RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 TRAV1-2A0A0B4J238 106 aa10.31□□□□□ -0.76
PTPRF-208ENST00000437607 A0A1W2PPW3 197 aa10.31□□□□□ -0.76
PTPRF-208ENST00000437607 ANKRD61A6NGH8 418 aa10.31□□□□□ -0.76
PTPRF-208ENST00000437607 ANKRD30BLA7E2S9 258 aa10.31□□□□□ -0.76
PTPRF-208ENST00000437607 CD300LBA8K4G0 201 aa10.31□□□□□ -0.76
PTPRF-208ENST00000437607 PIN1P1O15428 100 aa10.31□□□□□ -0.76
PTPRF-208ENST00000437607 SULT1B1O43704 296 aa10.31□□□□□ -0.76
PTPRF-208ENST00000437607 TIMM8AO60220 97 aaPredicted RBP10.31□□□□□ -0.76
PTPRF-208ENST00000437607 ERCC1P07992 297 aaPredicted RBP10.31□□□□□ -0.76
PTPRF-208ENST00000437607 RAB3AP20336 220 aa10.31□□□□□ -0.76
PTPRF-208ENST00000437607 HNF1AP20823 631 aa10.31□□□□□ -0.76
PTPRF-208ENST00000437607 ACKR3P25106 362 aa10.31□□□□□ -0.76
PTPRF-208ENST00000437607 SDC2P34741 201 aa10.31□□□□□ -0.76
PTPRF-208ENST00000437607 SOX6P35712 828 aa10.31□□□□□ -0.76
PTPRF-208ENST00000437607 DDOSTP39656 456 aa10.31□□□□□ -0.76
PTPRF-208ENST00000437607 SELENOVP59797 346 aa10.31□□□□□ -0.76
PTPRF-208ENST00000437607 MXD1Q05195 221 aa10.31□□□□□ -0.76
PTPRF-208ENST00000437607 CNN3Q15417 329 aaKnown RBP10.31□□□□□ -0.76
PTPRF-208ENST00000437607 CEP78Q5JTW2 689 aa10.31□□□□□ -0.76
PTPRF-208ENST00000437607 CLVS2Q5SYC1 327 aa10.31□□□□□ -0.76
PTPRF-208ENST00000437607 Q6ZSR3 168 aa10.31□□□□□ -0.76
PTPRF-208ENST00000437607 SERPINA12Q8IW75 414 aa10.31□□□□□ -0.76
PTPRF-208ENST00000437607 NKAIN3Q8N8D7 197 aa10.31□□□□□ -0.76
PTPRF-208ENST00000437607 BHLHE23Q8NDY6 225 aa10.31□□□□□ -0.76
PTPRF-208ENST00000437607 OR5D14Q8NGL3 314 aa10.31□□□□□ -0.76
PTPRF-208ENST00000437607 KLF14Q8TD94 323 aaPredicted RBP10.31□□□□□ -0.76
PTPRF-208ENST00000437607 ORAI1Q96D31 301 aa10.31□□□□□ -0.76
PTPRF-208ENST00000437607 ZCCHC4Q9H5U6 513 aa10.31□□□□□ -0.76
PTPRF-208ENST00000437607 CCDC59Q9P031 241 aaKnown RBP10.31□□□□□ -0.76
PTPRF-208ENST00000437607 FOXJ3Q9UPW0 622 aa10.31□□□□□ -0.76
PTPRF-208ENST00000437607 ARHGAP32A7KAX9 2087 aa10.3□□□□□ -0.76
PTPRF-208ENST00000437607 TRAV8-7A0A075B6U6 113 aa10.3□□□□□ -0.76
PTPRF-208ENST00000437607 SMIM30A4D0T7 59 aa10.3□□□□□ -0.76
PTPRF-208ENST00000437607 A6NIN4 97 aa10.3□□□□□ -0.76
PTPRF-208ENST00000437607 MAGEB3O15480 346 aa10.3□□□□□ -0.76
PTPRF-208ENST00000437607 MAS1P04201 325 aa10.3□□□□□ -0.76
PTPRF-208ENST00000437607 HCKP08631 526 aa10.3□□□□□ -0.76
PTPRF-208ENST00000437607 DAOP14920 347 aa10.3□□□□□ -0.76
PTPRF-208ENST00000437607 SRMP19623 302 aa10.3□□□□□ -0.76
PTPRF-208ENST00000437607 RAB3BP20337 219 aa10.3□□□□□ -0.76
PTPRF-208ENST00000437607 GLRXP35754 106 aa10.3□□□□□ -0.76
PTPRF-208ENST00000437607 MPV17P39210 176 aa10.3□□□□□ -0.76
PTPRF-208ENST00000437607 KLF3P57682 345 aaPredicted RBP10.3□□□□□ -0.76
PTPRF-208ENST00000437607 HNRNPA0Q13151 305 aaKnown RBP10.3□□□□□ -0.76
PTPRF-208ENST00000437607 CNPY1Q3B7I2 92 aa10.3□□□□□ -0.76
PTPRF-208ENST00000437607 MBNL2Q5VZF2 373 aaKnown RBP10.3□□□□□ -0.76
PTPRF-208ENST00000437607 PLCXD3Q63HM9 321 aa10.3□□□□□ -0.76
PTPRF-208ENST00000437607 OR2T2Q6IF00 324 aa10.3□□□□□ -0.76
PTPRF-208ENST00000437607 UTS2BQ765I0 119 aa10.3□□□□□ -0.76
PTPRF-208ENST00000437607 TPRA1Q86W33 373 aa10.3□□□□□ -0.76
PTPRF-208ENST00000437607 OR5AS1Q8N127 324 aa10.3□□□□□ -0.76
PTPRF-208ENST00000437607 OR1M1Q8NGA1 313 aa10.3□□□□□ -0.76
PTPRF-208ENST00000437607 CMBLQ96DG6 245 aa10.3□□□□□ -0.76
PTPRF-208ENST00000437607 CPNE2Q96FN4 548 aaPredicted RBP10.3□□□□□ -0.76
PTPRF-208ENST00000437607 MARS2Q96GW9 593 aaKnown RBP10.3□□□□□ -0.76
PTPRF-208ENST00000437607 TECTBQ96PL2 329 aa10.3□□□□□ -0.76
PTPRF-208ENST00000437607 PPIL3Q9H2H8 161 aaKnown RBP10.3□□□□□ -0.76
PTPRF-208ENST00000437607 ZNF442Q9H7R0 627 aa10.3□□□□□ -0.76
PTPRF-208ENST00000437607 ABCB9Q9NP78 766 aa10.3□□□□□ -0.76
PTPRF-208ENST00000437607 PTTG2Q9NZH5 202 aa10.3□□□□□ -0.76
PTPRF-208ENST00000437607 FZR1Q9UM11 496 aa10.3□□□□□ -0.76
PTPRF-208ENST00000437607 CMAHPQ9Y471 501 aa10.3□□□□□ -0.76
PTPRF-208ENST00000437607 VSTM5A8MXK1 200 aa10.29□□□□□ -0.76
PTPRF-208ENST00000437607 IQCF6A8MYZ5 107 aa10.29□□□□□ -0.76
PTPRF-208ENST00000437607 IGFBP3P17936 291 aaPredicted RBP10.29□□□□□ -0.76
PTPRF-208ENST00000437607 BDKRB2P30411 391 aa10.29□□□□□ -0.76
PTPRF-208ENST00000437607 RIN1Q13671 783 aa10.29□□□□□ -0.76
PTPRF-208ENST00000437607 DDI2Q5TDH0 399 aa10.29□□□□□ -0.76
PTPRF-208ENST00000437607 ZDHHC23Q8IYP9 409 aa10.29□□□□□ -0.76
PTPRF-208ENST00000437607 SYNPRQ8TBG9 265 aa10.29□□□□□ -0.76
PTPRF-208ENST00000437607 UBASH3BQ8TF42 649 aa10.29□□□□□ -0.76
PTPRF-208ENST00000437607 NPRL2Q8WTW4 380 aa10.29□□□□□ -0.76
PTPRF-208ENST00000437607 SPSB1Q96BD6 273 aa10.29□□□□□ -0.76
PTPRF-208ENST00000437607 ADAT1Q9BUB4 502 aaKnown RBP10.29□□□□□ -0.76
PTPRF-208ENST00000437607 RAB1BQ9H0U4 201 aa10.29□□□□□ -0.76
PTPRF-208ENST00000437607 TMEM138Q9NPI0 162 aa10.29□□□□□ -0.76
PTPRF-208ENST00000437607 GPR173Q9NS66 373 aa10.29□□□□□ -0.76
PTPRF-208ENST00000437607 MRPL15Q9P015 296 aaKnown RBP10.29□□□□□ -0.76
PTPRF-208ENST00000437607 GPR160Q9UJ42 338 aa10.29□□□□□ -0.76
PTPRF-208ENST00000437607 PURGQ9UJV8 347 aaKnown RBP10.29□□□□□ -0.76
PTPRF-208ENST00000437607 NOP16Q9Y3C1 178 aaKnown RBP10.29□□□□□ -0.76
PTPRF-208ENST00000437607 TRRAPQ9Y4A5 3859 aa10.29□□□□□ -0.76
PTPRF-208ENST00000437607 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.28□□□□□ -0.76
PTPRF-208ENST00000437607 SHISA3A0PJX4 238 aa10.28□□□□□ -0.76
PTPRF-208ENST00000437607 MEGF11A6BM72 1044 aa10.28□□□□□ -0.76
PTPRF-208ENST00000437607 NOTOA8MTQ0 251 aa10.28□□□□□ -0.76
PTPRF-208ENST00000437607 LYNX1G3V0Z9 82 aa10.28□□□□□ -0.76
PTPRF-208ENST00000437607 TCF21O43680 179 aa10.28□□□□□ -0.76
PTPRF-208ENST00000437607 NRASP01111 189 aa10.28□□□□□ -0.76
PTPRF-208ENST00000437607 CLEC2LP0C7M8 214 aa10.28□□□□□ -0.76
PTPRF-208ENST00000437607 LYNX1P0DP58 116 aa10.28□□□□□ -0.76
PTPRF-208ENST00000437607 ATF1P18846 271 aa10.28□□□□□ -0.76
PTPRF-208ENST00000437607 KITLGP21583 273 aa10.28□□□□□ -0.76
PTPRF-208ENST00000437607 PRKACBP22694 351 aa10.28□□□□□ -0.76
PTPRF-208ENST00000437607 AZGP1P25311 298 aaKnown RBP10.28□□□□□ -0.76
PTPRF-208ENST00000437607 PSMD7P51665 324 aa10.28□□□□□ -0.76
PTPRF-208ENST00000437607 PSG7Q13046 419 aa10.28□□□□□ -0.76
PTPRF-208ENST00000437607 PRDX4Q13162 271 aa10.28□□□□□ -0.76
PTPRF-208ENST00000437607 DGUOKQ16854 277 aa10.28□□□□□ -0.76
PTPRF-208ENST00000437607 MSMPQ1L6U9 139 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms