RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 OR8B3Q8NGG8 313 aa12.02□□□□□ -0.48
LDLR-201ENST00000252444 OR10X1Q8NGY0 326 aa12.02□□□□□ -0.48
LDLR-201ENST00000252444 OR8B2Q96RD0 313 aa12.02□□□□□ -0.48
LDLR-201ENST00000252444 TMEM246Q9BRR3 403 aa12.02□□□□□ -0.48
LDLR-201ENST00000252444 EDN3P14138 238 aa12.02□□□□□ -0.49
LDLR-201ENST00000252444 TGM1P22735 817 aa12.02□□□□□ -0.49
LDLR-201ENST00000252444 RTP5Q14D33 572 aa12.02□□□□□ -0.49
LDLR-201ENST00000252444 PRSS53Q2L4Q9 553 aa12.02□□□□□ -0.49
LDLR-201ENST00000252444 LUZP4Q9P127 313 aa12.02□□□□□ -0.49
LDLR-201ENST00000252444 C9orf172C9J069 976 aa12.02□□□□□ -0.49
LDLR-201ENST00000252444 OIP5O43482 229 aa12.02□□□□□ -0.49
LDLR-201ENST00000252444 EPHA2P29317 976 aa12.02□□□□□ -0.49
LDLR-201ENST00000252444 SLC25A40Q8TBP6 338 aa12.02□□□□□ -0.49
LDLR-201ENST00000252444 PLEKHA3Q9HB20 300 aa12.02□□□□□ -0.49
LDLR-201ENST00000252444 IGLV1-36A0A0B4J1U3 117 aa12.01□□□□□ -0.49
LDLR-201ENST00000252444 K7EPK0 472 aa12.01□□□□□ -0.49
LDLR-201ENST00000252444 CDC14BO60729 498 aa12.01□□□□□ -0.49
LDLR-201ENST00000252444 OR8U9P0C7N5 309 aa12.01□□□□□ -0.49
LDLR-201ENST00000252444 TNFSF10P50591 281 aa12.01□□□□□ -0.49
LDLR-201ENST00000252444 GPM6AP51674 278 aa12.01□□□□□ -0.49
LDLR-201ENST00000252444 COL9A2Q14055 689 aaPredicted RBP12.01□□□□□ -0.49
LDLR-201ENST00000252444 FAM71E2Q8N5Q1 922 aa12.01□□□□□ -0.49
LDLR-201ENST00000252444 ZNF71Q9NQZ8 489 aaPredicted RBP12.01□□□□□ -0.49
LDLR-201ENST00000252444 KLF4O43474 513 aa12.01□□□□□ -0.49
LDLR-201ENST00000252444 GCM2O75603 506 aaPredicted RBP12.01□□□□□ -0.49
LDLR-201ENST00000252444 AADACP22760 399 aa12.01□□□□□ -0.49
LDLR-201ENST00000252444 CFAP77Q6ZQR2 320 aa12.01□□□□□ -0.49
LDLR-201ENST00000252444 PXT1Q8NFP0 134 aa12.01□□□□□ -0.49
LDLR-201ENST00000252444 GPR137Q96N19 417 aa12.01□□□□□ -0.49
LDLR-201ENST00000252444 ZNF426Q9BUY5 554 aa12.01□□□□□ -0.49
LDLR-201ENST00000252444 IL19Q9UHD0 177 aa12.01□□□□□ -0.49
LDLR-201ENST00000252444 B8ZZF3 427 aa12.01□□□□□ -0.49
LDLR-201ENST00000252444 ZBTB25P24278 435 aa12.01□□□□□ -0.49
LDLR-201ENST00000252444 ZFP62Q8NB50 900 aaPredicted RBP12.01□□□□□ -0.49
LDLR-201ENST00000252444 BEX2Q9BXY8 128 aa12.01□□□□□ -0.49
LDLR-201ENST00000252444 BEX1Q9HBH7 125 aa12.01□□□□□ -0.49
LDLR-201ENST00000252444 LIPGQ9Y5X9 500 aa12.01□□□□□ -0.49
LDLR-201ENST00000252444 SPAG17Q6Q759 2223 aa12.01□□□□□ -0.49
LDLR-201ENST00000252444 SIRPB1O00241 398 aa12.01□□□□□ -0.49
LDLR-201ENST00000252444 TUSC2O75896 110 aa12.01□□□□□ -0.49
LDLR-201ENST00000252444 LYZL6O75951 148 aa12.01□□□□□ -0.49
LDLR-201ENST00000252444 TIAF1O95411 115 aa12.01□□□□□ -0.49
LDLR-201ENST00000252444 SOX18P35713 384 aa12.01□□□□□ -0.49
LDLR-201ENST00000252444 PLA2G7Q13093 441 aa12.01□□□□□ -0.49
LDLR-201ENST00000252444 HMGN3Q15651 99 aa12.01□□□□□ -0.49
LDLR-201ENST00000252444 TCTEX1D1Q8N7M0 179 aa12.01□□□□□ -0.49
LDLR-201ENST00000252444 CYB5R1Q9UHQ9 305 aa12.01□□□□□ -0.49
LDLR-201ENST00000252444 PHF1O43189 567 aaPredicted RBP12.01□□□□□ -0.49
LDLR-201ENST00000252444 TAGLN2P37802 199 aaKnown RBP12.01□□□□□ -0.49
LDLR-201ENST00000252444 CAV3P56539 151 aa12.01□□□□□ -0.49
LDLR-201ENST00000252444 VMA21Q3ZAQ7 101 aa12.01□□□□□ -0.49
LDLR-201ENST00000252444 ABLIM2Q6H8Q1 611 aa12.01□□□□□ -0.49
LDLR-201ENST00000252444 BHLHE23Q8NDY6 225 aa12.01□□□□□ -0.49
LDLR-201ENST00000252444 OR52I2Q8NH67 350 aa12.01□□□□□ -0.49
LDLR-201ENST00000252444 ARPC5LQ9BPX5 153 aa12.01□□□□□ -0.49
LDLR-201ENST00000252444 BANF2Q9H503 90 aa12.01□□□□□ -0.49
LDLR-201ENST00000252444 ZNF665Q9H7R5 613 aa12.01□□□□□ -0.49
LDLR-201ENST00000252444 HRASLSQ9HDD0 168 aa12.01□□□□□ -0.49
LDLR-201ENST00000252444 ANAPC1Q9H1A4 1944 aa12.01□□□□□ -0.49
LDLR-201ENST00000252444 OOEPA6NGQ2 149 aa12□□□□□ -0.49
LDLR-201ENST00000252444 PMP2P02689 132 aa12□□□□□ -0.49
LDLR-201ENST00000252444 CLDN20P56880 219 aa12□□□□□ -0.49
LDLR-201ENST00000252444 POC1BQ8TC44 478 aa12□□□□□ -0.49
LDLR-201ENST00000252444 TCTEX1D2Q8WW35 142 aa12□□□□□ -0.49
LDLR-201ENST00000252444 HLA-HP01893 362 aa12□□□□□ -0.49
LDLR-201ENST00000252444 OR5H8P0DN80 308 aa12□□□□□ -0.49
LDLR-201ENST00000252444 GZMHP20718 246 aa12□□□□□ -0.49
LDLR-201ENST00000252444 Q6ZT83 130 aa12□□□□□ -0.49
LDLR-201ENST00000252444 SRRQ9GZT4 340 aa12□□□□□ -0.49
LDLR-201ENST00000252444 C11orf54Q9H0W9 315 aaPredicted RBP12□□□□□ -0.49
LDLR-201ENST00000252444 GHITMQ9H3K2 345 aa12□□□□□ -0.49
LDLR-201ENST00000252444 MRPS18BQ9Y676 258 aaKnown RBP12□□□□□ -0.49
LDLR-201ENST00000252444 RPS10-NUDT3A0A1W2PQS6 291 aa12□□□□□ -0.49
LDLR-201ENST00000252444 ZSCAN5BA6NJL1 495 aa12□□□□□ -0.49
LDLR-201ENST00000252444 OR1S2Q8NGQ3 325 aa12□□□□□ -0.49
LDLR-201ENST00000252444 NEIL1Q96FI4 390 aaPredicted RBP12□□□□□ -0.49
LDLR-201ENST00000252444 ZNF2Q9BSG1 426 aaPredicted RBP12□□□□□ -0.49
LDLR-201ENST00000252444 HINT2Q9BX68 163 aa12□□□□□ -0.49
LDLR-201ENST00000252444 PRO3102Q9H379 93 aa12□□□□□ -0.49
LDLR-201ENST00000252444 TREM1Q9NP99 234 aa12□□□□□ -0.49
LDLR-201ENST00000252444 GBF1Q92538 1859 aa12□□□□□ -0.49
LDLR-201ENST00000252444 H7C2Y5 167 aa12□□□□□ -0.49
LDLR-201ENST00000252444 EIF4EP06730 217 aaKnown RBP12□□□□□ -0.49
LDLR-201ENST00000252444 RAB13P51153 203 aa12□□□□□ -0.49
LDLR-201ENST00000252444 TIMM23BQ5SRD1 257 aa12□□□□□ -0.49
LDLR-201ENST00000252444 ANKRD34AQ69YU3 496 aa12□□□□□ -0.49
LDLR-201ENST00000252444 SCCPDHQ8NBX0 429 aa12□□□□□ -0.49
LDLR-201ENST00000252444 TRBV5-5A0A0J9YX44 114 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 ST8SIA3O43173 380 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 AKR7A2O43488 359 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 HRASP01112 189 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 COX6B1P14854 86 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 GABRB1P18505 474 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 S100PP25815 95 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 FOXO1Q12778 655 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 EDDM3AQ14507 147 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 PXDC1Q5TGL8 231 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 NSUN5P2Q63ZY6 315 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 RPUSD3Q6P087 351 aaKnown RBP11.99□□□□□ -0.49
LDLR-201ENST00000252444 RBMS3Q6XE24 437 aaKnown RBP11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 84.4 ms