RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 PIGLQ9Y2B2 252 aa8.12□□□□□ -1.11
LIMCH1-215ENST00000512632 MEMO1Q9Y316 297 aa8.12□□□□□ -1.11
LIMCH1-215ENST00000512632 FIGNL2A6NMB9 653 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 XRCC2O43543 280 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 DIRAS3O95661 229 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 GLAP06280 429 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 GLB1P16278 677 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 CBX5P45973 191 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 F2RL1P55085 397 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 ZNF616Q08AN1 781 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 ECH1Q13011 328 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 PDCD1Q15116 288 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 GGNBP1Q5YKI7 109 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 SGPP2Q8IWX5 399 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 FAM89BQ8N5H3 189 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 OR6X1Q8NH79 312 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 SFT2D1Q8WV19 159 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 ERGIC1Q969X5 290 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 FBXO17Q96EF6 278 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 KIRREL1Q96J84 757 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 OXGR1Q96P68 337 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 WDR77Q9BQA1 342 aaPredicted RBP8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 RPS10P5Q9NQ39 176 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 GPR173Q9NS66 373 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 DNAJB11Q9UBS4 358 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 NME2P1O60361 137 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 MTRF1O75570 445 aaKnown RBP8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 C1QL1O75973 258 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 PNLIPP16233 465 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 PTGDSP41222 190 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 FHITP49789 147 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 SMCO1Q147U7 214 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 PHYHD1Q5SRE7 291 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 RHBDD2Q6NTF9 364 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 CRIP3Q6Q6R5 217 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 OR2AE1Q8NHA4 323 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 DYRK2Q92630 601 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 ISOC2Q96AB3 205 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 REEP6Q96HR9 211 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 SNRNP70P08621 437 aaKnown RBP8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 FCGR3AP08637 254 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 EIF5AP63241 154 aaKnown RBP8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 ZNF385AQ96PM9 386 aaKnown RBP8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 C1orf123Q9NWV4 160 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 COA4Q9NYJ1 87 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 PLEK2Q9NYT0 353 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 AMDHD2Q9Y303 409 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 FAM186AA6NE01 2351 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 FAM230AA0A1W2PPH8 454 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 NUDT19A8MXV4 375 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 SPRY1O43609 319 aaPredicted RBP8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 ZFAND5O76080 213 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 IFNA21P01568 189 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 LYL1P12980 280 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 PRF1P14222 555 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 CPT2P23786 658 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 BATF2Q8N1L9 274 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 OR2M3Q8NG83 312 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 OR5L2Q8NGL0 311 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 PRRX2Q99811 253 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 DEFB126Q9BYW3 111 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 LIME1Q9H400 295 aa8.11□□□□□ -1.11
LIMCH1-215ENST00000512632 COLCA2A8K830 154 aa8.1□□□□□ -1.11
LIMCH1-215ENST00000512632 ZNF850A8MQ14 1090 aa8.1□□□□□ -1.11
LIMCH1-215ENST00000512632 TLX3O43711 291 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-215ENST00000512632 CST4P01036 141 aa8.1□□□□□ -1.11
LIMCH1-215ENST00000512632 CELA2AP08217 269 aa8.1□□□□□ -1.11
LIMCH1-215ENST00000512632 SULT1A2P50226 295 aa8.1□□□□□ -1.11
LIMCH1-215ENST00000512632 MTCP1P56278 107 aa8.1□□□□□ -1.11
LIMCH1-215ENST00000512632 PHLDA2Q53GA4 152 aa8.1□□□□□ -1.11
LIMCH1-215ENST00000512632 ZNF574Q6ZN55 896 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-215ENST00000512632 ZNF837Q96EG3 531 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-215ENST00000512632 SHDQ96IW2 340 aa8.1□□□□□ -1.11
LIMCH1-215ENST00000512632 JSRP1Q96MG2 331 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-215ENST00000512632 UCN2Q96RP3 112 aa8.1□□□□□ -1.11
LIMCH1-215ENST00000512632 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP8.1□□□□□ -1.11
LIMCH1-215ENST00000512632 NXT1Q9UKK6 140 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-215ENST00000512632 SCRG1O75711 98 aa8.1□□□□□ -1.11
LIMCH1-215ENST00000512632 OR5H8P0DN80 308 aa8.1□□□□□ -1.11
LIMCH1-215ENST00000512632 CSNK1A1P48729 337 aa8.1□□□□□ -1.11
LIMCH1-215ENST00000512632 ASCL1P50553 236 aa8.1□□□□□ -1.11
LIMCH1-215ENST00000512632 RAB30Q15771 203 aa8.1□□□□□ -1.11
LIMCH1-215ENST00000512632 FAM189A2Q15884 450 aa8.1□□□□□ -1.11
LIMCH1-215ENST00000512632 BTNL8Q6UX41 500 aa8.1□□□□□ -1.11
LIMCH1-215ENST00000512632 WDSUB1Q8N9V3 476 aa8.1□□□□□ -1.11
LIMCH1-215ENST00000512632 GNRHR2Q96P88 292 aa8.1□□□□□ -1.11
LIMCH1-215ENST00000512632 GDF9O60383 454 aa8.1□□□□□ -1.11
LIMCH1-215ENST00000512632 TSPAN15O95858 294 aa8.1□□□□□ -1.11
LIMCH1-215ENST00000512632 MSX1P28360 303 aa8.1□□□□□ -1.11
LIMCH1-215ENST00000512632 MEOX2P50222 304 aa8.1□□□□□ -1.11
LIMCH1-215ENST00000512632 GRB2P62993 217 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-215ENST00000512632 RSPO1Q2MKA7 263 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-215ENST00000512632 CPEB2Q7Z5Q1 589 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-215ENST00000512632 IP6K3Q96PC2 410 aa8.1□□□□□ -1.11
LIMCH1-215ENST00000512632 RASL10BQ96S79 203 aa8.1□□□□□ -1.11
LIMCH1-215ENST00000512632 PIGQQ9BRB3 760 aa8.1□□□□□ -1.11
LIMCH1-215ENST00000512632 PADI1Q9ULC6 663 aa8.1□□□□□ -1.11
LIMCH1-215ENST00000512632 LINC01387J3KSC0 135 aa8.1□□□□□ -1.11
LIMCH1-215ENST00000512632 NAT2P11245 290 aa8.1□□□□□ -1.11
LIMCH1-215ENST00000512632 IGFBP4P22692 258 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms