RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 CT45A1Q5HYN5 189 aa13.19□□□□□ -0.3
COL17A1-201ENST00000353479 SPANXN5Q5MJ07 72 aa13.19□□□□□ -0.3
COL17A1-201ENST00000353479 CT45A3Q8NHU0 189 aa13.19□□□□□ -0.3
COL17A1-201ENST00000353479 CLDN23Q96B33 292 aa13.19□□□□□ -0.3
COL17A1-201ENST00000353479 MALSU1Q96EH3 234 aa13.19□□□□□ -0.3
COL17A1-201ENST00000353479 C3orf80F5H4A9 247 aa13.18□□□□□ -0.3
COL17A1-201ENST00000353479 MFSD4AQ8N468 514 aa13.18□□□□□ -0.3
COL17A1-201ENST00000353479 ZNF385AQ96PM9 386 aaKnown RBP13.18□□□□□ -0.3
COL17A1-201ENST00000353479 A0A0J9YW62 118 aa13.18□□□□□ -0.3
COL17A1-201ENST00000353479 GABRB1P18505 474 aa13.18□□□□□ -0.3
COL17A1-201ENST00000353479 CREB3L2Q70SY1 520 aa13.18□□□□□ -0.3
COL17A1-201ENST00000353479 CADM3Q8N126 398 aa13.18□□□□□ -0.3
COL17A1-201ENST00000353479 LRP3O75074 770 aa13.18□□□□□ -0.3
COL17A1-201ENST00000353479 DFFBO76075 338 aa13.18□□□□□ -0.3
COL17A1-201ENST00000353479 TIAF1O95411 115 aa13.18□□□□□ -0.3
COL17A1-201ENST00000353479 ZFP36L2P47974 494 aaKnown RBP13.18□□□□□ -0.3
COL17A1-201ENST00000353479 OXA1LQ15070 435 aa13.18□□□□□ -0.3
COL17A1-201ENST00000353479 OR14K1Q8NGZ2 314 aa13.18□□□□□ -0.3
COL17A1-201ENST00000353479 FAAP24Q9BTP7 215 aa13.18□□□□□ -0.3
COL17A1-201ENST00000353479 CNTD2Q9H8S5 307 aa13.18□□□□□ -0.3
COL17A1-201ENST00000353479 CYSLTR2Q9NS75 346 aa13.18□□□□□ -0.3
COL17A1-201ENST00000353479 SSSCA1O60232 199 aa13.18□□□□□ -0.3
COL17A1-201ENST00000353479 GALP22466 123 aa13.18□□□□□ -0.3
COL17A1-201ENST00000353479 RAB13P51153 203 aa13.18□□□□□ -0.3
COL17A1-201ENST00000353479 ATP1A1-AS1Q5TC04 95 aa13.18□□□□□ -0.3
COL17A1-201ENST00000353479 FRZBQ92765 325 aa13.18□□□□□ -0.3
COL17A1-201ENST00000353479 DAZAP1Q96EP5 407 aaKnown RBP13.18□□□□□ -0.3
COL17A1-201ENST00000353479 MVDP53602 400 aa13.18□□□□□ -0.3
COL17A1-201ENST00000353479 RAB5BP61020 215 aa13.18□□□□□ -0.3
COL17A1-201ENST00000353479 TMEM251Q8N6I4 163 aa13.18□□□□□ -0.3
COL17A1-201ENST00000353479 TMEM229BQ8NBD8 167 aa13.18□□□□□ -0.3
COL17A1-201ENST00000353479 UHRF2Q96PU4 802 aa13.18□□□□□ -0.3
COL17A1-201ENST00000353479 SMIM10L1P0DMW3 83 aa13.17□□□□□ -0.3
COL17A1-201ENST00000353479 HTD2P86397 168 aa13.17□□□□□ -0.3
COL17A1-201ENST00000353479 ZNF816Q0VGE8 651 aaPredicted RBP13.17□□□□□ -0.3
COL17A1-201ENST00000353479 C6orf201Q7Z4U5 140 aa13.17□□□□□ -0.3
COL17A1-201ENST00000353479 SLC51BQ86UW2 128 aa13.17□□□□□ -0.3
COL17A1-201ENST00000353479 SMIM10Q96HG1 83 aa13.17□□□□□ -0.3
COL17A1-201ENST00000353479 FYTTD1Q96QD9 318 aaKnown RBP13.17□□□□□ -0.3
COL17A1-201ENST00000353479 OR2H1Q9GZK4 316 aa13.17□□□□□ -0.3
COL17A1-201ENST00000353479 COMMD5Q9GZQ3 224 aa13.17□□□□□ -0.3
COL17A1-201ENST00000353479 NTMQ9P121 344 aa13.17□□□□□ -0.3
COL17A1-201ENST00000353479 NGFRP08138 427 aa13.17□□□□□ -0.3
COL17A1-201ENST00000353479 GIPP09681 153 aaPredicted RBP13.17□□□□□ -0.3
COL17A1-201ENST00000353479 IL11P20809 199 aa13.17□□□□□ -0.3
COL17A1-201ENST00000353479 ELLP55199 621 aaPredicted RBP13.17□□□□□ -0.3
COL17A1-201ENST00000353479 SSBP1Q04837 148 aaKnown RBP13.17□□□□□ -0.3
COL17A1-201ENST00000353479 TMUB2Q71RG4 321 aa13.17□□□□□ -0.3
COL17A1-201ENST00000353479 OR5V1Q9UGF6 321 aa13.17□□□□□ -0.3
COL17A1-201ENST00000353479 SNRNP70P08621 437 aaKnown RBP13.17□□□□□ -0.3
COL17A1-201ENST00000353479 ADRA2CP18825 462 aa13.17□□□□□ -0.3
COL17A1-201ENST00000353479 FUT5Q11128 374 aa13.17□□□□□ -0.3
COL17A1-201ENST00000353479 RFESDQ8TAC1 157 aa13.17□□□□□ -0.3
COL17A1-201ENST00000353479 TRMT61AQ96FX7 289 aaKnown RBP13.17□□□□□ -0.3
COL17A1-201ENST00000353479 GMPPAQ96IJ6 420 aaPredicted RBP13.17□□□□□ -0.3
COL17A1-201ENST00000353479 SLIRPQ9GZT3 109 aaKnown RBP13.17□□□□□ -0.3
COL17A1-201ENST00000353479 CCL21O00585 134 aa13.17□□□□□ -0.3
COL17A1-201ENST00000353479 SEMG1P04279 462 aa13.17□□□□□ -0.3
COL17A1-201ENST00000353479 HIST1H1DP16402 221 aaKnown RBP13.17□□□□□ -0.3
COL17A1-201ENST00000353479 PCMT1P22061 227 aa13.17□□□□□ -0.3
COL17A1-201ENST00000353479 PPT1P50897 306 aa13.17□□□□□ -0.3
COL17A1-201ENST00000353479 SLC35E1Q96K37 410 aa13.17□□□□□ -0.3
COL17A1-201ENST00000353479 ANGPTL4Q9BY76 406 aa13.17□□□□□ -0.3
COL17A1-201ENST00000353479 TMEM38BQ9NVV0 291 aa13.17□□□□□ -0.3
COL17A1-201ENST00000353479 FRRS1LQ9P0K9 344 aa13.17□□□□□ -0.3
COL17A1-201ENST00000353479 IL17BQ9UHF5 180 aa13.17□□□□□ -0.3
COL17A1-201ENST00000353479 HBE1P02100 147 aa13.16□□□□□ -0.3
COL17A1-201ENST00000353479 IAPPP10997 89 aa13.16□□□□□ -0.3
COL17A1-201ENST00000353479 RPL11P62913 178 aaKnown RBP13.16□□□□□ -0.3
COL17A1-201ENST00000353479 CDC20Q12834 499 aa13.16□□□□□ -0.3
COL17A1-201ENST00000353479 LINC00303Q3SY05 128 aa13.16□□□□□ -0.3
COL17A1-201ENST00000353479 TMEM105Q8N8V8 129 aa13.16□□□□□ -0.3
COL17A1-201ENST00000353479 RNF141Q8WVD5 230 aa13.16□□□□□ -0.3
COL17A1-201ENST00000353479 CXXC4Q9H2H0 198 aa13.16□□□□□ -0.3
COL17A1-201ENST00000353479 FOXJ2Q9P0K8 574 aa13.16□□□□□ -0.3
COL17A1-201ENST00000353479 DEFB108AA8MXU0 73 aa13.16□□□□□ -0.3
COL17A1-201ENST00000353479 GPR37O15354 613 aa13.16□□□□□ -0.3
COL17A1-201ENST00000353479 AKR7A2O43488 359 aa13.16□□□□□ -0.3
COL17A1-201ENST00000353479 GNG10P50151 68 aa13.16□□□□□ -0.3
COL17A1-201ENST00000353479 DMKNQ6E0U4 476 aaPredicted RBP13.16□□□□□ -0.3
COL17A1-201ENST00000353479 RBMS3Q6XE24 437 aaKnown RBP13.16□□□□□ -0.3
COL17A1-201ENST00000353479 CCDC190Q86UF4 302 aa13.16□□□□□ -0.3
COL17A1-201ENST00000353479 OR8U1Q8NH10 309 aa13.16□□□□□ -0.3
COL17A1-201ENST00000353479 TERB2Q8NHR7 220 aa13.16□□□□□ -0.3
COL17A1-201ENST00000353479 KCNIP2Q9NS61 270 aa13.16□□□□□ -0.3
COL17A1-201ENST00000353479 AQP7O14520 342 aa13.16□□□□□ -0.3
COL17A1-201ENST00000353479 ZNF354AO60765 605 aaPredicted RBP13.16□□□□□ -0.3
COL17A1-201ENST00000353479 YIF1AO95070 293 aa13.16□□□□□ -0.3
COL17A1-201ENST00000353479 FBXW9Q5XUX1 488 aa13.16□□□□□ -0.3
COL17A1-201ENST00000353479 OR10AD1Q8NGE0 317 aa13.16□□□□□ -0.3
COL17A1-201ENST00000353479 OR52B4Q8NGK2 314 aa13.16□□□□□ -0.3
COL17A1-201ENST00000353479 SLC17A5Q9NRA2 495 aa13.16□□□□□ -0.3
COL17A1-201ENST00000353479 PATJQ8NI35 1801 aa13.16□□□□□ -0.3
COL17A1-201ENST00000353479 DNPH1O43598 174 aa13.16□□□□□ -0.3
COL17A1-201ENST00000353479 IGLV3-19P01714 112 aa13.16□□□□□ -0.3
COL17A1-201ENST00000353479 COX6A1P12074 109 aa13.16□□□□□ -0.3
COL17A1-201ENST00000353479 CSRP2Q16527 193 aa13.16□□□□□ -0.3
COL17A1-201ENST00000353479 MOB3BQ86TA1 216 aa13.16□□□□□ -0.3
COL17A1-201ENST00000353479 PINX1Q96BK5 328 aaKnown RBP13.16□□□□□ -0.3
COL17A1-201ENST00000353479 CHST6Q9GZX3 395 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms