RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 IZUMO2Q6UXV1 221 aa12.32□□□□□ -0.44
USP4-212ENST00000486549 TMPRSS11AQ6ZMR5 421 aa12.32□□□□□ -0.44
USP4-212ENST00000486549 AHSA2Q719I0 299 aa12.32□□□□□ -0.44
USP4-212ENST00000486549 CCDC54Q8NEL0 328 aa12.32□□□□□ -0.44
USP4-212ENST00000486549 OR4M2Q8NGB6 313 aa12.32□□□□□ -0.44
USP4-212ENST00000486549 OR10AC1Q8NH08 325 aa12.32□□□□□ -0.44
USP4-212ENST00000486549 WDR13Q9H1Z4 485 aa12.32□□□□□ -0.44
USP4-212ENST00000486549 OR51I2Q9H344 312 aa12.32□□□□□ -0.44
USP4-212ENST00000486549 TRIM36Q9NQ86 728 aa12.32□□□□□ -0.44
USP4-212ENST00000486549 SNTG1Q9NSN8 517 aa12.32□□□□□ -0.44
USP4-212ENST00000486549 CTSZQ9UBR2 303 aa12.32□□□□□ -0.44
USP4-212ENST00000486549 DNAJB11Q9UBS4 358 aa12.32□□□□□ -0.44
USP4-212ENST00000486549 CLN8Q9UBY8 286 aa12.32□□□□□ -0.44
USP4-212ENST00000486549 OR5V1Q9UGF6 321 aa12.32□□□□□ -0.44
USP4-212ENST00000486549 EXOSC1Q9Y3B2 195 aaKnown RBP12.32□□□□□ -0.44
USP4-212ENST00000486549 FAM230AA0A1W2PPH8 454 aa12.31□□□□□ -0.44
USP4-212ENST00000486549 EFCAB10A6NFE3 127 aa12.31□□□□□ -0.44
USP4-212ENST00000486549 A8MXK9 166 aa12.31□□□□□ -0.44
USP4-212ENST00000486549 SRRM5B3KS81 715 aa12.31□□□□□ -0.44
USP4-212ENST00000486549 H0YJX3 145 aa12.31□□□□□ -0.44
USP4-212ENST00000486549 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.31□□□□□ -0.44
USP4-212ENST00000486549 GATBO75879 557 aaKnown RBP12.31□□□□□ -0.44
USP4-212ENST00000486549 ISG15P05161 165 aa12.31□□□□□ -0.44
USP4-212ENST00000486549 CCDC159P0C7I6 412 aa12.31□□□□□ -0.44
USP4-212ENST00000486549 HAAOP46952 286 aa12.31□□□□□ -0.44
USP4-212ENST00000486549 GTF2A1P52655 376 aaPredicted RBP12.31□□□□□ -0.44
USP4-212ENST00000486549 ST3GAL4Q11206 333 aa12.31□□□□□ -0.44
USP4-212ENST00000486549 MRPL28Q13084 256 aaKnown RBP12.31□□□□□ -0.44
USP4-212ENST00000486549 MED21Q13503 144 aa12.31□□□□□ -0.44
USP4-212ENST00000486549 MICBQ29980 383 aa12.31□□□□□ -0.44
USP4-212ENST00000486549 OR5T2Q8NGG2 359 aa12.31□□□□□ -0.44
USP4-212ENST00000486549 OR51A4Q8NGJ6 313 aa12.31□□□□□ -0.44
USP4-212ENST00000486549 OR13C3Q8NGS6 347 aa12.31□□□□□ -0.44
USP4-212ENST00000486549 OR10Z1Q8NGY1 313 aa12.31□□□□□ -0.44
USP4-212ENST00000486549 FBLIM1Q8WUP2 373 aa12.31□□□□□ -0.44
USP4-212ENST00000486549 AQP3Q92482 292 aa12.31□□□□□ -0.44
USP4-212ENST00000486549 FGGYQ96C11 551 aa12.31□□□□□ -0.44
USP4-212ENST00000486549 ADAT3Q96EY9 351 aaPredicted RBP12.31□□□□□ -0.44
USP4-212ENST00000486549 TECTBQ96PL2 329 aa12.31□□□□□ -0.44
USP4-212ENST00000486549 MDFIQ99750 246 aa12.31□□□□□ -0.44
USP4-212ENST00000486549 PDCD1LG2Q9BQ51 273 aa12.31□□□□□ -0.44
USP4-212ENST00000486549 CHST5Q9GZS9 411 aa12.31□□□□□ -0.44
USP4-212ENST00000486549 COMMD4Q9H0A8 199 aa12.31□□□□□ -0.44
USP4-212ENST00000486549 MMP26Q9NRE1 261 aa12.31□□□□□ -0.44
USP4-212ENST00000486549 CHCHD3Q9NX63 227 aaKnown RBP12.31□□□□□ -0.44
USP4-212ENST00000486549 CLEC2DQ9UHP7 191 aa12.31□□□□□ -0.44
USP4-212ENST00000486549 HHLA2Q9UM44 414 aa12.31□□□□□ -0.44
USP4-212ENST00000486549 SLC7A11Q9UPY5 501 aa12.31□□□□□ -0.44
USP4-212ENST00000486549 CAB39Q9Y376 341 aaPredicted RBP12.31□□□□□ -0.44
USP4-212ENST00000486549 SVEP1Q4LDE5 3571 aa12.31□□□□□ -0.44
