RNA–Protein interactions for RNA: ENST00000378679.7

SHROOM1-203, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SHROOM1, Length 4,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-203ENST00000378679 ACTL6BO94805 426 aa12.52□□□□□ -0.4
SHROOM1-203ENST00000378679 SELEP16581 610 aa12.52□□□□□ -0.4
SHROOM1-203ENST00000378679 IAH1Q2TAA2 248 aaPredicted RBP12.52□□□□□ -0.4
SHROOM1-203ENST00000378679 OR52W1Q6IF63 320 aa12.52□□□□□ -0.4
SHROOM1-203ENST00000378679 ZNF649Q9BS31 505 aa12.52□□□□□ -0.4
SHROOM1-203ENST00000378679 TINAGL1Q9GZM7 467 aaPredicted RBP12.52□□□□□ -0.4
SHROOM1-203ENST00000378679 PCDHB10Q9UN67 800 aa12.52□□□□□ -0.4
SHROOM1-203ENST00000378679 KIF26BQ2KJY2 2108 aa12.52□□□□□ -0.4
SHROOM1-203ENST00000378679 C1orf196B1AJZ1 125 aa12.52□□□□□ -0.41
SHROOM1-203ENST00000378679 PHF1O43189 567 aaPredicted RBP12.52□□□□□ -0.41
SHROOM1-203ENST00000378679 OR5H8P0DN80 308 aa12.52□□□□□ -0.41
SHROOM1-203ENST00000378679 AKR1C3P42330 323 aa12.52□□□□□ -0.41
SHROOM1-203ENST00000378679 PMP22Q01453 160 aa12.52□□□□□ -0.41
SHROOM1-203ENST00000378679 OR8B8Q15620 311 aa12.52□□□□□ -0.41
SHROOM1-203ENST00000378679 TSC22D1Q15714 1073 aa12.52□□□□□ -0.41
SHROOM1-203ENST00000378679 ST3GAL2Q16842 350 aa12.52□□□□□ -0.41
SHROOM1-203ENST00000378679 SLC30A7Q8NEW0 376 aa12.52□□□□□ -0.41
SHROOM1-203ENST00000378679 MARCH1Q8TCQ1 289 aa12.52□□□□□ -0.41
SHROOM1-203ENST00000378679 HGDQ93099 445 aa12.52□□□□□ -0.41
SHROOM1-203ENST00000378679 KIRREL1Q96J84 757 aa12.52□□□□□ -0.41
SHROOM1-203ENST00000378679 C1orf123Q9NWV4 160 aa12.52□□□□□ -0.41
SHROOM1-203ENST00000378679 ZNF391Q9UJN7 358 aa12.52□□□□□ -0.41
SHROOM1-203ENST00000378679 MYLKQ15746 1914 aa12.52□□□□□ -0.41
SHROOM1-203ENST00000378679 LOC101059948A0A1B0GTJ6 334 aa12.52□□□□□ -0.41
SHROOM1-203ENST00000378679 RAB19A4D1S5 217 aa12.52□□□□□ -0.41
SHROOM1-203ENST00000378679 SIRPB1O00241 398 aa12.52□□□□□ -0.41
SHROOM1-203ENST00000378679 RAB6AP20340 208 aa12.52□□□□□ -0.41
SHROOM1-203ENST00000378679 RPS23P62266 143 aaKnown RBP12.52□□□□□ -0.41
SHROOM1-203ENST00000378679 LPCAT3Q6P1A2 487 aa12.52□□□□□ -0.41
SHROOM1-203ENST00000378679 GPR35Q9HC97 309 aa12.52□□□□□ -0.41
SHROOM1-203ENST00000378679 NIT2Q9NQR4 276 aa12.52□□□□□ -0.41
SHROOM1-203ENST00000378679 MTFP1Q9UDX5 166 aa12.52□□□□□ -0.41
SHROOM1-203ENST00000378679 IGLV1-36A0A0B4J1U3 117 aa12.51□□□□□ -0.41
SHROOM1-203ENST00000378679 SMCO3A2RU48 225 aa12.51□□□□□ -0.41
SHROOM1-203ENST00000378679 TUBG1P23258 451 aa12.51□□□□□ -0.41
SHROOM1-203ENST00000378679 PPT1P50897 306 aa12.51□□□□□ -0.41
SHROOM1-203ENST00000378679 BAMBIQ13145 260 aa12.51□□□□□ -0.41
SHROOM1-203ENST00000378679 CSRP2Q16527 193 aa12.51□□□□□ -0.41
SHROOM1-203ENST00000378679 NHLRC1Q6VVB1 395 aa12.51□□□□□ -0.41
SHROOM1-203ENST00000378679 ARHGAP5-AS1Q96IT6 56 aa12.51□□□□□ -0.41
SHROOM1-203ENST00000378679 KCNK17Q96T54 332 aa12.51□□□□□ -0.41
SHROOM1-203ENST00000378679 C20orf24Q9BUV8 137 aa12.51□□□□□ -0.41
SHROOM1-203ENST00000378679 AKAP6Q13023 2319 aa12.51□□□□□ -0.41
SHROOM1-203ENST00000378679 PPP3CBP16298 524 aa12.51□□□□□ -0.41
SHROOM1-203ENST00000378679 OR3A4PP47883 348 aa12.51□□□□□ -0.41
SHROOM1-203ENST00000378679 ERVK-16P61578 105 aa12.51□□□□□ -0.41
SHROOM1-203ENST00000378679 LINC01590Q5TEZ4 76 aa12.51□□□□□ -0.41
SHROOM1-203ENST00000378679 TMUB2Q71RG4 321 aa12.51□□□□□ -0.41
SHROOM1-203ENST00000378679 C20orf196Q8IYI0 205 aa12.51□□□□□ -0.41
SHROOM1-203ENST00000378679 NFAM1Q8NET5 270 aaPredicted RBP12.51□□□□□ -0.41
SHROOM1-203ENST00000378679 CXorf58Q96LI9 332 aa12.51□□□□□ -0.41
SHROOM1-203ENST00000378679 ZNF426Q9BUY5 554 aa12.51□□□□□ -0.41
SHROOM1-203ENST00000378679 DIDO1Q9BTC0 2240 aaKnown RBP12.51□□□□□ -0.41
SHROOM1-203ENST00000378679 ATP23Q9Y6H3 246 aa12.51□□□□□ -0.41
SHROOM1-203ENST00000378679 RPA2P15927 270 aa12.5□□□□□ -0.41
SHROOM1-203ENST00000378679 RPS4XP62701 263 aaKnown RBP12.5□□□□□ -0.41
SHROOM1-203ENST00000378679 WDSUB1Q8N9V3 476 aa12.5□□□□□ -0.41
SHROOM1-203ENST00000378679 GLYATL2Q8WU03 294 aa12.5□□□□□ -0.41
SHROOM1-203ENST00000378679 FGF11Q92914 225 aa12.5□□□□□ -0.41
SHROOM1-203ENST00000378679 IMMP1LQ96LU5 166 aa12.5□□□□□ -0.41
SHROOM1-203ENST00000378679 SLC17A5Q9NRA2 495 aa12.5□□□□□ -0.41
SHROOM1-203ENST00000378679 TMEM38BQ9NVV0 291 aa12.5□□□□□ -0.41
SHROOM1-203ENST00000378679 INTS1Q8N201 2190 aaKnown RBP12.5□□□□□ -0.41
SHROOM1-203ENST00000378679 IGF2P01344 180 aa12.5□□□□□ -0.41
SHROOM1-203ENST00000378679 CA6P23280 308 aa12.5□□□□□ -0.41
SHROOM1-203ENST00000378679 GLRA1P23415 457 aa12.5□□□□□ -0.41
SHROOM1-203ENST00000378679 KIR3DL2P43630 455 aa12.5□□□□□ -0.41
SHROOM1-203ENST00000378679 ZNF83P51522 516 aa12.5□□□□□ -0.41
SHROOM1-203ENST00000378679 GNG3P63215 75 aa12.5□□□□□ -0.41
SHROOM1-203ENST00000378679 PXT1Q8NFP0 134 aa12.5□□□□□ -0.41
SHROOM1-203ENST00000378679 ANGPTL6Q8NI99 470 aa12.5□□□□□ -0.41
SHROOM1-203ENST00000378679 YIPF5Q969M3 257 aa12.5□□□□□ -0.41
SHROOM1-203ENST00000378679 GPR27Q9NS67 375 aa12.5□□□□□ -0.41
SHROOM1-203ENST00000378679 DECR2Q9NUI1 292 aa12.5□□□□□ -0.41
SHROOM1-203ENST00000378679 MRPL22Q9NWU5 206 aaKnown RBP12.5□□□□□ -0.41
SHROOM1-203ENST00000378679 FLVCR1Q9Y5Y0 555 aa12.5□□□□□ -0.41
SHROOM1-203ENST00000378679 SERPINE3A8MV23 424 aa12.5□□□□□ -0.41
SHROOM1-203ENST00000378679 H7C1Q1 480 aa12.5□□□□□ -0.41
SHROOM1-203ENST00000378679 PYCARD-AS1I3L0S3 204 aa12.5□□□□□ -0.41
SHROOM1-203ENST00000378679 TRAF3IP2O43734 574 aaPredicted RBP12.5□□□□□ -0.41
SHROOM1-203ENST00000378679 SPINK2P20155 84 aa12.5□□□□□ -0.41
SHROOM1-203ENST00000378679 ZFP36L1Q07352 338 aaKnown RBP12.5□□□□□ -0.41
SHROOM1-203ENST00000378679 ARL11Q969Q4 196 aa12.5□□□□□ -0.41
SHROOM1-203ENST00000378679 RTN4RQ9BZR6 473 aa12.5□□□□□ -0.41
SHROOM1-203ENST00000378679 CHCHD2Q9Y6H1 151 aaPredicted RBP12.5□□□□□ -0.41
SHROOM1-203ENST00000378679 XIRP2A4UGR9 3374 aa12.49□□□□□ -0.41
SHROOM1-203ENST00000378679 B3GALNT1O75752 331 aa12.49□□□□□ -0.41
SHROOM1-203ENST00000378679 PNPP00491 289 aa12.49□□□□□ -0.41
SHROOM1-203ENST00000378679 UMODP07911 640 aa12.49□□□□□ -0.41
SHROOM1-203ENST00000378679 ZNF468Q5VIY5 522 aaPredicted RBP12.49□□□□□ -0.41
SHROOM1-203ENST00000378679 TIPARPQ7Z3E1 657 aaKnown RBP12.49□□□□□ -0.41
SHROOM1-203ENST00000378679 DPPA2Q7Z7J5 298 aa12.49□□□□□ -0.41
SHROOM1-203ENST00000378679 LILRB2Q8N423 598 aa12.49□□□□□ -0.41
SHROOM1-203ENST00000378679 OR51H1Q8NH63 302 aa12.49□□□□□ -0.41
SHROOM1-203ENST00000378679 SEH1LQ96EE3 360 aa12.49□□□□□ -0.41
SHROOM1-203ENST00000378679 CNTNAP3BQ96NU0 1288 aa12.49□□□□□ -0.41
SHROOM1-203ENST00000378679 SLC7A10Q9NS82 523 aa12.49□□□□□ -0.41
SHROOM1-203ENST00000378679 A0A0C4DFX4 3053 aa12.49□□□□□ -0.41
SHROOM1-203ENST00000378679 MEIKINA0A087WXM9 373 aa12.49□□□□□ -0.41
SHROOM1-203ENST00000378679 SH2D1BO14796 132 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms