RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 PDE6DO43924 150 aa12.58□□□□□ -0.4
CCDC88A-201ENST00000263630 COL8A1P27658 744 aa12.58□□□□□ -0.4
CCDC88A-201ENST00000263630 PTGFRP43088 359 aa12.58□□□□□ -0.4
CCDC88A-201ENST00000263630 ARIH2OSQ8N7S6 290 aa12.58□□□□□ -0.4
CCDC88A-201ENST00000263630 FAM208AQ9UK61 1670 aaKnown RBP12.58□□□□□ -0.4
CCDC88A-201ENST00000263630 CRYABP02511 175 aaKnown RBP12.58□□□□□ -0.4
CCDC88A-201ENST00000263630 HDAC8Q9BY41 377 aa12.58□□□□□ -0.4
CCDC88A-201ENST00000263630 UBR2Q8IWV8 1755 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 OR1N1Q8NGS0 311 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 TBX15Q96SF7 602 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 FAM206AQ9NX38 181 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 CLEC2DQ9UHP7 191 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 POMT2Q9UKY4 750 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 GAGE10A6NGK3 116 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 LINC01387J3KSC0 135 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 SMPD2O60906 423 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 FPR2P25090 351 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 MEOX2P50222 304 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 GABRA6Q16445 453 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 KHDC3LQ587J8 217 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 NHLRC1Q6VVB1 395 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 MS4A8Q9BY19 250 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 ANKRD10Q9NXR5 420 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 SMIM6P0DI80 62 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 CST7O76096 145 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 CEBPBP17676 345 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 DUSP5Q16690 384 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 ROBO4Q8WZ75 1007 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 OR2D2Q9H210 308 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 SLC25A22Q9H936 323 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 TP53BP1Q12888 1972 aaPredicted RBP12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 FBLL1A6NHQ2 334 aaKnown RBP12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 ZNF749O43361 778 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 MBTPS2O43462 519 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 MBPP02686 304 aaPredicted RBP12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 SLC19A1P41440 591 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 LYZP61626 148 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 FAM78BQ5VT40 261 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 SLC25A26Q70HW3 274 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 WDR89Q96FK6 387 aaPredicted RBP12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 COL9A2Q14055 689 aaPredicted RBP12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 VWA2Q5GFL6 755 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 C12orf54Q6X4T0 127 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 FBXO27Q8NI29 283 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 DERL3Q96Q80 235 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 C1QTNF6Q9BXI9 259 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 DUSP21Q9H596 190 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 MSL2Q9HCI7 577 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 TECRQ9NZ01 308 aaKnown RBP12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 CDC42EP3Q9UKI2 254 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 MAP1LC3B2A6NCE7 125 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 MAP1LC3BQ9GZQ8 125 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 POM121BA6NF01 834 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 GPNMBQ14956 572 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 NKAIN2Q5VXU1 208 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 VSTM2AQ8TAG5 236 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 ISL2Q96A47 359 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 RAXQ9Y2V3 346 aa12.57□□□□□ -0.4
CCDC88A-201ENST00000263630 FAM74A7A6NL05 159 aa12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 TNFSF11O14788 317 aa12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 APCSP02743 223 aa12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 FAHP16930 419 aa12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 ZNF25P17030 456 aaPredicted RBP12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 HES3Q5TGS1 186 aa12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 PTRH1Q86Y79 214 aaKnown RBP12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 ZIC5Q96T25 663 aa12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 CMC2Q9NRP2 79 aa12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 OR51B4Q9Y5P0 310 aa12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 H7C2G1 150 aa12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 ZNF253O75346 499 aa12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 SEMG1P04279 462 aa12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 OR1L6Q8NGR2 347 aa12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 HDGFL3Q9Y3E1 203 aa12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 DGCR2P98153 550 aa12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 CDC20Q12834 499 aa12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 ASTLQ6HA08 431 aaPredicted RBP12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 OR10G8Q8NGN5 311 aa12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 SNRNP40Q96DI7 357 aaKnown RBP12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 LAT2Q9GZY6 243 aa12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 GHRHP01286 108 aa12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 THBS4P35443 961 aa12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 MCHR2Q969V1 340 aa12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 SCMH1Q96GD3 660 aa12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 MAP6Q96JE9 813 aa12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 TRAV1-2A0A0B4J238 106 aa12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 PRSS37A4D1T9 235 aa12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 HTN1P15515 57 aa12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 CEACAM6P40199 344 aa12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 OR52B4Q8NGK2 314 aa12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 EMC6Q9BV81 110 aa12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 NACAE9PAV3 2078 aa12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 M0QZQ0 153 aa12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 TM4SF1P30408 202 aa12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 NMUP48645 174 aa12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 ADTRPQ96IZ2 230 aa12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 RASL12Q9NYN1 266 aa12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 H3BP45 60 aa12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 MKRN2OSH3BPM6 223 aa12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 ORM2P19652 201 aa12.56□□□□□ -0.4
CCDC88A-201ENST00000263630 WNT3P56703 355 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 90.5 ms