USP4-212ENST00000486549 TRBV2A0A0J9YWF9 115 aa12.3□□□□□ -0.44
USP4-212ENST00000486549 PQLC2LA1A4F0 135 aa12.3□□□□□ -0.44
USP4-212ENST00000486549 RNF212BA8MTL3 300 aa12.3□□□□□ -0.44
USP4-212ENST00000486549 TRAPPC2LH3BP13 241 aa12.3□□□□□ -0.44
USP4-212ENST00000486549 SYNGR1O43759 233 aa12.3□□□□□ -0.44
USP4-212ENST00000486549 SERPINA3P01011 423 aa12.3□□□□□ -0.44
USP4-212ENST00000486549 PIPP12273 146 aaPredicted RBP12.3□□□□□ -0.44
USP4-212ENST00000486549 MUC1P15941 1255 aaPredicted RBP12.3□□□□□ -0.44
USP4-212ENST00000486549 GLRA1P23415 457 aa12.3□□□□□ -0.44
USP4-212ENST00000486549 SCGB2A2Q13296 93 aa12.3□□□□□ -0.44
USP4-212ENST00000486549 UBE2V2Q15819 145 aa12.3□□□□□ -0.44
USP4-212ENST00000486549 XAF1Q6GPH4 301 aa12.3□□□□□ -0.44
USP4-212ENST00000486549 ZNF573Q86YE8 665 aa12.3□□□□□ -0.44
USP4-212ENST00000486549 BATF2Q8N1L9 274 aa12.3□□□□□ -0.44
USP4-212ENST00000486549 STX19Q8N4C7 294 aa12.3□□□□□ -0.44
USP4-212ENST00000486549 TEX29Q8N6K0 151 aa12.3□□□□□ -0.44
USP4-212ENST00000486549 OR5AK2Q8NH90 309 aa12.3□□□□□ -0.44
USP4-212ENST00000486549 ZNF671Q8TAW3 534 aa12.3□□□□□ -0.44
USP4-212ENST00000486549 TSEN15Q8WW01 171 aaKnown RBP12.3□□□□□ -0.44
USP4-212ENST00000486549 GATAD2BQ8WXI9 593 aa12.3□□□□□ -0.44
USP4-212ENST00000486549 ZNF488Q96MN9 340 aa12.3□□□□□ -0.44
USP4-212ENST00000486549 CCL13Q99616 98 aa12.3□□□□□ -0.44
USP4-212ENST00000486549 RASSF4Q9H2L5 321 aa12.3□□□□□ -0.44
USP4-212ENST00000486549 C7orf69Q9H7B7 122 aa12.3□□□□□ -0.44
USP4-212ENST00000486549 CNOT2Q9NZN8 540 aaKnown RBP12.3□□□□□ -0.44
USP4-212ENST00000486549 PSORS1C1Q9UIG5 152 aa12.3□□□□□ -0.44
USP4-212ENST00000486549 LOC105371242A0A075B767 164 aa12.29□□□□□ -0.44
USP4-212ENST00000486549 A0A1B0GW55 424 aa12.29□□□□□ -0.44
USP4-212ENST00000486549 TMEM212A6NML5 194 aa12.29□□□□□ -0.44
USP4-212ENST00000486549 J3QT63 122 aa12.29□□□□□ -0.44
USP4-212ENST00000486549 TMPRSS2O15393 492 aa12.29□□□□□ -0.44
USP4-212ENST00000486549 NDUFA2O43678 99 aa12.29□□□□□ -0.44
USP4-212ENST00000486549 ZFPL1O95159 310 aa12.29□□□□□ -0.44
USP4-212ENST00000486549 PLATP00750 562 aa12.29□□□□□ -0.44
USP4-212ENST00000486549 AVPP01185 164 aa12.29□□□□□ -0.44
USP4-212ENST00000486549 TFF1P04155 84 aa12.29□□□□□ -0.44
USP4-212ENST00000486549 DUX4L2P0CJ85 424 aa12.29□□□□□ -0.44
USP4-212ENST00000486549 DUX4L3P0CJ86 424 aa12.29□□□□□ -0.44
USP4-212ENST00000486549 DUX4L4P0CJ87 422 aa12.29□□□□□ -0.44
USP4-212ENST00000486549 DUX4L5P0CJ88 424 aa12.29□□□□□ -0.44
USP4-212ENST00000486549 DUX4L6P0CJ89 424 aa12.29□□□□□ -0.44
USP4-212ENST00000486549 DUX4L7P0CJ90 424 aa12.29□□□□□ -0.44
USP4-212ENST00000486549 ADRA2CP18825 462 aa12.29□□□□□ -0.44
USP4-212ENST00000486549 CPT2P23786 658 aa12.29□□□□□ -0.44
USP4-212ENST00000486549 CFHR2P36980 270 aa12.29□□□□□ -0.44
USP4-212ENST00000486549 TGM4P49221 684 aa12.29□□□□□ -0.44
USP4-212ENST00000486549 RIPK1Q13546 671 aa12.29□□□□□ -0.44
USP4-212ENST00000486549 CNN3Q15417 329 aaKnown RBP12.29□□□□□ -0.44
USP4-212ENST00000486549 WDR25Q64LD2 544 aaPredicted RBP12.29□□□□□ -0.44
USP4-212ENST00000486549 DUX4L9Q6RFH8 374 aaPredicted RBP12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms