RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 CSMD3Q7Z407 3707 aa4.51□□□□□ -1.69
VPS53-219ENST00000576019 IGLV4-3A0A075B6K6 122 aa4.5□□□□□ -1.69
VPS53-219ENST00000576019 H7C0C1 242 aa4.5□□□□□ -1.69
VPS53-219ENST00000576019 K7EMT4 169 aa4.5□□□□□ -1.69
VPS53-219ENST00000576019 TNFSF11O14788 317 aa4.5□□□□□ -1.69
VPS53-219ENST00000576019 CD5LO43866 347 aa4.5□□□□□ -1.69
VPS53-219ENST00000576019 LMX1BO60663 402 aa4.5□□□□□ -1.69
VPS53-219ENST00000576019 FKBP6O75344 327 aa4.5□□□□□ -1.69
VPS53-219ENST00000576019 SLPIP03973 132 aa4.5□□□□□ -1.69
VPS53-219ENST00000576019 RHOCP08134 193 aa4.5□□□□□ -1.69
VPS53-219ENST00000576019 LAMP1P11279 417 aa4.5□□□□□ -1.69
VPS53-219ENST00000576019 IGHV1-2P23083 117 aa4.5□□□□□ -1.69
VPS53-219ENST00000576019 TIMP3P35625 211 aa4.5□□□□□ -1.69
VPS53-219ENST00000576019 MAGEA6P43360 314 aa4.5□□□□□ -1.69
VPS53-219ENST00000576019 RAB7AP51149 207 aa4.5□□□□□ -1.69
VPS53-219ENST00000576019 PLK1P53350 603 aa4.5□□□□□ -1.69
VPS53-219ENST00000576019 SLC25A11Q02978 314 aaKnown RBP4.5□□□□□ -1.69
VPS53-219ENST00000576019 CALCOCO2Q13137 446 aa4.5□□□□□ -1.69
VPS53-219ENST00000576019 CYLC2Q14093 348 aaPredicted RBP4.5□□□□□ -1.69
VPS53-219ENST00000576019 CST6Q15828 149 aa4.5□□□□□ -1.69
VPS53-219ENST00000576019 C5orf64Q2M2E5 130 aa4.5□□□□□ -1.69
VPS53-219ENST00000576019 CDKL4Q5MAI5 379 aa4.5□□□□□ -1.69
VPS53-219ENST00000576019 TIGD3Q6B0B8 471 aa4.5□□□□□ -1.69
VPS53-219ENST00000576019 TFAP2EQ6VUC0 442 aa4.5□□□□□ -1.69
VPS53-219ENST00000576019 TPGS1Q6ZTW0 290 aa4.5□□□□□ -1.69
VPS53-219ENST00000576019 ZNF571Q7Z3V5 609 aaPredicted RBP4.5□□□□□ -1.69
VPS53-219ENST00000576019 ABHD12Q8N2K0 398 aa4.5□□□□□ -1.69
VPS53-219ENST00000576019 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.5□□□□□ -1.69
VPS53-219ENST00000576019 RASL10AQ92737 203 aa4.5□□□□□ -1.69
VPS53-219ENST00000576019 CCDC127Q96BQ5 260 aa4.5□□□□□ -1.69
VPS53-219ENST00000576019 COL21A1Q96P44 957 aa4.5□□□□□ -1.69
VPS53-219ENST00000576019 SRRQ9GZT4 340 aa4.5□□□□□ -1.69
VPS53-219ENST00000576019 RDH14Q9HBH5 336 aa4.5□□□□□ -1.69
VPS53-219ENST00000576019 MIEF1Q9NQG6 463 aa4.5□□□□□ -1.69
VPS53-219ENST00000576019 RMND1Q9NWS8 449 aa4.5□□□□□ -1.69
VPS53-219ENST00000576019 OR1A1Q9P1Q5 309 aa4.5□□□□□ -1.69
VPS53-219ENST00000576019 HMGXB4Q9UGU5 601 aa4.5□□□□□ -1.69
VPS53-219ENST00000576019 STAB2Q8WWQ8 2551 aa4.5□□□□□ -1.69
VPS53-219ENST00000576019 IGHV3-16A0A0C4DH30 117 aa4.49□□□□□ -1.69
VPS53-219ENST00000576019 A0A0G2JRQ6 117 aa4.49□□□□□ -1.69
VPS53-219ENST00000576019 SPTY2D1-AS1A0A0U1RR47 76 aa4.49□□□□□ -1.69
VPS53-219ENST00000576019 LYRM9A8MSI8 78 aa4.49□□□□□ -1.69
VPS53-219ENST00000576019 SAP18O00422 153 aaKnown RBP4.49□□□□□ -1.69
VPS53-219ENST00000576019 ENSAO43768 121 aaKnown RBP4.49□□□□□ -1.69
VPS53-219ENST00000576019 MGRN1O60291 552 aa4.49□□□□□ -1.69
VPS53-219ENST00000576019 ZMPSTE24O75844 475 aa4.49□□□□□ -1.69
VPS53-219ENST00000576019 FOLR1P15328 257 aa4.49□□□□□ -1.69
VPS53-219ENST00000576019 CSNK2A2P19784 350 aaPredicted RBP4.49□□□□□ -1.69
VPS53-219ENST00000576019 TBPP20226 339 aa4.49□□□□□ -1.69
VPS53-219ENST00000576019 LMO2P25791 158 aa4.49□□□□□ -1.69
VPS53-219ENST00000576019 RBM34P42696 430 aaKnown RBP4.49□□□□□ -1.69
VPS53-219ENST00000576019 KLK7P49862 253 aa4.49□□□□□ -1.69
VPS53-219ENST00000576019 RORCP51449 518 aa4.49□□□□□ -1.69
VPS53-219ENST00000576019 STX17P56962 302 aa4.49□□□□□ -1.69
VPS53-219ENST00000576019 HILS1P60008 231 aa4.49□□□□□ -1.69
VPS53-219ENST00000576019 GNB1P62873 340 aa4.49□□□□□ -1.69
VPS53-219ENST00000576019 PAFAH1B2P68402 229 aa4.49□□□□□ -1.69
VPS53-219ENST00000576019 SLC35B1P78383 322 aa4.49□□□□□ -1.69
VPS53-219ENST00000576019 C2orf80Q0P641 193 aa4.49□□□□□ -1.69
VPS53-219ENST00000576019 MAD2L1BPQ15013 274 aaPredicted RBP4.49□□□□□ -1.69
VPS53-219ENST00000576019 LTB4RQ15722 352 aa4.49□□□□□ -1.69
VPS53-219ENST00000576019 ZNF600Q6ZNG1 722 aa4.49□□□□□ -1.69
VPS53-219ENST00000576019 SLC7A5P1Q8MH63 180 aa4.49□□□□□ -1.69
VPS53-219ENST00000576019 RNF10Q8N5U6 811 aaKnown RBP4.49□□□□□ -1.69
VPS53-219ENST00000576019 DUSP18Q8NEJ0 188 aa4.49□□□□□ -1.69
VPS53-219ENST00000576019 OR2A12Q8NGT7 310 aa4.49□□□□□ -1.69
VPS53-219ENST00000576019 OR2L8Q8NGY9 312 aa4.49□□□□□ -1.69
VPS53-219ENST00000576019 TMEM190Q8WZ59 177 aa4.49□□□□□ -1.69
VPS53-219ENST00000576019 LRRC45Q96CN5 670 aa4.49□□□□□ -1.69
VPS53-219ENST00000576019 ZNF597Q96LX8 424 aa4.49□□□□□ -1.69
VPS53-219ENST00000576019 LRRC61Q9BV99 259 aa4.49□□□□□ -1.69
VPS53-219ENST00000576019 SRXN1Q9BYN0 137 aa4.49□□□□□ -1.69
VPS53-219ENST00000576019 ELOVL4Q9GZR5 314 aa4.49□□□□□ -1.69
VPS53-219ENST00000576019 DRC3Q9H069 523 aa4.49□□□□□ -1.69
VPS53-219ENST00000576019 TUBB1Q9H4B7 451 aa4.49□□□□□ -1.69
VPS53-219ENST00000576019 CACNG5Q9UF02 275 aa4.49□□□□□ -1.69
VPS53-219ENST00000576019 V9GY05 133 aa4.49□□□□□ -1.69
VPS53-219ENST00000576019 FRAS1Q86XX4 4008 aa4.49□□□□□ -1.69
VPS53-219ENST00000576019 DOCK7Q96N67 2140 aa4.49□□□□□ -1.69
VPS53-219ENST00000576019 A0A1B0GUV1 79 aa4.48□□□□□ -1.69
VPS53-219ENST00000576019 A6NIZ1 184 aa4.48□□□□□ -1.69
VPS53-219ENST00000576019 M0QXV9 152 aa4.48□□□□□ -1.69
VPS53-219ENST00000576019 ICOSLGO75144 302 aa4.48□□□□□ -1.69
VPS53-219ENST00000576019 ADAP1O75689 374 aa4.48□□□□□ -1.69
VPS53-219ENST00000576019 EIF3GO75821 320 aaKnown RBP eCLIP4.48□□□□□ -1.69
VPS53-219ENST00000576019 MYO1DO94832 1006 aa4.48□□□□□ -1.69
VPS53-219ENST00000576019 TBX6O95947 436 aaPredicted RBP4.48□□□□□ -1.69
VPS53-219ENST00000576019 RENP00797 406 aa4.48□□□□□ -1.69
VPS53-219ENST00000576019 ARG1P05089 322 aa4.48□□□□□ -1.69
VPS53-219ENST00000576019 SLC35E2BP0CK96 405 aa4.48□□□□□ -1.69
VPS53-219ENST00000576019 THRAP10827 490 aa4.48□□□□□ -1.69
VPS53-219ENST00000576019 CXCR2P25025 360 aa4.48□□□□□ -1.69
VPS53-219ENST00000576019 KDELR2P33947 212 aa4.48□□□□□ -1.69
VPS53-219ENST00000576019 RANBP1P43487 201 aa4.48□□□□□ -1.69
VPS53-219ENST00000576019 CSNK1DP48730 415 aa4.48□□□□□ -1.69
VPS53-219ENST00000576019 SUB1P53999 127 aaKnown RBP eCLIP4.48□□□□□ -1.69
VPS53-219ENST00000576019 EMP2P54851 167 aa4.48□□□□□ -1.69
VPS53-219ENST00000576019 ERVFC1-1P60608 527 aa4.48□□□□□ -1.69
VPS53-219ENST00000576019 RAP1BP61224 184 aa4.48□□□□□ -1.69
VPS53-219ENST00000576019 RPL32P62910 135 aaKnown RBP4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms