RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 PXDC1Q5TGL8 231 aa9.54□□□□□ -0.88
LIMCH1-205ENST00000503057 MSI2Q96DH6 328 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-205ENST00000503057 VWCEQ96DN2 955 aa9.54□□□□□ -0.88
LIMCH1-205ENST00000503057 NMES1Q9C002 83 aa9.54□□□□□ -0.88
LIMCH1-205ENST00000503057 LINC00862A6NCI5 91 aa9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 SSSCA1O60232 199 aa9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 NME2P1O60361 137 aa9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 CST2P09228 141 aa9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 ANKRD34CP0C6C1 535 aa9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 CSF2RBP32927 897 aa9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 WDSUB1Q8N9V3 476 aa9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 OR2AE1Q8NHA4 323 aa9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 EXTL1Q92935 676 aa9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 NIPSNAP3BQ9BS92 247 aa9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 ALX4Q9H161 411 aaPredicted RBP9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 SLC39A9Q9NUM3 307 aa9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 SDK1Q7Z5N4 2213 aa9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 RECKO95980 971 aa9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 AKR1C1Q04828 323 aa9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 LRRTM1Q86UE6 522 aa9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 ZBTB44Q8NCP5 570 aa9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 RDH5Q92781 318 aa9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 HGDQ93099 445 aa9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 PIK3IP1Q96FE7 263 aa9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 AK3Q9UIJ7 227 aa9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 SIRPB1O00241 398 aa9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 DCTN6O00399 190 aa9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 ACTL6BO94805 426 aa9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 H2AFB1P0C5Y9 115 aa9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 GLRA1P23415 457 aa9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 ARF1P84077 181 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 C6orf201Q7Z4U5 140 aa9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 C1orf210Q8IVY1 113 aa9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 TMEM9BQ9NQ34 198 aa9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 PRMT8Q9NR22 394 aaPredicted RBP9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 IGLV1-36A0A0B4J1U3 117 aa9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 RPS10-NUDT3A0A1W2PQS6 291 aa9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 GPR31O00270 319 aa9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 B3GALNT1O75752 331 aa9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 SCO1O75880 301 aa9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 IGHMP01871 453 aa9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 PTGER4P35408 488 aa9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 RPS10P46783 165 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 PDLIM3Q53GG5 364 aaPredicted RBP9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 PRSS54Q6PEW0 395 aa9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 MRPS24Q96EL2 167 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 TRIB1Q96RU8 372 aa9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 HIPK2Q9H2X6 1198 aa9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 PRELID3BQ9Y3B1 194 aa9.53□□□□□ -0.88
LIMCH1-205ENST00000503057 A8MXE2 369 aa9.52□□□□□ -0.88
LIMCH1-205ENST00000503057 DNPH1O43598 174 aa9.52□□□□□ -0.88
LIMCH1-205ENST00000503057 IGLV3-19P01714 112 aa9.52□□□□□ -0.88
LIMCH1-205ENST00000503057 ISG15P05161 165 aa9.52□□□□□ -0.88
LIMCH1-205ENST00000503057 GLI4P10075 376 aa9.52□□□□□ -0.88
LIMCH1-205ENST00000503057 EDN3P14138 238 aa9.52□□□□□ -0.88
LIMCH1-205ENST00000503057 IDH3GP51553 393 aaPredicted RBP9.52□□□□□ -0.88
LIMCH1-205ENST00000503057 FLI1Q01543 452 aaPredicted RBP9.52□□□□□ -0.88
LIMCH1-205ENST00000503057 LTC4SQ16873 150 aa9.52□□□□□ -0.88
LIMCH1-205ENST00000503057 LINC01590Q5TEZ4 76 aa9.52□□□□□ -0.88
LIMCH1-205ENST00000503057 OR10Z1Q8NGY1 313 aa9.52□□□□□ -0.88
LIMCH1-205ENST00000503057 C22orf15Q8WYQ4 148 aa9.52□□□□□ -0.88
LIMCH1-205ENST00000503057 SARAFQ96BY9 339 aa9.52□□□□□ -0.88
LIMCH1-205ENST00000503057 LIN37Q96GY3 246 aaPredicted RBP9.52□□□□□ -0.88
LIMCH1-205ENST00000503057 PRRX2Q99811 253 aa9.52□□□□□ -0.88
LIMCH1-205ENST00000503057 TMPRSS13Q9BYE2 586 aa9.52□□□□□ -0.88
LIMCH1-205ENST00000503057 FRMPD3Q5JV73 1810 aa9.52□□□□□ -0.88
LIMCH1-205ENST00000503057 ATP6V1G2-DDX39BF2Z307 99 aa9.52□□□□□ -0.89
LIMCH1-205ENST00000503057 CST4P01036 141 aa9.52□□□□□ -0.89
LIMCH1-205ENST00000503057 VSIG8P0DPA2 414 aa9.52□□□□□ -0.89
LIMCH1-205ENST00000503057 LIFP15018 202 aa9.52□□□□□ -0.89
LIMCH1-205ENST00000503057 HOXA1P49639 335 aaPredicted RBP9.52□□□□□ -0.89
LIMCH1-205ENST00000503057 TEX30Q5JUR7 227 aa9.52□□□□□ -0.89
LIMCH1-205ENST00000503057 ZNF519Q8TB69 540 aa9.52□□□□□ -0.89
LIMCH1-205ENST00000503057 SLC25A38Q96DW6 304 aa9.52□□□□□ -0.89
LIMCH1-205ENST00000503057 RCL1Q9Y2P8 373 aaKnown RBP9.52□□□□□ -0.89
LIMCH1-205ENST00000503057 MRPS18BQ9Y676 258 aaKnown RBP9.52□□□□□ -0.89
LIMCH1-205ENST00000503057 RRASP10301 218 aa9.52□□□□□ -0.89
LIMCH1-205ENST00000503057 CD80P33681 288 aa9.52□□□□□ -0.89
LIMCH1-205ENST00000503057 RAB1AP62820 205 aa9.52□□□□□ -0.89
LIMCH1-205ENST00000503057 PABPC1L2AQ5JQF8 200 aa9.52□□□□□ -0.89
LIMCH1-205ENST00000503057 SDSLQ96GA7 329 aa9.52□□□□□ -0.89
LIMCH1-205ENST00000503057 FAAP24Q9BTP7 215 aa9.52□□□□□ -0.89
LIMCH1-205ENST00000503057 MMP26Q9NRE1 261 aa9.52□□□□□ -0.89
LIMCH1-205ENST00000503057 TMEM74BQ9NUR3 256 aa9.52□□□□□ -0.89
LIMCH1-205ENST00000503057 ELF5Q9UKW6 265 aaPredicted RBP9.52□□□□□ -0.89
LIMCH1-205ENST00000503057 A0A1W2PNV4 684 aa9.52□□□□□ -0.89
LIMCH1-205ENST00000503057 TTRP02766 147 aa9.52□□□□□ -0.89
LIMCH1-205ENST00000503057 MPLP40238 635 aa9.52□□□□□ -0.89
LIMCH1-205ENST00000503057 RPUSD3Q6P087 351 aaKnown RBP9.52□□□□□ -0.89
LIMCH1-205ENST00000503057 PARP12Q9H0J9 701 aaKnown RBP9.52□□□□□ -0.89
LIMCH1-205ENST00000503057 FSCN3Q9NQT6 498 aa9.52□□□□□ -0.89
LIMCH1-205ENST00000503057 TMED3Q9Y3Q3 217 aa9.52□□□□□ -0.89
LIMCH1-205ENST00000503057 CKAP5Q14008 2032 aa9.52□□□□□ -0.89
LIMCH1-205ENST00000503057 PIN1P1O15428 100 aa9.52□□□□□ -0.89
LIMCH1-205ENST00000503057 RAB11AP62491 216 aa9.52□□□□□ -0.89
LIMCH1-205ENST00000503057 HSD17B13Q7Z5P4 300 aaPredicted RBP9.52□□□□□ -0.89
LIMCH1-205ENST00000503057 Q8IYB0 196 aa9.52□□□□□ -0.89
LIMCH1-205ENST00000503057 MAFAQ8NHW3 353 aaPredicted RBP9.52□□□□□ -0.89
LIMCH1-205ENST00000503057 CT55Q8WUE5 264 aa9.52□□□□□ -0.89
LIMCH1-205ENST00000503057 SFT2D1Q8WV19 159 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms