RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 LCN1P1Q5VSP4 162 aa9.8□□□□□ -0.84
UPF3B-204ENST00000619445 PLBD1Q6P4A8 553 aa9.8□□□□□ -0.84
UPF3B-204ENST00000619445 ZNF788Q6ZQV5 615 aa9.8□□□□□ -0.84
UPF3B-204ENST00000619445 KRT77Q7Z794 578 aa9.8□□□□□ -0.84
UPF3B-204ENST00000619445 IQCF1Q8N6M8 205 aa9.8□□□□□ -0.84
UPF3B-204ENST00000619445 FAM216BQ8N7L0 139 aa9.8□□□□□ -0.84
UPF3B-204ENST00000619445 ZSCAN4Q8NAM6 433 aaPredicted RBP9.8□□□□□ -0.84
UPF3B-204ENST00000619445 CCDC197Q8NCU1 140 aa9.8□□□□□ -0.84
UPF3B-204ENST00000619445 LINC01006Q8NI28 216 aa9.8□□□□□ -0.84
UPF3B-204ENST00000619445 ASB17Q8WXJ9 295 aa9.8□□□□□ -0.84
UPF3B-204ENST00000619445 H1FXQ92522 213 aaKnown RBP9.8□□□□□ -0.84
UPF3B-204ENST00000619445 PIGCQ92535 297 aa9.8□□□□□ -0.84
UPF3B-204ENST00000619445 UBE2FQ969M7 185 aa9.8□□□□□ -0.84
UPF3B-204ENST00000619445 CCDC124Q96CT7 223 aaKnown RBP9.8□□□□□ -0.84
UPF3B-204ENST00000619445 MROQ9BYG7 248 aa9.8□□□□□ -0.84
UPF3B-204ENST00000619445 FAM234AQ9H0X4 552 aa9.8□□□□□ -0.84
UPF3B-204ENST00000619445 C16orf95Q9H693 158 aa9.8□□□□□ -0.84
UPF3B-204ENST00000619445 RASL12Q9NYN1 266 aa9.8□□□□□ -0.84
UPF3B-204ENST00000619445 PDP1Q9P0J1 537 aaPredicted RBP9.8□□□□□ -0.84
UPF3B-204ENST00000619445 NLKQ9UBE8 527 aa9.8□□□□□ -0.84
UPF3B-204ENST00000619445 hCG_1809904A0A1W2PP81 198 aa9.79□□□□□ -0.84
UPF3B-204ENST00000619445 A0A1W2PPE2 198 aa9.79□□□□□ -0.84
UPF3B-204ENST00000619445 A0A1W2PQ09 198 aa9.79□□□□□ -0.84
UPF3B-204ENST00000619445 A0A1W2PR64 198 aa9.79□□□□□ -0.84
UPF3B-204ENST00000619445 A0A1W2PRV1 198 aa9.79□□□□□ -0.84
UPF3B-204ENST00000619445 OR2AT4A6NND4 320 aa9.79□□□□□ -0.84
UPF3B-204ENST00000619445 NPFFO15130 113 aa9.79□□□□□ -0.84
UPF3B-204ENST00000619445 KCNAB3O43448 404 aa9.79□□□□□ -0.84
UPF3B-204ENST00000619445 MTRF1O75570 445 aaKnown RBP9.79□□□□□ -0.84
UPF3B-204ENST00000619445 ACAA1P09110 424 aaPredicted RBP9.79□□□□□ -0.84
UPF3B-204ENST00000619445 ALOX5APP20292 161 aa9.79□□□□□ -0.84
UPF3B-204ENST00000619445 GLRA1P23415 457 aa9.79□□□□□ -0.84
UPF3B-204ENST00000619445 ACKR3P25106 362 aa9.79□□□□□ -0.84
UPF3B-204ENST00000619445 ACTR3P61158 418 aa9.79□□□□□ -0.84
UPF3B-204ENST00000619445 CDK5Q00535 292 aa9.79□□□□□ -0.84
UPF3B-204ENST00000619445 RIPPLY1Q0D2K3 151 aa9.79□□□□□ -0.84
UPF3B-204ENST00000619445 TAF9Q16594 264 aa9.79□□□□□ -0.84
UPF3B-204ENST00000619445 ZNF829Q3KNS6 432 aaPredicted RBP9.79□□□□□ -0.84
UPF3B-204ENST00000619445 CEACAM21Q3KPI0 293 aa9.79□□□□□ -0.84
UPF3B-204ENST00000619445 C11orf88Q6PI97 169 aa9.79□□□□□ -0.84
UPF3B-204ENST00000619445 THAP5Q7Z6K1 395 aa9.79□□□□□ -0.84
UPF3B-204ENST00000619445 CPOQ8IVL8 374 aa9.79□□□□□ -0.84
UPF3B-204ENST00000619445 ADGRG5Q8IZF4 528 aa9.79□□□□□ -0.84
UPF3B-204ENST00000619445 OR5A2Q8NGI9 324 aa9.79□□□□□ -0.84
UPF3B-204ENST00000619445 ANGPTL6Q8NI99 470 aa9.79□□□□□ -0.84
UPF3B-204ENST00000619445 AMELYQ99218 206 aa9.79□□□□□ -0.84
UPF3B-204ENST00000619445 TCF7L1Q9HCS4 588 aa9.79□□□□□ -0.84
UPF3B-204ENST00000619445 RAB18Q9NP72 206 aa9.79□□□□□ -0.84
UPF3B-204ENST00000619445 ZNF319Q9P2F9 582 aa9.79□□□□□ -0.84
UPF3B-204ENST00000619445 SF3B6Q9Y3B4 125 aaKnown RBP9.79□□□□□ -0.84
UPF3B-204ENST00000619445 TMEM269A0A1B0GVZ9 245 aa9.78□□□□□ -0.84
UPF3B-204ENST00000619445 GSC2O15499 205 aa9.78□□□□□ -0.84
UPF3B-204ENST00000619445 SELENOFO60613 162 aa9.78□□□□□ -0.84
UPF3B-204ENST00000619445 FCN3O75636 299 aa9.78□□□□□ -0.84
UPF3B-204ENST00000619445 TSPAN9O75954 239 aa9.78□□□□□ -0.84
UPF3B-204ENST00000619445 NDUFB7P17568 137 aa9.78□□□□□ -0.84
UPF3B-204ENST00000619445 PROK1P58294 105 aa9.78□□□□□ -0.84
UPF3B-204ENST00000619445 AANATQ16613 207 aa9.78□□□□□ -0.84
UPF3B-204ENST00000619445 SMIM21Q3B7S5 101 aa9.78□□□□□ -0.84
UPF3B-204ENST00000619445 MIDNQ504T8 468 aa9.78□□□□□ -0.84
UPF3B-204ENST00000619445 OR8B12Q8NGG6 310 aa9.78□□□□□ -0.84
UPF3B-204ENST00000619445 RPL3LQ92901 407 aaKnown RBP9.78□□□□□ -0.84
UPF3B-204ENST00000619445 NRBF2Q96F24 287 aa9.78□□□□□ -0.84
UPF3B-204ENST00000619445 MNTQ99583 582 aa9.78□□□□□ -0.84
UPF3B-204ENST00000619445 MOB1AQ9H8S9 216 aa9.78□□□□□ -0.84
UPF3B-204ENST00000619445 SLC25A19Q9HC21 320 aa9.78□□□□□ -0.84
UPF3B-204ENST00000619445 SIRT7Q9NRC8 400 aa9.78□□□□□ -0.84
UPF3B-204ENST00000619445 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP9.78□□□□□ -0.84
UPF3B-204ENST00000619445 LRP12Q9Y561 859 aa9.78□□□□□ -0.84
UPF3B-204ENST00000619445 MEIOCA2RUB1 952 aa9.77□□□□□ -0.84
UPF3B-204ENST00000619445 ANKRD61A6NGH8 418 aa9.77□□□□□ -0.84
UPF3B-204ENST00000619445 RNASEK-C17orf49H0YIS7 233 aa9.77□□□□□ -0.84
UPF3B-204ENST00000619445 AKR7A2O43488 359 aa9.77□□□□□ -0.84
UPF3B-204ENST00000619445 SAA4P35542 130 aa9.77□□□□□ -0.84
UPF3B-204ENST00000619445 GPM6AP51674 278 aa9.77□□□□□ -0.84
UPF3B-204ENST00000619445 RIDAP52758 137 aaKnown RBP9.77□□□□□ -0.84
UPF3B-204ENST00000619445 GYS2P54840 703 aa9.77□□□□□ -0.84
UPF3B-204ENST00000619445 ROM1Q03395 351 aa9.77□□□□□ -0.84
UPF3B-204ENST00000619445 SNAPC1Q16533 368 aa9.77□□□□□ -0.84
UPF3B-204ENST00000619445 C2orf68Q2NKX9 166 aa9.77□□□□□ -0.84
UPF3B-204ENST00000619445 DNAL1Q4LDG9 190 aa9.77□□□□□ -0.84
UPF3B-204ENST00000619445 COMMD2Q86X83 199 aa9.77□□□□□ -0.84
UPF3B-204ENST00000619445 PDZD9Q8IXQ8 264 aa9.77□□□□□ -0.84
UPF3B-204ENST00000619445 ZNF679Q8IYX0 411 aa9.77□□□□□ -0.84
UPF3B-204ENST00000619445 Q8N7P7 452 aa9.77□□□□□ -0.84
UPF3B-204ENST00000619445 BEND2Q8NDZ0 799 aa9.77□□□□□ -0.84
UPF3B-204ENST00000619445 OR5T2Q8NGG2 359 aa9.77□□□□□ -0.84
UPF3B-204ENST00000619445 CANT1Q8WVQ1 401 aa9.77□□□□□ -0.84
UPF3B-204ENST00000619445 HPSE2Q8WWQ2 592 aa9.77□□□□□ -0.84
UPF3B-204ENST00000619445 TAF15Q92804 592 aaKnown RBP eCLIP9.77□□□□□ -0.84
UPF3B-204ENST00000619445 GAFA1Q96PS6 74 aa9.77□□□□□ -0.84
UPF3B-204ENST00000619445 RBM4BQ9BQ04 359 aaKnown RBP9.77□□□□□ -0.84
UPF3B-204ENST00000619445 THTPAQ9BU02 230 aa9.77□□□□□ -0.84
UPF3B-204ENST00000619445 WDR13Q9H1Z4 485 aa9.77□□□□□ -0.84
UPF3B-204ENST00000619445 OR51I2Q9H344 312 aa9.77□□□□□ -0.84
UPF3B-204ENST00000619445 SNTG1Q9NSN8 517 aa9.77□□□□□ -0.84
UPF3B-204ENST00000619445 TAS2R1Q9NYW7 299 aa9.77□□□□□ -0.84
UPF3B-204ENST00000619445 DNAJB9Q9UBS3 223 aa9.77□□□□□ -0.84
UPF3B-204ENST00000619445 ENPP5Q9UJA9 477 aa9.77□□□□□ -0.84
UPF3B-204ENST00000619445 POLDIP2Q9Y2S7 368 aa9.77□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms