RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 LHFPL1Q86WI0 220 aa12.07□□□□□ -0.48
USP49-201ENST00000373006 SCGB3A2Q96PL1 93 aa12.07□□□□□ -0.48
USP49-201ENST00000373006 OCSTAMPQ9BR26 566 aa12.07□□□□□ -0.48
USP49-201ENST00000373006 B3GALT5Q9Y2C3 310 aa12.07□□□□□ -0.48
USP49-201ENST00000373006 MEMO1Q9Y316 297 aa12.07□□□□□ -0.48
USP49-201ENST00000373006 FBXO7Q9Y3I1 522 aa12.07□□□□□ -0.48
USP49-201ENST00000373006 PHF3Q92576 2039 aaKnown RBP12.07□□□□□ -0.48
USP49-201ENST00000373006 IGKV1D-8A0A087WSZ0 117 aa12.07□□□□□ -0.48
USP49-201ENST00000373006 A0A087X0M5 115 aa12.07□□□□□ -0.48
USP49-201ENST00000373006 A0A1B0GX30 115 aa12.07□□□□□ -0.48
USP49-201ENST00000373006 A6NIZ1 184 aa12.07□□□□□ -0.48
USP49-201ENST00000373006 TERTO14746 1132 aaKnown RBP12.07□□□□□ -0.48
USP49-201ENST00000373006 JTBO76095 146 aa12.07□□□□□ -0.48
USP49-201ENST00000373006 SNRPCP09234 159 aaKnown RBP12.07□□□□□ -0.48
USP49-201ENST00000373006 GIMD1P0DJR0 217 aa12.07□□□□□ -0.48
USP49-201ENST00000373006 BLVRBP30043 206 aaPredicted RBP12.07□□□□□ -0.48
USP49-201ENST00000373006 RAP1BP61224 184 aa12.07□□□□□ -0.48
USP49-201ENST00000373006 RAP1AP62834 184 aa12.07□□□□□ -0.48
USP49-201ENST00000373006 CHRFAM7AQ494W8 412 aa12.07□□□□□ -0.48
USP49-201ENST00000373006 CARD17Q5XLA6 110 aa12.07□□□□□ -0.48
USP49-201ENST00000373006 H1FNTQ75WM6 255 aaPredicted RBP12.07□□□□□ -0.48
USP49-201ENST00000373006 WWTR1Q9GZV5 400 aa12.07□□□□□ -0.48
USP49-201ENST00000373006 METTL1Q9UBP6 276 aaKnown RBP12.07□□□□□ -0.48
USP49-201ENST00000373006 PISDQ9UG56 409 aa12.07□□□□□ -0.48
USP49-201ENST00000373006 CYP8B1Q9UNU6 501 aa12.07□□□□□ -0.48
USP49-201ENST00000373006 AP4M1O00189 453 aa12.06□□□□□ -0.48
USP49-201ENST00000373006 SEMA4FO95754 770 aa12.06□□□□□ -0.48
USP49-201ENST00000373006 SNCAP37840 140 aa12.06□□□□□ -0.48
USP49-201ENST00000373006 DLX2Q07687 328 aaPredicted RBP12.06□□□□□ -0.48
USP49-201ENST00000373006 ZNF674Q2M3X9 581 aa12.06□□□□□ -0.48
USP49-201ENST00000373006 SP6Q3SY56 376 aa12.06□□□□□ -0.48
USP49-201ENST00000373006 CDCP2Q5VXM1 449 aa12.06□□□□□ -0.48
USP49-201ENST00000373006 ZNF529Q6P280 563 aa12.06□□□□□ -0.48
USP49-201ENST00000373006 OR56B1Q8NGI3 324 aa12.06□□□□□ -0.48
USP49-201ENST00000373006 RNASE11Q8TAA1 199 aaKnown RBP12.06□□□□□ -0.48
USP49-201ENST00000373006 PHOSPHO2Q8TCD6 241 aa12.06□□□□□ -0.48
USP49-201ENST00000373006 GTF3AQ92664 365 aaKnown RBP12.06□□□□□ -0.48
USP49-201ENST00000373006 DAZLQ92904 295 aaKnown RBP12.06□□□□□ -0.48
USP49-201ENST00000373006 MRPL24Q96A35 216 aaKnown RBP12.06□□□□□ -0.48
USP49-201ENST00000373006 MISP3Q96FF7 219 aa12.06□□□□□ -0.48
USP49-201ENST00000373006 PRRX2Q99811 253 aa12.06□□□□□ -0.48
USP49-201ENST00000373006 ELL3Q9HB65 397 aaPredicted RBP12.06□□□□□ -0.48
USP49-201ENST00000373006 IGHV3-20A0A0C4DH32 117 aa12.06□□□□□ -0.48
USP49-201ENST00000373006 SPTY2D1-AS1A0A0U1RR47 76 aa12.06□□□□□ -0.48
USP49-201ENST00000373006 UMAD1C9J7I0 102 aa12.06□□□□□ -0.48
USP49-201ENST00000373006 PHOX2AO14813 284 aa12.06□□□□□ -0.48
USP49-201ENST00000373006 RER1O15258 196 aa12.06□□□□□ -0.48
USP49-201ENST00000373006 ZNF17P17021 662 aa12.06□□□□□ -0.48
USP49-201ENST00000373006 RABIFP47224 123 aa12.06□□□□□ -0.48
USP49-201ENST00000373006 DAP3P51398 398 aaKnown RBP12.06□□□□□ -0.48
USP49-201ENST00000373006 NUBP1P53384 320 aa12.06□□□□□ -0.48
USP49-201ENST00000373006 ZNF121P58317 390 aaPredicted RBP12.06□□□□□ -0.48
USP49-201ENST00000373006 HIST2H3AQ71DI3 136 aa12.06□□□□□ -0.48
USP49-201ENST00000373006 OR8B12Q8NGG6 310 aa12.06□□□□□ -0.48
USP49-201ENST00000373006 FNDC9Q8TBE3 224 aa12.06□□□□□ -0.48
USP49-201ENST00000373006 MESP1Q9BRJ9 268 aa12.06□□□□□ -0.48
USP49-201ENST00000373006 OR10A2Q9H208 303 aa12.06□□□□□ -0.48
USP49-201ENST00000373006 TMPRSS5Q9H3S3 457 aa12.06□□□□□ -0.48
USP49-201ENST00000373006 C14orf166Q9Y224 244 aaKnown RBP12.06□□□□□ -0.48
USP49-201ENST00000373006 STARD10Q9Y365 291 aa12.06□□□□□ -0.48
USP49-201ENST00000373006 PCDH15Q96QU1 1955 aa12.06□□□□□ -0.48
USP49-201ENST00000373006 C5orf63A6NC05 138 aa12.06□□□□□ -0.48
USP49-201ENST00000373006 PRH1P02810 166 aa12.06□□□□□ -0.48
USP49-201ENST00000373006 SERPINA2P20848 420 aa12.06□□□□□ -0.48
USP49-201ENST00000373006 PAX6P26367 422 aa12.06□□□□□ -0.48
USP49-201ENST00000373006 GALNSP34059 522 aa12.06□□□□□ -0.48
USP49-201ENST00000373006 GABRA4P48169 554 aa12.06□□□□□ -0.48
USP49-201ENST00000373006 SULT1A1P50225 295 aa12.06□□□□□ -0.48
USP49-201ENST00000373006 BEND4Q6ZU67 534 aa12.06□□□□□ -0.48
USP49-201ENST00000373006 NKX2-4Q9H2Z4 354 aa12.06□□□□□ -0.48
USP49-201ENST00000373006 SUSD2Q9UGT4 822 aa12.06□□□□□ -0.48
USP49-201ENST00000373006 IGKV1-9A0A0C4DH69 117 aa12.05□□□□□ -0.48
USP49-201ENST00000373006 EPOPA6NHQ4 379 aa12.05□□□□□ -0.48
USP49-201ENST00000373006 TCAPO15273 167 aa12.05□□□□□ -0.48
USP49-201ENST00000373006 XRCC2O43543 280 aa12.05□□□□□ -0.48
USP49-201ENST00000373006 DIRAS3O95661 229 aa12.05□□□□□ -0.48
USP49-201ENST00000373006 IGHV2-5P01817 119 aa12.05□□□□□ -0.48
USP49-201ENST00000373006 THBS4P35443 961 aa12.05□□□□□ -0.48
USP49-201ENST00000373006 CAMLGP49069 296 aa12.05□□□□□ -0.48
USP49-201ENST00000373006 RSPO4Q2I0M5 234 aaPredicted RBP12.05□□□□□ -0.48
USP49-201ENST00000373006 GGNBP1Q5YKI7 109 aa12.05□□□□□ -0.48
USP49-201ENST00000373006 FAM57BQ71RH2 274 aa12.05□□□□□ -0.48
USP49-201ENST00000373006 LIN37Q96GY3 246 aaPredicted RBP12.05□□□□□ -0.48
USP49-201ENST00000373006 ZNF2Q9BSG1 426 aaPredicted RBP12.05□□□□□ -0.48
USP49-201ENST00000373006 HDHD3Q9BSH5 251 aaPredicted RBP12.05□□□□□ -0.48
USP49-201ENST00000373006 URM1Q9BTM9 101 aaKnown RBP12.05□□□□□ -0.48
USP49-201ENST00000373006 SH3BGRL3Q9H299 93 aa12.05□□□□□ -0.48
USP49-201ENST00000373006 CUTCQ9NTM9 273 aa12.05□□□□□ -0.48
USP49-201ENST00000373006 C1orf123Q9NWV4 160 aa12.05□□□□□ -0.48
USP49-201ENST00000373006 FBLN5Q9UBX5 448 aa12.05□□□□□ -0.48
USP49-201ENST00000373006 LHFPL6Q9Y693 200 aa12.05□□□□□ -0.48
USP49-201ENST00000373006 PIAS3Q9Y6X2 628 aa12.05□□□□□ -0.48
USP49-201ENST00000373006 A0A1W2PQD3 144 aa12.05□□□□□ -0.48
USP49-201ENST00000373006 DEDDO75618 318 aa12.05□□□□□ -0.48
USP49-201ENST00000373006 IGHV4-34P06331 123 aa12.05□□□□□ -0.48
USP49-201ENST00000373006 CAPZBP47756 277 aa12.05□□□□□ -0.48
USP49-201ENST00000373006 ASCL1P50553 236 aa12.05□□□□□ -0.48
USP49-201ENST00000373006 C1orf189Q5VU69 101 aa12.05□□□□□ -0.48
USP49-201ENST00000373006 EMG1Q92979 244 aaKnown RBP12.05□□□□□ -0.48
USP49-201ENST00000373006 GPR61Q9BZJ8 451 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms