RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 PAX5Q02548 391 aa13.77□□□□□ -0.21
PTPRF-206ENST00000429895 SSPNQ14714 243 aa13.77□□□□□ -0.21
PTPRF-206ENST00000429895 FFAR4Q5NUL3 377 aa13.77□□□□□ -0.21
PTPRF-206ENST00000429895 HGDQ93099 445 aa13.77□□□□□ -0.21
PTPRF-206ENST00000429895 OCIAD1Q9NX40 245 aa13.77□□□□□ -0.21
PTPRF-206ENST00000429895 YTHDF2Q9Y5A9 579 aaKnown RBP13.77□□□□□ -0.21
PTPRF-206ENST00000429895 OR2M5A3KFT3 312 aa13.77□□□□□ -0.21
PTPRF-206ENST00000429895 PMCHP20382 165 aa13.77□□□□□ -0.21
PTPRF-206ENST00000429895 KLF3P57682 345 aaPredicted RBP13.77□□□□□ -0.21
PTPRF-206ENST00000429895 RTP5Q14D33 572 aa13.77□□□□□ -0.21
PTPRF-206ENST00000429895 CADM4Q8NFZ8 388 aa13.77□□□□□ -0.21
PTPRF-206ENST00000429895 CRXO43186 299 aaPredicted RBP13.76□□□□□ -0.21
PTPRF-206ENST00000429895 GALNSP34059 522 aa13.76□□□□□ -0.21
PTPRF-206ENST00000429895 EVX1P49640 407 aa13.76□□□□□ -0.21
PTPRF-206ENST00000429895 TRA2AQ13595 282 aaKnown RBP eCLIP13.76□□□□□ -0.21
PTPRF-206ENST00000429895 FOXJ3Q9UPW0 622 aa13.76□□□□□ -0.21
PTPRF-206ENST00000429895 EPXP11678 715 aa13.76□□□□□ -0.21
PTPRF-206ENST00000429895 ZNF32P17041 273 aa13.76□□□□□ -0.21
PTPRF-206ENST00000429895 EIF3IQ13347 325 aaKnown RBP13.76□□□□□ -0.21
PTPRF-206ENST00000429895 OXA1LQ15070 435 aa13.76□□□□□ -0.21
PTPRF-206ENST00000429895 SFTPA2Q8IWL1 248 aa13.76□□□□□ -0.21
PTPRF-206ENST00000429895 SFTPA1Q8IWL2 248 aa13.76□□□□□ -0.21
PTPRF-206ENST00000429895 WDR89Q96FK6 387 aaPredicted RBP13.76□□□□□ -0.21
PTPRF-206ENST00000429895 SLC25A22Q9H936 323 aa13.76□□□□□ -0.21
PTPRF-206ENST00000429895 J3KRW8 73 aa13.76□□□□□ -0.21
PTPRF-206ENST00000429895 ADAM20O43506 726 aa13.76□□□□□ -0.21
PTPRF-206ENST00000429895 PPP1CBP62140 327 aa13.76□□□□□ -0.21
PTPRF-206ENST00000429895 PNLIPRP3Q17RR3 467 aa13.76□□□□□ -0.21
PTPRF-206ENST00000429895 KIAA1958Q8N8K9 716 aa13.76□□□□□ -0.21
PTPRF-206ENST00000429895 OR13G1Q8NGZ3 307 aa13.76□□□□□ -0.21
PTPRF-206ENST00000429895 SERPINE3A8MV23 424 aa13.76□□□□□ -0.21
PTPRF-206ENST00000429895 LINC01387J3KSC0 135 aa13.76□□□□□ -0.21
PTPRF-206ENST00000429895 CDX4O14627 284 aaPredicted RBP13.76□□□□□ -0.21
PTPRF-206ENST00000429895 TMEM211Q6ICI0 200 aa13.76□□□□□ -0.21
PTPRF-206ENST00000429895 MCHR2Q969V1 340 aa13.76□□□□□ -0.21
PTPRF-206ENST00000429895 DOK1Q99704 481 aa13.76□□□□□ -0.21
PTPRF-206ENST00000429895 FAAP24Q9BTP7 215 aa13.76□□□□□ -0.21
PTPRF-206ENST00000429895 GSX2Q9BZM3 304 aa13.76□□□□□ -0.21
PTPRF-206ENST00000429895 RAB1BQ9H0U4 201 aa13.76□□□□□ -0.21
PTPRF-206ENST00000429895 LIMS3P0CW19 117 aa13.76□□□□□ -0.21
PTPRF-206ENST00000429895 LIMS4P0CW20 117 aa13.76□□□□□ -0.21
PTPRF-206ENST00000429895 AVPR2P30518 371 aa13.76□□□□□ -0.21
PTPRF-206ENST00000429895 TMEM92Q6UXU6 159 aa13.76□□□□□ -0.21
PTPRF-206ENST00000429895 ARHGAP5-AS1Q96IT6 56 aa13.76□□□□□ -0.21
PTPRF-206ENST00000429895 OCEL1Q9H607 264 aa13.76□□□□□ -0.21
PTPRF-206ENST00000429895 ZNF716A6NP11 495 aa13.75□□□□□ -0.21
PTPRF-206ENST00000429895 MASP2O00187 686 aa13.75□□□□□ -0.21
PTPRF-206ENST00000429895 TUSC1Q2TAM9 212 aa13.75□□□□□ -0.21
PTPRF-206ENST00000429895 FNDC7Q5VTL7 733 aa13.75□□□□□ -0.21
PTPRF-206ENST00000429895 Q7L0L9 218 aa13.75□□□□□ -0.21
PTPRF-206ENST00000429895 Q8IYB0 196 aa13.75□□□□□ -0.21
PTPRF-206ENST00000429895 MRGPRDQ8TDS7 321 aa13.75□□□□□ -0.21
PTPRF-206ENST00000429895 OR2D2Q9H210 308 aa13.75□□□□□ -0.21
PTPRF-206ENST00000429895 PTHLHP12272 177 aa13.75□□□□□ -0.21
PTPRF-206ENST00000429895 IL9P15248 144 aa13.75□□□□□ -0.21
PTPRF-206ENST00000429895 LINC00303Q3SY05 128 aa13.75□□□□□ -0.21
PTPRF-206ENST00000429895 PP6455Q8WZ26 134 aa13.75□□□□□ -0.21
PTPRF-206ENST00000429895 OR1A1Q9P1Q5 309 aa13.75□□□□□ -0.21
PTPRF-206ENST00000429895 TRIM77I1YAP6 450 aa13.75□□□□□ -0.21
PTPRF-206ENST00000429895 ZNF205O95201 554 aa13.75□□□□□ -0.21
PTPRF-206ENST00000429895 RIMKLAQ8IXN7 391 aa13.75□□□□□ -0.21
PTPRF-206ENST00000429895 TMEM229BQ8NBD8 167 aa13.75□□□□□ -0.21
PTPRF-206ENST00000429895 WDR61Q9GZS3 305 aaKnown RBP13.75□□□□□ -0.21
PTPRF-206ENST00000429895 WNT16Q9UBV4 365 aa13.75□□□□□ -0.21
PTPRF-206ENST00000429895 HRASP01112 189 aa13.75□□□□□ -0.21
PTPRF-206ENST00000429895 ACSM4P0C7M7 580 aa13.75□□□□□ -0.21
PTPRF-206ENST00000429895 FABP4P15090 132 aa13.75□□□□□ -0.21
PTPRF-206ENST00000429895 SDHBP21912 280 aa13.75□□□□□ -0.21
PTPRF-206ENST00000429895 PRRX1P54821 245 aa13.75□□□□□ -0.21
PTPRF-206ENST00000429895 LYZP61626 148 aa13.75□□□□□ -0.21
PTPRF-206ENST00000429895 FUT7Q11130 342 aa13.75□□□□□ -0.21
PTPRF-206ENST00000429895 VAMP3Q15836 100 aa13.75□□□□□ -0.21
PTPRF-206ENST00000429895 BAP18Q8IXM2 172 aa13.75□□□□□ -0.21
PTPRF-206ENST00000429895 PRDM7Q9NQW5 492 aa13.75□□□□□ -0.21
PTPRF-206ENST00000429895 DDX60Q8IY21 1712 aaKnown RBP13.75□□□□□ -0.21
PTPRF-206ENST00000429895 IGHV1OR21-1A0A087WYE8 117 aa13.75□□□□□ -0.21
PTPRF-206ENST00000429895 MMP7P09237 267 aaPredicted RBP13.75□□□□□ -0.21
PTPRF-206ENST00000429895 COL9A1P20849 921 aa13.75□□□□□ -0.21
PTPRF-206ENST00000429895 YBX1P67809 324 aaKnown RBP13.75□□□□□ -0.21
PTPRF-206ENST00000429895 CT55Q8WUE5 264 aa13.75□□□□□ -0.21
PTPRF-206ENST00000429895 IL36GQ9NZH8 169 aa13.75□□□□□ -0.21
PTPRF-206ENST00000429895 KISS1Q15726 138 aa13.74□□□□□ -0.21
PTPRF-206ENST00000429895 ZNF574Q6ZN55 896 aaPredicted RBP13.74□□□□□ -0.21
PTPRF-206ENST00000429895 COA4Q9NYJ1 87 aa13.74□□□□□ -0.21
PTPRF-206ENST00000429895 IGKV3-7A0A075B6H7 116 aa13.74□□□□□ -0.21
PTPRF-206ENST00000429895 CLDN20P56880 219 aa13.74□□□□□ -0.21
PTPRF-206ENST00000429895 TNXAQ16473 311 aa13.74□□□□□ -0.21
PTPRF-206ENST00000429895 B3GNTL1Q67FW5 361 aaPredicted RBP13.74□□□□□ -0.21
PTPRF-206ENST00000429895 RNASEKQ6P5S7 137 aaKnown RBP13.74□□□□□ -0.21
PTPRF-206ENST00000429895 AMER3Q8N944 861 aa13.74□□□□□ -0.21
PTPRF-206ENST00000429895 SLC37A1P57057 533 aa13.74□□□□□ -0.21
PTPRF-206ENST00000429895 WDR38Q5JTN6 314 aa13.74□□□□□ -0.21
PTPRF-206ENST00000429895 SLC16A12Q6ZSM3 486 aa13.74□□□□□ -0.21
PTPRF-206ENST00000429895 MYPOPQ86VE0 399 aaPredicted RBP13.74□□□□□ -0.21
PTPRF-206ENST00000429895 A0A1B0GUH1 482 aa13.74□□□□□ -0.21
PTPRF-206ENST00000429895 MS4A18H0YCH9 400 aa13.74□□□□□ -0.21
PTPRF-206ENST00000429895 AKR7A2O43488 359 aa13.74□□□□□ -0.21
PTPRF-206ENST00000429895 FZD6O60353 706 aa13.74□□□□□ -0.21
PTPRF-206ENST00000429895 CTSVO60911 334 aa13.74□□□□□ -0.21
PTPRF-206ENST00000429895 OR4A8P0C604 315 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms