RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 F5H0A9 414 aaPredicted RBP16.21■□□□□ 0.19
UPF1-212ENST00000601689 H0YAE9 185 aa16.21■□□□□ 0.19
UPF1-212ENST00000601689 CASQ2O14958 399 aaPredicted RBP16.21■□□□□ 0.19
UPF1-212ENST00000601689 GATBO75879 557 aaKnown RBP16.21■□□□□ 0.19
UPF1-212ENST00000601689 CFHR2P36980 270 aa16.21■□□□□ 0.19
UPF1-212ENST00000601689 PITPNBP48739 271 aa16.21■□□□□ 0.19
UPF1-212ENST00000601689 GPM6AP51674 278 aa16.21■□□□□ 0.19
UPF1-212ENST00000601689 ELF3P78545 371 aaPredicted RBP16.21■□□□□ 0.19
UPF1-212ENST00000601689 SLC34A1Q06495 639 aa16.21■□□□□ 0.19
UPF1-212ENST00000601689 FAM201AQ5SY85 155 aa16.21■□□□□ 0.19
UPF1-212ENST00000601689 OGFRL1Q5TC84 451 aaPredicted RBP16.21■□□□□ 0.19
UPF1-212ENST00000601689 CD276Q5ZPR3 534 aa16.21■□□□□ 0.19
UPF1-212ENST00000601689 ZNF826PQ6ZT77 177 aa16.21■□□□□ 0.19
UPF1-212ENST00000601689 IL17RELQ6ZVW7 336 aa16.21■□□□□ 0.19
UPF1-212ENST00000601689 VCX3BQ9H321 246 aa16.21■□□□□ 0.19
UPF1-212ENST00000601689 C7orf69Q9H7B7 122 aa16.21■□□□□ 0.19
UPF1-212ENST00000601689 AMBNQ9NP70 447 aa16.21■□□□□ 0.19
UPF1-212ENST00000601689 ACOXLQ9NUZ1 547 aa16.21■□□□□ 0.19
UPF1-212ENST00000601689 AASSQ9UDR5 926 aa16.21■□□□□ 0.19
UPF1-212ENST00000601689 METRNQ9UJH8 293 aa16.21■□□□□ 0.19
UPF1-212ENST00000601689 A8MXK9 166 aa16.2■□□□□ 0.18
UPF1-212ENST00000601689 J3QRE1 110 aa16.2■□□□□ 0.18
UPF1-212ENST00000601689 CD80P33681 288 aa16.2■□□□□ 0.18
UPF1-212ENST00000601689 THBS2P35442 1172 aa16.2■□□□□ 0.18
UPF1-212ENST00000601689 FAM76BQ5HYJ3 339 aa16.2■□□□□ 0.18
UPF1-212ENST00000601689 WDR82Q6UXN9 313 aa16.2■□□□□ 0.18
UPF1-212ENST00000601689 SLC36A1Q7Z2H8 476 aa16.2■□□□□ 0.18
UPF1-212ENST00000601689 LHFPL3Q86UP9 236 aa16.2■□□□□ 0.18
UPF1-212ENST00000601689 ZNF573Q86YE8 665 aa16.2■□□□□ 0.18
UPF1-212ENST00000601689 C8orf59Q8N0T1 100 aaPredicted RBP16.2■□□□□ 0.18
UPF1-212ENST00000601689 SYS1Q8N2H4 156 aa16.2■□□□□ 0.18
UPF1-212ENST00000601689 GCSAMQ8N6F7 178 aa16.2■□□□□ 0.18
UPF1-212ENST00000601689 OR14K1Q8NGZ2 314 aa16.2■□□□□ 0.18
UPF1-212ENST00000601689 NANPQ8TBE9 248 aa16.2■□□□□ 0.18
UPF1-212ENST00000601689 C12orf43Q96C57 262 aaKnown RBP16.2■□□□□ 0.18
UPF1-212ENST00000601689 C4orf36Q96KX1 117 aa16.2■□□□□ 0.18
UPF1-212ENST00000601689 TLNRD1Q9H1K6 362 aa16.2■□□□□ 0.18
UPF1-212ENST00000601689 NEK6Q9HC98 313 aa16.2■□□□□ 0.18
UPF1-212ENST00000601689 MRPS18AQ9NVS2 196 aaKnown RBP16.2■□□□□ 0.18
UPF1-212ENST00000601689 POLR3KQ9Y2Y1 108 aaPredicted RBP16.2■□□□□ 0.18
UPF1-212ENST00000601689 ADAM20O43506 726 aa16.19■□□□□ 0.18
UPF1-212ENST00000601689 LHBP01229 141 aa16.19■□□□□ 0.18
UPF1-212ENST00000601689 OCM2P0CE71 109 aa16.19■□□□□ 0.18
UPF1-212ENST00000601689 OCMP0CE72 109 aaPredicted RBP16.19■□□□□ 0.18
UPF1-212ENST00000601689 MYL12AP19105 171 aa16.19■□□□□ 0.18
UPF1-212ENST00000601689 CCL1P22362 96 aa16.19■□□□□ 0.18
UPF1-212ENST00000601689 DCKP27707 260 aa16.19■□□□□ 0.18
UPF1-212ENST00000601689 CAPGP40121 348 aa16.19■□□□□ 0.18
UPF1-212ENST00000601689 PSMB10P40306 273 aa16.19■□□□□ 0.18
UPF1-212ENST00000601689 GBX2P52951 348 aaPredicted RBP16.19■□□□□ 0.18
UPF1-212ENST00000601689 OR12D2P58182 307 aa16.19■□□□□ 0.18
UPF1-212ENST00000601689 CSNK2BP67870 215 aa16.19■□□□□ 0.18
UPF1-212ENST00000601689 WDR38Q5JTN6 314 aa16.19■□□□□ 0.18
UPF1-212ENST00000601689 TEX36Q5VZQ5 186 aa16.19■□□□□ 0.18
UPF1-212ENST00000601689 TMPRSS11AQ6ZMR5 421 aa16.19■□□□□ 0.18
UPF1-212ENST00000601689 SCCPDHQ8NBX0 429 aa16.19■□□□□ 0.18
UPF1-212ENST00000601689 C19orf18Q8NEA5 215 aa16.19■□□□□ 0.18
UPF1-212ENST00000601689 OR2G2Q8NGZ5 317 aa16.19■□□□□ 0.18
UPF1-212ENST00000601689 RPL3LQ92901 407 aaKnown RBP16.19■□□□□ 0.18
UPF1-212ENST00000601689 COMMD4Q9H0A8 199 aa16.19■□□□□ 0.18
UPF1-212ENST00000601689 POLDIP2Q9Y2S7 368 aa16.19■□□□□ 0.18
UPF1-212ENST00000601689 ANKRD61A6NGH8 418 aa16.18■□□□□ 0.18
UPF1-212ENST00000601689 PHF1O43189 567 aaPredicted RBP16.18■□□□□ 0.18
UPF1-212ENST00000601689 GYPAP02724 150 aa16.18■□□□□ 0.18
UPF1-212ENST00000601689 CCDC159P0C7I6 412 aa16.18■□□□□ 0.18
UPF1-212ENST00000601689 GLRA1P23415 457 aa16.18■□□□□ 0.18
UPF1-212ENST00000601689 CCR9P51686 369 aa16.18■□□□□ 0.18
UPF1-212ENST00000601689 ISL1P61371 349 aa16.18■□□□□ 0.18
UPF1-212ENST00000601689 HNRNPA0Q13151 305 aaKnown RBP16.18■□□□□ 0.18
UPF1-212ENST00000601689 FDX2Q6P4F2 183 aa16.18■□□□□ 0.18
UPF1-212ENST00000601689 WDR86Q86TI4 376 aa16.18■□□□□ 0.18
UPF1-212ENST00000601689 C11orf53Q8IXP5 236 aa16.18■□□□□ 0.18
UPF1-212ENST00000601689 ZNF676Q8N7Q3 588 aa16.18■□□□□ 0.18
UPF1-212ENST00000601689 OR52I1Q8NGK6 324 aa16.18■□□□□ 0.18
UPF1-212ENST00000601689 HPSE2Q8WWQ2 592 aa16.18■□□□□ 0.18
UPF1-212ENST00000601689 PP6455Q8WZ26 134 aa16.18■□□□□ 0.18
UPF1-212ENST00000601689 METTL17Q9H7H0 456 aaPredicted RBP16.18■□□□□ 0.18
UPF1-212ENST00000601689 ERVK13-1Q9NX77 482 aa16.18■□□□□ 0.18
UPF1-212ENST00000601689 ARHGAP32A7KAX9 2087 aa16.18■□□□□ 0.18
UPF1-212ENST00000601689 A0A1B0GTI1 187 aa16.17■□□□□ 0.18
UPF1-212ENST00000601689 NKX6-3A6NJ46 265 aa16.17■□□□□ 0.18
UPF1-212ENST00000601689 SRRM5B3KS81 715 aa16.17■□□□□ 0.18
UPF1-212ENST00000601689 TMPRSS2O15393 492 aa16.17■□□□□ 0.18
UPF1-212ENST00000601689 IGHA1P01876 353 aa16.17■□□□□ 0.18
UPF1-212ENST00000601689 ISG15P05161 165 aa16.17■□□□□ 0.18
UPF1-212ENST00000601689 ZNF20P17024 532 aa16.17■□□□□ 0.18
UPF1-212ENST00000601689 ZFP36P26651 326 aaKnown RBP16.17■□□□□ 0.18
UPF1-212ENST00000601689 RBMXP38159 391 aaKnown RBP16.17■□□□□ 0.18
UPF1-212ENST00000601689 ALKBH1Q13686 389 aaKnown RBP16.17■□□□□ 0.18
UPF1-212ENST00000601689 CNN3Q15417 329 aaKnown RBP16.17■□□□□ 0.18
UPF1-212ENST00000601689 C11orf91Q3C1V1 193 aa16.17■□□□□ 0.18
UPF1-212ENST00000601689 Q6ZSR3 168 aa16.17■□□□□ 0.18
UPF1-212ENST00000601689 APH1BQ8WW43 257 aa16.17■□□□□ 0.18
UPF1-212ENST00000601689 RAB40AQ8WXH6 277 aa16.17■□□□□ 0.18
UPF1-212ENST00000601689 TMIGD2Q96BF3 282 aa16.17■□□□□ 0.18
UPF1-212ENST00000601689 OR51I2Q9H344 312 aa16.17■□□□□ 0.18
UPF1-212ENST00000601689 PPP1R3EQ9H7J1 279 aa16.17■□□□□ 0.18
UPF1-212ENST00000601689 FGF20Q9NP95 211 aaPredicted RBP16.17■□□□□ 0.18
UPF1-212ENST00000601689 GPR173Q9NS66 373 aa16.17■□□□□ 0.18
UPF1-212ENST00000601689 HHLA2Q9UM44 414 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms