53-208ENST00000514305 PTBP3O95758 552 aaKnown RBP17.01■□□□□ 0.31
USP53-208ENST00000514305 CYB5AP00167 134 aa17.01■□□□□ 0.31
USP53-208ENST00000514305 TGFBR2P37173 567 aa17.01■□□□□ 0.31
USP53-208ENST00000514305 NR4A2P43354 598 aa17.01■□□□□ 0.31
USP53-208ENST00000514305 GPM6AP51674 278 aa17.01■□□□□ 0.31
USP53-208ENST00000514305 MAB21L1Q13394 359 aa17.01■□□□□ 0.31
USP53-208ENST00000514305 DOC2BQ14184 412 aa17.01■□□□□ 0.31
USP53-208ENST00000514305 ZNF181Q2M3W8 571 aa17.01■□□□□ 0.31
USP53-208ENST00000514305 FAM76BQ5HYJ3 339 aa17.01■□□□□ 0.31
USP53-208ENST00000514305 CEACAM19Q7Z692 300 aa17.01■□□□□ 0.31
USP53-208ENST00000514305 OR1M1Q8NGA1 313 aa17.01■□□□□ 0.31
USP53-208ENST00000514305 RGP1Q92546 391 aaPredicted RBP17.01■□□□□ 0.31
USP53-208ENST00000514305 CCL17Q92583 94 aa17.01■□□□□ 0.31
USP53-208ENST00000514305 MUL1Q969V5 352 aa17.01■□□□□ 0.31
USP53-208ENST00000514305 OR14A2Q96R54 314 aa17.01■□□□□ 0.31
USP53-208ENST00000514305 TCF7L1Q9HCS4 588 aa17.01■□□□□ 0.31
USP53-208ENST00000514305 GSTK1Q9Y2Q3 226 aa17.01■□□□□ 0.31
USP53-208ENST00000514305 FAM230AA0A1W2PPH8 454 aa17■□□□□ 0.31
USP53-208ENST00000514305 VWC2LB2RUY7 222 aa17■□□□□ 0.31
USP53-208ENST00000514305 CLDN25C9JDP6 229 aa17■□□□□ 0.31
USP53-208ENST00000514305 LMX1BO60663 402 aa17■□□□□ 0.31
USP53-208ENST00000514305 GPX5O75715 221 aa17■□□□□ 0.31
USP53-208ENST00000514305 HCKP08631 526 aa17■□□□□ 0.31
USP53-208ENST00000514305 RPS11P62280 158 aaKnown RBP eCLIP17■□□□□ 0.31
USP53-208ENST00000514305 UBE2V2Q15819 145 aa17■□□□□ 0.31
USP53-208ENST00000514305 UNQ9370/PRO34162Q6UXP9 181 aa17■□□□□ 0.31
USP53-208ENST00000514305 OR13C9Q8NGT0 318 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms