RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 HIST2H2ABQ8IUE6 130 aaPredicted RBP9.53□□□□□ -0.88
USP3-220ENST00000561381 CMTM4Q8IZR5 234 aa9.53□□□□□ -0.88
USP3-220ENST00000561381 BBS1Q8NFJ9 593 aa9.53□□□□□ -0.88
USP3-220ENST00000561381 OR8B12Q8NGG6 310 aa9.53□□□□□ -0.88
USP3-220ENST00000561381 OTOSQ8NHW6 89 aa9.53□□□□□ -0.88
USP3-220ENST00000561381 ANGPTL6Q8NI99 470 aa9.53□□□□□ -0.88
USP3-220ENST00000561381 C8orf46Q8TAG6 207 aa9.53□□□□□ -0.88
USP3-220ENST00000561381 C17orf50Q8WW18 174 aa9.53□□□□□ -0.88
USP3-220ENST00000561381 PIGCQ92535 297 aa9.53□□□□□ -0.88
USP3-220ENST00000561381 CCDC124Q96CT7 223 aaKnown RBP9.53□□□□□ -0.88
USP3-220ENST00000561381 NSL1Q96IY1 281 aa9.53□□□□□ -0.88
USP3-220ENST00000561381 RNF170Q96K19 258 aa9.53□□□□□ -0.88
USP3-220ENST00000561381 CLPTM1LQ96KA5 538 aa9.53□□□□□ -0.88
USP3-220ENST00000561381 RTL8AQ9BWD3 113 aa9.53□□□□□ -0.88
USP3-220ENST00000561381 CHID1Q9BWS9 393 aa9.53□□□□□ -0.88
USP3-220ENST00000561381 MMP27Q9H306 513 aa9.53□□□□□ -0.88
USP3-220ENST00000561381 DPAGT1Q9H3H5 408 aa9.53□□□□□ -0.88
USP3-220ENST00000561381 MUC13Q9H3R2 512 aa9.53□□□□□ -0.88
USP3-220ENST00000561381 RGCCQ9H4X1 137 aa9.53□□□□□ -0.88
USP3-220ENST00000561381 MPC1Q9Y5U8 109 aa9.53□□□□□ -0.88
USP3-220ENST00000561381 VWFP04275 2813 aa9.52□□□□□ -0.88
USP3-220ENST00000561381 TMEM210A6NLX4 147 aa9.52□□□□□ -0.89
USP3-220ENST00000561381 PRR23D1E9PI22 279 aaPredicted RBP9.52□□□□□ -0.89
USP3-220ENST00000561381 CST1P01037 141 aa9.52□□□□□ -0.89
USP3-220ENST00000561381 FBP1P09467 338 aa9.52□□□□□ -0.89
USP3-220ENST00000561381 PRR23D2P0DMB1 279 aaPredicted RBP9.52□□□□□ -0.89
USP3-220ENST00000561381 RAP2AP10114 183 aa9.52□□□□□ -0.89
USP3-220ENST00000561381 PAICSP22234 425 aaKnown RBP9.52□□□□□ -0.89
USP3-220ENST00000561381 SAA4P35542 130 aa9.52□□□□□ -0.89
USP3-220ENST00000561381 GPM6AP51674 278 aa9.52□□□□□ -0.89
USP3-220ENST00000561381 MNAT1P51948 309 aa9.52□□□□□ -0.89
USP3-220ENST00000561381 HCCSP53701 268 aa9.52□□□□□ -0.89
USP3-220ENST00000561381 PSMA6P60900 246 aaKnown RBP9.52□□□□□ -0.89
USP3-220ENST00000561381 GINS1Q14691 196 aa9.52□□□□□ -0.89
USP3-220ENST00000561381 FAM76BQ5HYJ3 339 aa9.52□□□□□ -0.89
USP3-220ENST00000561381 DHRS7BQ6IAN0 325 aaPredicted RBP9.52□□□□□ -0.89
USP3-220ENST00000561381 CPOQ8IVL8 374 aa9.52□□□□□ -0.89
USP3-220ENST00000561381 ADGRG5Q8IZF4 528 aa9.52□□□□□ -0.89
USP3-220ENST00000561381 HS3ST5Q8IZT8 346 aa9.52□□□□□ -0.89
USP3-220ENST00000561381 FTMTQ8N4E7 242 aa9.52□□□□□ -0.89
USP3-220ENST00000561381 OR10Z1Q8NGY1 313 aa9.52□□□□□ -0.89
USP3-220ENST00000561381 TCF7L1Q9HCS4 588 aa9.52□□□□□ -0.89
USP3-220ENST00000561381 SLC25A10Q9UBX3 287 aaPredicted RBP9.52□□□□□ -0.89
USP3-220ENST00000561381 VPREB3Q9UKI3 123 aa9.52□□□□□ -0.89
USP3-220ENST00000561381 LRP12Q9Y561 859 aa9.52□□□□□ -0.89
USP3-220ENST00000561381 NOTCH1P46531 2555 aa9.52□□□□□ -0.89
USP3-220ENST00000561381 TGP01266 2768 aa9.51□□□□□ -0.89
USP3-220ENST00000561381 IGKV1D-17A0A075B6S4 117 aa9.51□□□□□ -0.89
USP3-220ENST00000561381 ZNF816-ZNF321PA0A0X1KG74 233 aa9.51□□□□□ -0.89
USP3-220ENST00000561381 MEIOCA2RUB1 952 aa9.51□□□□□ -0.89
USP3-220ENST00000561381 ARRDC5A6NEK1 342 aa9.51□□□□□ -0.89
USP3-220ENST00000561381 NKX6-3A6NJ46 265 aa9.51□□□□□ -0.89
USP3-220ENST00000561381 OR2AT4A6NND4 320 aa9.51□□□□□ -0.89
USP3-220ENST00000561381 PSMD9O00233 223 aa9.51□□□□□ -0.89
USP3-220ENST00000561381 SIGLEC5O15389 551 aa9.51□□□□□ -0.89
USP3-220ENST00000561381 ACAA1P09110 424 aaPredicted RBP9.51□□□□□ -0.89
USP3-220ENST00000561381 T-ENOLP0DO92 83 aa9.51□□□□□ -0.89
USP3-220ENST00000561381 NDUFB7P17568 137 aa9.51□□□□□ -0.89
USP3-220ENST00000561381 PRKACGP22612 351 aa9.51□□□□□ -0.89
USP3-220ENST00000561381 EEF1B2P24534 225 aaKnown RBP9.51□□□□□ -0.89
USP3-220ENST00000561381 GABRA2P47869 451 aa9.51□□□□□ -0.89
USP3-220ENST00000561381 EGR3Q06889 387 aa9.51□□□□□ -0.89
USP3-220ENST00000561381 CEP78Q5JTW2 689 aa9.51□□□□□ -0.89
USP3-220ENST00000561381 TMEM236Q5W0B7 351 aa9.51□□□□□ -0.89
USP3-220ENST00000561381 HIST2H2BDQ6DRA6 164 aa9.51□□□□□ -0.89
USP3-220ENST00000561381 HCP5Q6MZN7 132 aa9.51□□□□□ -0.89
USP3-220ENST00000561381 C1QL4Q86Z23 238 aa9.51□□□□□ -0.89
USP3-220ENST00000561381 ZDHHC23Q8IYP9 409 aa9.51□□□□□ -0.89
USP3-220ENST00000561381 ARHGAP24Q8N264 748 aa9.51□□□□□ -0.89
USP3-220ENST00000561381 ZNRF1Q8ND25 227 aa9.51□□□□□ -0.89
USP3-220ENST00000561381 NPRL2Q8WTW4 380 aa9.51□□□□□ -0.89
USP3-220ENST00000561381 LRTOMTQ8WZ04 291 aa9.51□□□□□ -0.89
USP3-220ENST00000561381 UBE2FQ969M7 185 aa9.51□□□□□ -0.89
USP3-220ENST00000561381 ASB9Q96DX5 294 aa9.51□□□□□ -0.89
USP3-220ENST00000561381 DUS3LQ96G46 650 aaKnown RBP9.51□□□□□ -0.89
USP3-220ENST00000561381 DMRTB1Q96MA1 342 aa9.51□□□□□ -0.89
USP3-220ENST00000561381 DNTTIP1Q9H147 329 aa9.51□□□□□ -0.89
USP3-220ENST00000561381 C16orf95Q9H693 158 aa9.51□□□□□ -0.89
USP3-220ENST00000561381 NLKQ9UBE8 527 aa9.51□□□□□ -0.89
USP3-220ENST00000561381 CAB39Q9Y376 341 aaPredicted RBP9.51□□□□□ -0.89
USP3-220ENST00000561381 PRKDCP78527 4128 aaKnown RBP9.51□□□□□ -0.89
USP3-220ENST00000561381 A0A1W2PQ09 198 aa9.5□□□□□ -0.89
USP3-220ENST00000561381 BTBD17A6NE02 478 aa9.5□□□□□ -0.89
USP3-220ENST00000561381 SLC22A31A6NKX4 558 aa9.5□□□□□ -0.89
USP3-220ENST00000561381 PRR32B1ATL7 298 aa9.5□□□□□ -0.89
USP3-220ENST00000561381 ZNF732B4DXR9 585 aa9.5□□□□□ -0.89
USP3-220ENST00000561381 TSPAN9O75954 239 aa9.5□□□□□ -0.89
USP3-220ENST00000561381 PAHP00439 452 aa9.5□□□□□ -0.89
USP3-220ENST00000561381 PSG2P11465 335 aa9.5□□□□□ -0.89
USP3-220ENST00000561381 ALOX5APP20292 161 aa9.5□□□□□ -0.89
USP3-220ENST00000561381 SLC2A5P22732 501 aa9.5□□□□□ -0.89
USP3-220ENST00000561381 GLRA1P23415 457 aa9.5□□□□□ -0.89
USP3-220ENST00000561381 PAX6P26367 422 aa9.5□□□□□ -0.89
USP3-220ENST00000561381 UBE2E1P51965 193 aa9.5□□□□□ -0.89
USP3-220ENST00000561381 CAV3P56539 151 aa9.5□□□□□ -0.89
USP3-220ENST00000561381 RPS7P62081 194 aaKnown RBP9.5□□□□□ -0.89
USP3-220ENST00000561381 CDK5Q00535 292 aa9.5□□□□□ -0.89
USP3-220ENST00000561381 SNCBQ16143 134 aa9.5□□□□□ -0.89
USP3-220ENST00000561381 FAM110DQ8TAY7 271 aaPredicted RBP9.5□□□□□ -0.89
USP3-220ENST00000561381 FAM81AQ8TBF8 368 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms