RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 ORAI1Q96D31 301 aa17.52■□□□□ 0.4
CLN3-212ENST00000564574 BORCS8Q96FH0 119 aa17.52■□□□□ 0.4
CLN3-212ENST00000564574 CPNE2Q96FN4 548 aaPredicted RBP17.52■□□□□ 0.4
CLN3-212ENST00000564574 RNF170Q96K19 258 aa17.52■□□□□ 0.4
CLN3-212ENST00000564574 TPK1Q9H3S4 243 aa17.52■□□□□ 0.4
CLN3-212ENST00000564574 TMEM138Q9NPI0 162 aa17.52■□□□□ 0.4
CLN3-212ENST00000564574 CHD3Q12873 2000 aaKnown RBP17.52■□□□□ 0.39
CLN3-212ENST00000564574 TRAV8-7A0A075B6U6 113 aa17.51■□□□□ 0.39
CLN3-212ENST00000564574 TRAV1-2A0A0B4J238 106 aa17.51■□□□□ 0.39
CLN3-212ENST00000564574 IGKV1-9A0A0C4DH69 117 aa17.51■□□□□ 0.39
CLN3-212ENST00000564574 LOC100506127A0A0U1RQW1 187 aa17.51■□□□□ 0.39
CLN3-212ENST00000564574 MEGF11A6BM72 1044 aa17.51■□□□□ 0.39
CLN3-212ENST00000564574 MAGEB3O15480 346 aa17.51■□□□□ 0.39
CLN3-212ENST00000564574 PTBP3O95758 552 aaKnown RBP17.51■□□□□ 0.39
CLN3-212ENST00000564574 TNFRSF1AP19438 455 aa17.51■□□□□ 0.39
CLN3-212ENST00000564574 MYL9P24844 172 aa17.51■□□□□ 0.39
CLN3-212ENST00000564574 BDKRB2P30411 391 aa17.51■□□□□ 0.39
CLN3-212ENST00000564574 MAB21L1Q13394 359 aa17.51■□□□□ 0.39
CLN3-212ENST00000564574 GPR107Q5VW38 600 aa17.51■□□□□ 0.39
CLN3-212ENST00000564574 LHFPL2Q6ZUX7 228 aa17.51■□□□□ 0.39
CLN3-212ENST00000564574 MEGF10Q96KG7 1140 aa17.51■□□□□ 0.39
CLN3-212ENST00000564574 KCTD7Q96MP8 289 aa17.51■□□□□ 0.39
CLN3-212ENST00000564574 OR2V2Q96R30 315 aa17.51■□□□□ 0.39
CLN3-212ENST00000564574 PPIL3Q9H2H8 161 aaKnown RBP17.51■□□□□ 0.39
CLN3-212ENST00000564574 SNTG1Q9NSN8 517 aa17.51■□□□□ 0.39
CLN3-212ENST00000564574 DECR2Q9NUI1 292 aa17.51■□□□□ 0.39
CLN3-212ENST00000564574 UNC79Q9P2D8 2635 aa17.51■□□□□ 0.39
CLN3-212ENST00000564574 PQLC2LA1A4F0 135 aa17.5■□□□□ 0.39
CLN3-212ENST00000564574 ZNF732B4DXR9 585 aa17.5■□□□□ 0.39
CLN3-212ENST00000564574 GABARAPO95166 117 aa17.5■□□□□ 0.39
CLN3-212ENST00000564574 HCKP08631 526 aa17.5■□□□□ 0.39
CLN3-212ENST00000564574 CDKN1AP38936 164 aa17.5■□□□□ 0.39
CLN3-212ENST00000564574 GATA4P43694 442 aa17.5■□□□□ 0.39
CLN3-212ENST00000564574 RBP2P50120 134 aa17.5■□□□□ 0.39
CLN3-212ENST00000564574 ATP1B3P54709 279 aa17.5■□□□□ 0.39
CLN3-212ENST00000564574 FAM76BQ5HYJ3 339 aa17.5■□□□□ 0.39
CLN3-212ENST00000564574 CDH26Q8IXH8 852 aa17.5■□□□□ 0.39
CLN3-212ENST00000564574 ZCCHC24Q8N2G6 241 aaKnown RBP17.5■□□□□ 0.39
CLN3-212ENST00000564574 NKAIN3Q8N8D7 197 aa17.5■□□□□ 0.39
CLN3-212ENST00000564574 RPL3LQ92901 407 aaKnown RBP17.5■□□□□ 0.39
CLN3-212ENST00000564574 ERGIC1Q969X5 290 aa17.5■□□□□ 0.39
CLN3-212ENST00000564574 BCL7BQ9BQE9 202 aa17.5■□□□□ 0.39
CLN3-212ENST00000564574 LIME1Q9H400 295 aa17.5■□□□□ 0.39
CLN3-212ENST00000564574 SAP30LQ9HAJ7 183 aa17.5■□□□□ 0.39
CLN3-212ENST00000564574 CACNA1DQ01668 2161 aa17.5■□□□□ 0.39
CLN3-212ENST00000564574 TANC2Q9HCD6 1990 aa17.49■□□□□ 0.39
CLN3-212ENST00000564574 NOTCH2Q04721 2471 aa17.49■□□□□ 0.39
CLN3-212ENST00000564574 FAM230AA0A1W2PPH8 454 aa17.49■□□□□ 0.39
CLN3-212ENST00000564574 LRP5LA4QPB2 252 aa17.49■□□□□ 0.39
CLN3-212ENST00000564574 PDCD5O14737 125 aa17.49■□□□□ 0.39
CLN3-212ENST00000564574 TPD52L2O43399 206 aaKnown RBP17.49■□□□□ 0.39
CLN3-212ENST00000564574 THBS2P35442 1172 aa17.49■□□□□ 0.39
CLN3-212ENST00000564574 GPM6AP51674 278 aa17.49■□□□□ 0.39
CLN3-212ENST00000564574 SLC16A12Q6ZSM3 486 aa17.49■□□□□ 0.39
CLN3-212ENST00000564574 LRRTM1Q86UE6 522 aa17.49■□□□□ 0.39
CLN3-212ENST00000564574 ZNF573Q86YE8 665 aa17.49■□□□□ 0.39
CLN3-212ENST00000564574 CLVS1Q8IUQ0 354 aaPredicted RBP17.49■□□□□ 0.39
CLN3-212ENST00000564574 OR51A2Q8NGJ7 313 aa17.49■□□□□ 0.39
CLN3-212ENST00000564574 TRMT10AQ8TBZ6 339 aaKnown RBP17.49■□□□□ 0.39
CLN3-212ENST00000564574 NPRL2Q8WTW4 380 aa17.49■□□□□ 0.39
CLN3-212ENST00000564574 ITLN1Q8WWA0 313 aa17.49■□□□□ 0.39
CLN3-212ENST00000564574 SORCS2Q96PQ0 1159 aa17.49■□□□□ 0.39
CLN3-212ENST00000564574 CENPOQ9BU64 300 aa17.49■□□□□ 0.39
CLN3-212ENST00000564574 FGF23Q9GZV9 251 aaPredicted RBP17.49■□□□□ 0.39
CLN3-212ENST00000564574 LOC100289279A0A1B0GTE1 492 aa17.48■□□□□ 0.39
CLN3-212ENST00000564574 TRIM64BA6NI03 449 aa17.48■□□□□ 0.39
CLN3-212ENST00000564574 MAS1P04201 325 aa17.48■□□□□ 0.39
CLN3-212ENST00000564574 PAX1P15863 534 aa17.48■□□□□ 0.39
CLN3-212ENST00000564574 MTNR1BP49286 362 aa17.48■□□□□ 0.39
CLN3-212ENST00000564574 TMBIM6P55061 237 aa17.48■□□□□ 0.39
CLN3-212ENST00000564574 CCL8P80075 99 aa17.48■□□□□ 0.39
CLN3-212ENST00000564574 DDI2Q5TDH0 399 aa17.48■□□□□ 0.39
CLN3-212ENST00000564574 TPRA1Q86W33 373 aa17.48■□□□□ 0.39
CLN3-212ENST00000564574 RAB2BQ8WUD1 216 aa17.48■□□□□ 0.39
CLN3-212ENST00000564574 NRGNQ92686 78 aa17.48■□□□□ 0.39
CLN3-212ENST00000564574 TLNRD1Q9H1K6 362 aa17.48■□□□□ 0.39
CLN3-212ENST00000564574 ZNF701Q9NV72 531 aaPredicted RBP17.48■□□□□ 0.39
CLN3-212ENST00000564574 NOL3O60936 208 aaKnown RBP17.47■□□□□ 0.39
CLN3-212ENST00000564574 NCR1O76036 304 aa17.47■□□□□ 0.39
CLN3-212ENST00000564574 DNASE1P24855 282 aa17.47■□□□□ 0.39
CLN3-212ENST00000564574 PSMD7P51665 324 aa17.47■□□□□ 0.39
CLN3-212ENST00000564574 MTCP1P56278 107 aa17.47■□□□□ 0.39
CLN3-212ENST00000564574 ZNF154Q13106 437 aa17.47■□□□□ 0.39
CLN3-212ENST00000564574 DMRTC1Q5HYR2 192 aa17.47■□□□□ 0.39
CLN3-212ENST00000564574 GLT8D1Q68CQ7 371 aa17.47■□□□□ 0.39
CLN3-212ENST00000564574 WDR86Q86TI4 376 aa17.47■□□□□ 0.39
CLN3-212ENST00000564574 LURAP1LQ8IV03 231 aa17.47■□□□□ 0.39
CLN3-212ENST00000564574 OR52N4Q8NGI2 321 aa17.47■□□□□ 0.39
CLN3-212ENST00000564574 ZNF420Q8TAQ5 688 aaPredicted RBP17.47■□□□□ 0.39
CLN3-212ENST00000564574 NINJ1Q92982 152 aa17.47■□□□□ 0.39
CLN3-212ENST00000564574 FOXRED1Q96CU9 486 aaPredicted RBP17.47■□□□□ 0.39
CLN3-212ENST00000564574 NAA50Q9GZZ1 169 aaKnown RBP17.47■□□□□ 0.39
CLN3-212ENST00000564574 OR51I2Q9H344 312 aa17.47■□□□□ 0.39
CLN3-212ENST00000564574 FN3KRPQ9HA64 309 aa17.47■□□□□ 0.39
CLN3-212ENST00000564574 BEX4Q9NWD9 120 aaPredicted RBP17.47■□□□□ 0.39
CLN3-212ENST00000564574 NDUFA13Q9P0J0 144 aa17.47■□□□□ 0.39
CLN3-212ENST00000564574 DYSFO75923 2080 aa17.46■□□□□ 0.39
CLN3-212ENST00000564574 IFNL4K9M1U5 179 aa17.46■□□□□ 0.39
CLN3-212ENST00000564574 F12P00748 615 aaPredicted RBP17.46■□□□□ 0.39
CLN3-212ENST00000564574 GRPP07492 148 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms