RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 LRRK1Q38SD2 2015 aa3.43□□□□□ -1.86
NUP88-213ENST00000576862 ZSWIM8A7E2V4 1837 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 THSD7BQ9C0I4 1608 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 A0A1W2PRF3 423 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 A0A1W2PRM7 423 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 MYBPHLA2RUH7 354 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 PINLYPA6NC86 204 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 SIRPB1O00241 398 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 ACOX3O15254 700 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 TAPBPO15533 448 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 FADS1O60427 444 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 B3GAT3O94766 335 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 GAPDHP04406 335 aaKnown RBP3.42□□□□□ -1.86
NUP88-213ENST00000576862 ZDHHC11BP0C7U3 371 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 BCKDHAP12694 445 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 CCL5P13501 91 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 IGLL1P15814 213 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 PGCP20142 388 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 KITLGP21583 273 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 ME2P23368 584 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 KDELR1P24390 212 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 IVDP26440 423 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 HTR2CP28335 458 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 OR1E1P30953 314 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 TGFBR2P37173 567 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 HSPA9P38646 679 aaKnown RBP3.42□□□□□ -1.86
NUP88-213ENST00000576862 RPL13AP40429 203 aaKnown RBP3.42□□□□□ -1.86
NUP88-213ENST00000576862 RPL29P47914 159 aaKnown RBP3.42□□□□□ -1.86
NUP88-213ENST00000576862 ZNF45Q02386 682 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 ADIGQ0VDE8 80 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 C1orf61Q13536 156 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 TRIP13Q15645 432 aaPredicted RBP3.42□□□□□ -1.86
NUP88-213ENST00000576862 ZNHIT3Q15649 155 aaPredicted RBP3.42□□□□□ -1.86
NUP88-213ENST00000576862 GGTA1PQ4G0N0 100 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 SAMD4BQ5PRF9 694 aaKnown RBP3.42□□□□□ -1.86
NUP88-213ENST00000576862 HES5Q5TA89 166 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 SDHAF4Q5VUM1 108 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 SYPL2Q5VXT5 272 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 LPCAT4Q643R3 524 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 ADNP2Q6IQ32 1131 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 REEP3Q6NUK4 255 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 CLEC20AQ6ZU45 233 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 ABHD13Q7L211 337 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 PPP1R27Q86WC6 154 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 TMEM17Q86X19 198 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 FUNDC1Q8IVP5 155 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 BOD1L2Q8IYS8 172 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 HS3ST5Q8IZT8 346 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 CYP4Z2PQ8N1L4 340 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 TMEM86AQ8N2M4 240 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 MREGQ8N565 214 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 SDR9C7Q8NEX9 313 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 OR2T33Q8NG76 320 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 OR6X1Q8NH79 312 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 FAM172AQ8WUF8 416 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 C22orf15Q8WYQ4 148 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 NDRG1Q92597 394 aaKnown RBP3.42□□□□□ -1.86
NUP88-213ENST00000576862 HGDQ93099 445 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 NEIL2Q969S2 332 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 UPRTQ96BW1 309 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 HAUS1Q96CS2 278 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 HSFY1Q96LI6 401 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 MBOAT4Q96T53 435 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 ECSITQ9BQ95 431 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 OR51J1Q9H342 316 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 PTGES2Q9H7Z7 377 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 PLGRKTQ9HBL7 147 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 PRSS16Q9NQE7 514 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 PLEKHJ1Q9NW61 149 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 NUP50Q9UKX7 468 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 UTP11Q9Y3A2 253 aaKnown RBP3.42□□□□□ -1.86
NUP88-213ENST00000576862 MMACHCQ9Y4U1 282 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 POLR3HQ9Y535 204 aaPredicted RBP3.42□□□□□ -1.86
NUP88-213ENST00000576862 MRPS18BQ9Y676 258 aaKnown RBP3.42□□□□□ -1.86
NUP88-213ENST00000576862 MCM3APO60318 1980 aa3.42□□□□□ -1.86
NUP88-213ENST00000576862 OBSCNQ5VST9 7968 aa3.41□□□□□ -1.86
NUP88-213ENST00000576862 SLC5A10A0PJK1 596 aa3.41□□□□□ -1.86
NUP88-213ENST00000576862 ZNF729A6NN14 1252 aaPredicted RBP3.41□□□□□ -1.86
NUP88-213ENST00000576862 RAMP3O60896 148 aa3.41□□□□□ -1.86
NUP88-213ENST00000576862 ADAP1O75689 374 aa3.41□□□□□ -1.86
NUP88-213ENST00000576862 PSMG1O95456 288 aa3.41□□□□□ -1.86
NUP88-213ENST00000576862 KLK1P06870 262 aa3.41□□□□□ -1.86
NUP88-213ENST00000576862 HOXC4P09017 264 aaPredicted RBP3.41□□□□□ -1.86
NUP88-213ENST00000576862 H2BFMP0C1H6 154 aa3.41□□□□□ -1.86
NUP88-213ENST00000576862 OR4Q2P0C623 313 aa3.41□□□□□ -1.86
NUP88-213ENST00000576862 THRAP10827 490 aa3.41□□□□□ -1.86
NUP88-213ENST00000576862 NR2C1P13056 603 aa3.41□□□□□ -1.86
NUP88-213ENST00000576862 NQO1P15559 274 aaKnown RBP3.41□□□□□ -1.86
NUP88-213ENST00000576862 NPR2P20594 1047 aa3.41□□□□□ -1.86
NUP88-213ENST00000576862 VDAC1P21796 283 aa3.41□□□□□ -1.86
NUP88-213ENST00000576862 DCKP27707 260 aa3.41□□□□□ -1.86
NUP88-213ENST00000576862 SDC4P31431 198 aa3.41□□□□□ -1.86
NUP88-213ENST00000576862 RBMXP38159 391 aaKnown RBP3.41□□□□□ -1.86
NUP88-213ENST00000576862 DNASE1L1P49184 302 aa3.41□□□□□ -1.86
NUP88-213ENST00000576862 CX3CR1P49238 355 aa3.41□□□□□ -1.86
NUP88-213ENST00000576862 CAV2P51636 162 aa3.41□□□□□ -1.86
NUP88-213ENST00000576862 DYNLT1P63172 113 aa3.41□□□□□ -1.86
NUP88-213ENST00000576862 EIF4EBP2Q13542 120 aaPredicted RBP3.41□□□□□ -1.86
NUP88-213ENST00000576862 LRRC36Q1X8D7 754 aa3.41□□□□□ -1.86
NUP88-213ENST00000576862 TFDP3Q5H9I0 405 aa3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms