RNA–Protein interactions for RNA: ENST00000460408.5

RFC4-211, Transcript of replication factor C subunit 4, humanhuman

TSL 2

Gene RFC4, Length 628 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-211ENST00000460408 PGA5P0DJD9 388 aa1.9□□□□□ -2.11
RFC4-211ENST00000460408 USF1P22415 310 aaPredicted RBP1.9□□□□□ -2.11
RFC4-211ENST00000460408 OPRK1P41145 380 aa1.9□□□□□ -2.11
RFC4-211ENST00000460408 CDKN2DP55273 166 aa1.9□□□□□ -2.11
RFC4-211ENST00000460408 GFERP55789 205 aa1.9□□□□□ -2.11
RFC4-211ENST00000460408 UBE2MP61081 183 aaKnown RBP1.9□□□□□ -2.11
RFC4-211ENST00000460408 IFT88Q13099 833 aa1.9□□□□□ -2.11
RFC4-211ENST00000460408 C12orf54Q6X4T0 127 aa1.9□□□□□ -2.11
RFC4-211ENST00000460408 APRG1Q8IVJ8 170 aa1.9□□□□□ -2.11
RFC4-211ENST00000460408 WDFY1Q8IWB7 410 aa1.9□□□□□ -2.11
RFC4-211ENST00000460408 KATNAL2Q8IYT4 538 aa1.9□□□□□ -2.11
RFC4-211ENST00000460408 ARRDC1Q8N5I2 433 aa1.9□□□□□ -2.11
RFC4-211ENST00000460408 COMMD1Q8N668 190 aa1.9□□□□□ -2.11
RFC4-211ENST00000460408 ZNF709Q8N972 641 aa1.9□□□□□ -2.11
RFC4-211ENST00000460408 OR11H7Q8NGC8 314 aa1.9□□□□□ -2.11
RFC4-211ENST00000460408 ZNF461Q8TAF7 563 aa1.9□□□□□ -2.11
RFC4-211ENST00000460408 SYNPRQ8TBG9 265 aa1.9□□□□□ -2.11
RFC4-211ENST00000460408 CIRBP-AS1Q8TBR5 109 aa1.9□□□□□ -2.11
RFC4-211ENST00000460408 OR51E1Q8TCB6 317 aa1.9□□□□□ -2.11
RFC4-211ENST00000460408 C17orf50Q8WW18 174 aa1.9□□□□□ -2.11
RFC4-211ENST00000460408 DEDD2Q8WXF8 326 aa1.9□□□□□ -2.11
RFC4-211ENST00000460408 RPEQ96AT9 228 aa1.9□□□□□ -2.11
RFC4-211ENST00000460408 ZNF488Q96MN9 340 aa1.9□□□□□ -2.11
RFC4-211ENST00000460408 RNF5Q99942 180 aa1.9□□□□□ -2.11
RFC4-211ENST00000460408 RSPO3Q9BXY4 272 aaPredicted RBP1.9□□□□□ -2.11
RFC4-211ENST00000460408 PDP1Q9P0J1 537 aaPredicted RBP1.9□□□□□ -2.11
RFC4-211ENST00000460408 SLC17A7Q9P2U7 560 aa1.9□□□□□ -2.11
RFC4-211ENST00000460408 GGA2Q9UJY4 613 aa1.9□□□□□ -2.11
RFC4-211ENST00000460408 ZNF835Q9Y2P0 537 aa1.9□□□□□ -2.11
RFC4-211ENST00000460408 APC2O95996 2303 aa1.9□□□□□ -2.11
RFC4-211ENST00000460408 CDK5RAP2Q96SN8 1893 aa1.9□□□□□ -2.11
RFC4-211ENST00000460408 NBEAL1Q6ZS30 2694 aa1.9□□□□□ -2.11
RFC4-211ENST00000460408 DMXL2Q8TDJ6 3036 aa1.9□□□□□ -2.11
RFC4-211ENST00000460408 FANCMQ8IYD8 2048 aa1.9□□□□□ -2.11
RFC4-211ENST00000460408 AHCTF1Q8WYP5 2266 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 RELNP78509 3460 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 ROBO3Q96MS0 1386 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 SHROOM3Q8TF72 1996 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 FREM2Q5SZK8 3169 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 IGHV3OR16-9A0A0B4J2B5 98 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 TSPAN11A1L157 253 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 PDZK1P1A8MUH7 402 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 GABRPO00591 440 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 NME4O00746 187 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 BCKDKO14874 412 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 CASQ2O14958 399 aaPredicted RBP1.89□□□□□ -2.11
RFC4-211ENST00000460408 NMT2O60551 498 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 FOXH1O75593 365 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 CCNE2O96020 404 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 HPRT1P00492 218 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 CD74P04233 296 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 ASGR1P07306 291 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 DCNP07585 359 aaKnown RBP1.89□□□□□ -2.11
RFC4-211ENST00000460408 ZNF286BP0CG31 522 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 HOXB8P17481 243 aaPredicted RBP1.89□□□□□ -2.11
RFC4-211ENST00000460408 IL32P24001 234 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 CXCL12P48061 93 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 SLC11A1P49279 550 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 FABP6P51161 128 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 RPS15AP62244 130 aaKnown RBP1.89□□□□□ -2.11
RFC4-211ENST00000460408 CDK5Q00535 292 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 CDC20Q12834 499 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 NCF4Q15080 339 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 LY6EQ16553 131 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 TRMT5Q32P41 509 aaKnown RBP1.89□□□□□ -2.11
RFC4-211ENST00000460408 GCSAMLQ5JQS6 135 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 SHISA6Q6ZSJ9 500 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 NKAIN4Q8IVV8 208 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 CBR4Q8N4T8 237 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 OR5AR1Q8NGP9 310 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 OR6Q1Q8NGQ2 317 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 TCEAL3Q969E4 200 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 HSD17B10Q99714 261 aaKnown RBP1.89□□□□□ -2.11
RFC4-211ENST00000460408 FOXC2Q99958 501 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 PORCNQ9H237 461 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 MED4Q9NPJ6 270 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 SLC39A1Q9NY26 324 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 AHSPQ9NZD4 102 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 MYEF2Q9P2K5 600 aaKnown RBP1.89□□□□□ -2.11
RFC4-211ENST00000460408 HYOU1Q9Y4L1 999 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 SAR1BQ9Y6B6 198 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 F8P00451 2351 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 URB1O60287 2271 aaKnown RBP1.89□□□□□ -2.11
RFC4-211ENST00000460408 NOTCH1P46531 2555 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 PLXNB2O15031 1838 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 KIF20BQ96Q89 1820 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 WDR19Q8NEZ3 1342 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 SYNRGQ9UMZ2 1314 aa1.89□□□□□ -2.11
RFC4-211ENST00000460408 ATRQ13535 2644 aa1.88□□□□□ -2.11
RFC4-211ENST00000460408 CELSR3Q9NYQ7 3312 aa1.88□□□□□ -2.11
RFC4-211ENST00000460408 KRBOX1C9JBD0 128 aa1.88□□□□□ -2.11
RFC4-211ENST00000460408 H0YIV9 168 aa1.88□□□□□ -2.11
RFC4-211ENST00000460408 GOLGA8TH3BQL2 631 aa1.88□□□□□ -2.11
RFC4-211ENST00000460408 ZBTB5O15062 677 aa1.88□□□□□ -2.11
RFC4-211ENST00000460408 RRP8O43159 456 aaKnown RBP1.88□□□□□ -2.11
RFC4-211ENST00000460408 HLA-DQA1P01909 254 aa1.88□□□□□ -2.11
RFC4-211ENST00000460408 IFNW1P05000 195 aa1.88□□□□□ -2.11
RFC4-211ENST00000460408 TACSTD2P09758 323 aa1.88□□□□□ -2.11
RFC4-211ENST00000460408 UBCP0CG48 685 aaKnown RBP1.88□□□□□ -2.11
RFC4-211ENST00000460408 PGA4P0DJD7 388 aa1.88□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 132 ms