RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 TMEM164Q5U3C3 297 aa13.13□□□□□ -0.31
LDLR-202ENST00000455727 AADACL3Q5VUY0 350 aa13.13□□□□□ -0.31
LDLR-202ENST00000455727 OVCH2Q7RTZ1 564 aa13.13□□□□□ -0.31
LDLR-202ENST00000455727 CSNK2A3Q8NEV1 391 aa13.13□□□□□ -0.31
LDLR-202ENST00000455727 OR2M7Q8NG81 312 aa13.13□□□□□ -0.31
LDLR-202ENST00000455727 OR2AE1Q8NHA4 323 aa13.13□□□□□ -0.31
LDLR-202ENST00000455727 NMES1Q9C002 83 aa13.13□□□□□ -0.31
LDLR-202ENST00000455727 METTL9Q9H1A3 318 aa13.13□□□□□ -0.31
LDLR-202ENST00000455727 WNT5BQ9H1J7 359 aa13.13□□□□□ -0.31
LDLR-202ENST00000455727 ELL3Q9HB65 397 aaPredicted RBP13.13□□□□□ -0.31
LDLR-202ENST00000455727 SFT2D2O95562 160 aa13.12□□□□□ -0.31
LDLR-202ENST00000455727 TMEM225BP0DP42 221 aa13.12□□□□□ -0.31
LDLR-202ENST00000455727 CD59P13987 128 aa13.12□□□□□ -0.31
LDLR-202ENST00000455727 ATP1B3P54709 279 aa13.12□□□□□ -0.31
LDLR-202ENST00000455727 CCDC157Q569K6 752 aa13.12□□□□□ -0.31
LDLR-202ENST00000455727 ABHD17BQ5VST6 288 aa13.12□□□□□ -0.31
LDLR-202ENST00000455727 KCTD9Q7L273 389 aa13.12□□□□□ -0.31
LDLR-202ENST00000455727 OR13G1Q8NGZ3 307 aa13.12□□□□□ -0.31
LDLR-202ENST00000455727 AKR7LQ8NHP1 331 aa13.12□□□□□ -0.31
LDLR-202ENST00000455727 COQ8AQ8NI60 647 aa13.12□□□□□ -0.31
LDLR-202ENST00000455727 THAP6Q8TBB0 222 aa13.12□□□□□ -0.31
LDLR-202ENST00000455727 TMEM230Q96A57 120 aa13.12□□□□□ -0.31
LDLR-202ENST00000455727 RTBDNQ9BSG5 229 aaPredicted RBP13.12□□□□□ -0.31
LDLR-202ENST00000455727 FOXJ2Q9P0K8 574 aa13.12□□□□□ -0.31
LDLR-202ENST00000455727 HSF4Q9ULV5 492 aa13.12□□□□□ -0.31
LDLR-202ENST00000455727 KANTRA0A1W2PQU2 76 aa13.12□□□□□ -0.31
LDLR-202ENST00000455727 MFSD2BA6NFX1 497 aa13.12□□□□□ -0.31
LDLR-202ENST00000455727 M0R296 226 aa13.12□□□□□ -0.31
LDLR-202ENST00000455727 ZNF250P15622 560 aa13.12□□□□□ -0.31
LDLR-202ENST00000455727 DLSTP36957 453 aa13.12□□□□□ -0.31
LDLR-202ENST00000455727 STK11Q15831 433 aa13.12□□□□□ -0.31
LDLR-202ENST00000455727 PLXDC2Q6UX71 529 aa13.12□□□□□ -0.31
LDLR-202ENST00000455727 LHFPL2Q6ZUX7 228 aa13.12□□□□□ -0.31
LDLR-202ENST00000455727 SKA3Q8IX90 412 aa13.12□□□□□ -0.31
LDLR-202ENST00000455727 ABHD3Q8WU67 409 aa13.12□□□□□ -0.31
LDLR-202ENST00000455727 ZNF845Q96IR2 970 aaPredicted RBP13.12□□□□□ -0.31
LDLR-202ENST00000455727 LINC00470Q9BZP3 86 aa13.12□□□□□ -0.31
LDLR-202ENST00000455727 PPA2Q9H2U2 334 aa13.12□□□□□ -0.31
LDLR-202ENST00000455727 ZNF703Q9H7S9 590 aaPredicted RBP13.12□□□□□ -0.31
LDLR-202ENST00000455727 SDHAF2Q9NX18 166 aa13.12□□□□□ -0.31
LDLR-202ENST00000455727 B4GALT7Q9UBV7 327 aa13.12□□□□□ -0.31
LDLR-202ENST00000455727 MUC3AQ02505 3323 aa13.11□□□□□ -0.31
LDLR-202ENST00000455727 A0A1W2PNU3 283 aaPredicted RBP13.11□□□□□ -0.31
LDLR-202ENST00000455727 RRP8O43159 456 aaKnown RBP13.11□□□□□ -0.31
LDLR-202ENST00000455727 BCL2L11O43521 198 aa13.11□□□□□ -0.31
LDLR-202ENST00000455727 MMP7P09237 267 aaPredicted RBP13.11□□□□□ -0.31
LDLR-202ENST00000455727 RBP2P50120 134 aa13.11□□□□□ -0.31
LDLR-202ENST00000455727 RSPO4Q2I0M5 234 aaPredicted RBP13.11□□□□□ -0.31
LDLR-202ENST00000455727 PDZD9Q8IXQ8 264 aa13.11□□□□□ -0.31
LDLR-202ENST00000455727 ST8SIA2Q92186 375 aa13.11□□□□□ -0.31
LDLR-202ENST00000455727 CYYR1Q96J86 154 aa13.11□□□□□ -0.31
LDLR-202ENST00000455727 CDC6Q99741 560 aa13.11□□□□□ -0.31
LDLR-202ENST00000455727 SLC25A32Q9H2D1 315 aa13.11□□□□□ -0.31
LDLR-202ENST00000455727 NARFLQ9H6Q4 476 aa13.11□□□□□ -0.31
LDLR-202ENST00000455727 RAB18Q9NP72 206 aa13.11□□□□□ -0.31
LDLR-202ENST00000455727 PLEKHJ1Q9NW61 149 aa13.11□□□□□ -0.31
LDLR-202ENST00000455727 ABI3Q9P2A4 366 aa13.11□□□□□ -0.31
LDLR-202ENST00000455727 ATPIF1Q9UII2 106 aa13.11□□□□□ -0.31
LDLR-202ENST00000455727 NUP50Q9UKX7 468 aa13.11□□□□□ -0.31
LDLR-202ENST00000455727 EDARQ9UNE0 448 aa13.11□□□□□ -0.31
LDLR-202ENST00000455727 RNF222A6NCQ9 220 aa13.11□□□□□ -0.31
LDLR-202ENST00000455727 FIGNL2A6NMB9 653 aa13.11□□□□□ -0.31
LDLR-202ENST00000455727 FAM25EA8MYX2 175 aa13.11□□□□□ -0.31
LDLR-202ENST00000455727 SPDEFO95238 335 aa13.11□□□□□ -0.31
LDLR-202ENST00000455727 FARS2O95363 451 aaKnown RBP13.11□□□□□ -0.31
LDLR-202ENST00000455727 CSTBP04080 98 aaKnown RBP13.11□□□□□ -0.31
LDLR-202ENST00000455727 CRHP06850 196 aa13.11□□□□□ -0.31
LDLR-202ENST00000455727 PATE4P0C8F1 98 aa13.11□□□□□ -0.31
LDLR-202ENST00000455727 PSMB6P28072 239 aa13.11□□□□□ -0.31
LDLR-202ENST00000455727 ECI1P42126 302 aa13.11□□□□□ -0.31
LDLR-202ENST00000455727 CHRFAM7AQ494W8 412 aa13.11□□□□□ -0.31
LDLR-202ENST00000455727 LRRC37A5PQ49AS3 106 aa13.11□□□□□ -0.31
LDLR-202ENST00000455727 CLEC18BQ6UXF7 455 aa13.11□□□□□ -0.31
LDLR-202ENST00000455727 FGFBP3Q8TAT2 258 aa13.11□□□□□ -0.31
LDLR-202ENST00000455727 LRRC20Q8TCA0 184 aa13.11□□□□□ -0.31
LDLR-202ENST00000455727 EMG1Q92979 244 aaKnown RBP13.11□□□□□ -0.31
LDLR-202ENST00000455727 TECTBQ96PL2 329 aa13.11□□□□□ -0.31
LDLR-202ENST00000455727 VRK1Q99986 396 aaPredicted RBP13.11□□□□□ -0.31
LDLR-202ENST00000455727 EHFQ9NZC4 300 aa13.11□□□□□ -0.31
LDLR-202ENST00000455727 PFDN2Q9UHV9 154 aa13.11□□□□□ -0.31
LDLR-202ENST00000455727 IGKV1-27A0A075B6S5 117 aa13.1□□□□□ -0.31
LDLR-202ENST00000455727 TRBV6-7A0A0A0MS04 114 aa13.1□□□□□ -0.31
LDLR-202ENST00000455727 hCG_38984A0A1B0GV85 526 aa13.1□□□□□ -0.31
LDLR-202ENST00000455727 F10P00742 488 aa13.1□□□□□ -0.31
LDLR-202ENST00000455727 NRASP01111 189 aa13.1□□□□□ -0.31
LDLR-202ENST00000455727 RLN2P04090 185 aa13.1□□□□□ -0.31
LDLR-202ENST00000455727 SERPINF1P36955 418 aa13.1□□□□□ -0.31
LDLR-202ENST00000455727 LHX2P50458 406 aa13.1□□□□□ -0.31
LDLR-202ENST00000455727 FAM3AP98173 230 aa13.1□□□□□ -0.31
LDLR-202ENST00000455727 RSU1Q15404 277 aa13.1□□□□□ -0.31
LDLR-202ENST00000455727 OR8B8Q15620 311 aa13.1□□□□□ -0.31
LDLR-202ENST00000455727 ADAMTS17Q8TE56 1095 aa13.1□□□□□ -0.31
LDLR-202ENST00000455727 PHYHIPLQ96FC7 376 aa13.1□□□□□ -0.31
LDLR-202ENST00000455727 BORCS8Q96FH0 119 aa13.1□□□□□ -0.31
LDLR-202ENST00000455727 CXorf58Q96LI9 332 aa13.1□□□□□ -0.31
LDLR-202ENST00000455727 SIGLEC12Q96PQ1 595 aa13.1□□□□□ -0.31
LDLR-202ENST00000455727 CHMP1AQ9HD42 196 aaPredicted RBP13.1□□□□□ -0.31
LDLR-202ENST00000455727 PARPBPQ9NWS1 579 aa13.1□□□□□ -0.31
LDLR-202ENST00000455727 NOSIPQ9Y314 301 aaKnown RBP13.1□□□□□ -0.31
LDLR-202ENST00000455727 FAM230AA0A1W2PPH8 454 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms