RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	MMP28	Q9H239	520 aa		10.3	□□□□□ -0.76
SHMT2-223	ENST00000556689	TCRBV3S1	A0A5B6	114 aa		10.29	□□□□□ -0.76
SHMT2-223	ENST00000556689	ZNF593	O00488	134 aa	Predicted RBP	10.29	□□□□□ -0.76
SHMT2-223	ENST00000556689	GNGT2	O14610	69 aa		10.29	□□□□□ -0.76
SHMT2-223	ENST00000556689	ANGPTL7	O43827	346 aa		10.29	□□□□□ -0.76
SHMT2-223	ENST00000556689	GADD45G	O95257	159 aa		10.29	□□□□□ -0.76
SHMT2-223	ENST00000556689	ANXA2	P07355	339 aa	Known RBP	10.29	□□□□□ -0.76
SHMT2-223	ENST00000556689	ACAA1	P09110	424 aa	Predicted RBP	10.29	□□□□□ -0.76
SHMT2-223	ENST00000556689	SPARC	P09486	303 aa		10.29	□□□□□ -0.76
SHMT2-223	ENST00000556689	CD28	P10747	220 aa		10.29	□□□□□ -0.76
SHMT2-223	ENST00000556689	CFL1	P23528	166 aa	Known RBP	10.29	□□□□□ -0.76
SHMT2-223	ENST00000556689	GNAL	P38405	381 aa		10.29	□□□□□ -0.76
SHMT2-223	ENST00000556689	IFNGR2	P38484	337 aa		10.29	□□□□□ -0.76
SHMT2-223	ENST00000556689	SLC15A1	P46059	708 aa		10.29	□□□□□ -0.76
SHMT2-223	ENST00000556689	IL5RA	Q01344	420 aa		10.29	□□□□□ -0.76
SHMT2-223	ENST00000556689	MS4A2	Q01362	244 aa		10.29	□□□□□ -0.76
SHMT2-223	ENST00000556689	DGUOK	Q16854	277 aa		10.29	□□□□□ -0.76
SHMT2-223	ENST00000556689	FOXB2	Q5VYV0	432 aa		10.29	□□□□□ -0.76
SHMT2-223	ENST00000556689	HCP5	Q6MZN7	132 aa		10.29	□□□□□ -0.76
SHMT2-223	ENST00000556689	LIAT1	Q6ZQX7	453 aa		10.29	□□□□□ -0.76
SHMT2-223	ENST00000556689	NDUFA11	Q86Y39	141 aa		10.29	□□□□□ -0.76
SHMT2-223	ENST00000556689	OR51L1	Q8NGJ5	315 aa		10.29	□□□□□ -0.76
SHMT2-223	ENST00000556689	OR10Z1	Q8NGY1	313 aa		10.29	□□□□□ -0.76
SHMT2-223	ENST00000556689	ANGPTL6	Q8NI99	470 aa		10.29	□□□□□ -0.76
SHMT2-223	ENST00000556689	GNPDA2	Q8TDQ7	276 aa		10.29	□□□□□ -0.76
SHMT2-223	ENST00000556689	ZNRF4	Q8WWF5	429 aa		10.29	□□□□□ -0.76
SHMT2-223	ENST00000556689	REEP6	Q96HR9	211 aa		10.29	□□□□□ -0.76
SHMT2-223	ENST00000556689	AJUBA	Q96IF1	538 aa		10.29	□□□□□ -0.76
SHMT2-223	ENST00000556689	GAFA1	Q96PS6	74 aa		10.29	□□□□□ -0.76
SHMT2-223	ENST00000556689	NKX3-1	Q99801	234 aa	Predicted RBP	10.29	□□□□□ -0.76
SHMT2-223	ENST00000556689	WDR13	Q9H1Z4	485 aa		10.29	□□□□□ -0.76
SHMT2-223	ENST00000556689	PPP1R3E	Q9H7J1	279 aa		10.29	□□□□□ -0.76
SHMT2-223	ENST00000556689	SP140L	Q9H930	580 aa		10.29	□□□□□ -0.76
SHMT2-223	ENST00000556689	RHBDD3	Q9Y3P4	386 aa		10.29	□□□□□ -0.76
SHMT2-223	ENST00000556689	AP4S1	Q9Y587	144 aa		10.29	□□□□□ -0.76
SHMT2-223	ENST00000556689	RYR3	Q15413	4870 aa		10.29	□□□□□ -0.76
SHMT2-223	ENST00000556689	ANXA2P2	A6NMY6	339 aa		10.28	□□□□□ -0.76
SHMT2-223	ENST00000556689	ZNF878	C9JN71	531 aa		10.28	□□□□□ -0.76
SHMT2-223	ENST00000556689	SIGLEC5	O15389	551 aa		10.28	□□□□□ -0.76
SHMT2-223	ENST00000556689	MPIG6B	O95866	241 aa		10.28	□□□□□ -0.76
SHMT2-223	ENST00000556689	PSKH1	P11801	424 aa		10.28	□□□□□ -0.76
SHMT2-223	ENST00000556689	PAX6	P26367	422 aa		10.28	□□□□□ -0.76
SHMT2-223	ENST00000556689	FMO3	P31513	532 aa		10.28	□□□□□ -0.76
SHMT2-223	ENST00000556689	GABRA2	P47869	451 aa		10.28	□□□□□ -0.76
SHMT2-223	ENST00000556689	GSS	P48637	474 aa		10.28	□□□□□ -0.76
SHMT2-223	ENST00000556689	CX3CR1	P49238	355 aa		10.28	□□□□□ -0.76
SHMT2-223	ENST00000556689	GSK3A	P49840	483 aa		10.28	□□□□□ -0.76
SHMT2-223	ENST00000556689	ENTPD1	P49961	510 aa		10.28	□□□□□ -0.76
SHMT2-223	ENST00000556689	GRB2	P62993	217 aa	Known RBP	10.28	□□□□□ -0.76
SHMT2-223	ENST00000556689	SNCB	Q16143	134 aa		10.28	□□□□□ -0.76
SHMT2-223	ENST00000556689	TEX30	Q5JUR7	227 aa		10.28	□□□□□ -0.76
SHMT2-223	ENST00000556689	LYPD4	Q6UWN0	246 aa		10.28	□□□□□ -0.76
SHMT2-223	ENST00000556689	FTMT	Q8N4E7	242 aa		10.28	□□□□□ -0.76
SHMT2-223	ENST00000556689	CSNK2A3	Q8NEV1	391 aa		10.28	□□□□□ -0.76
SHMT2-223	ENST00000556689	RPL3L	Q92901	407 aa	Known RBP	10.28	□□□□□ -0.76
SHMT2-223	ENST00000556689	RTL8A	Q9BWD3	113 aa		10.28	□□□□□ -0.76
SHMT2-223	ENST00000556689	PAPOLG	Q9BWT3	736 aa	Known RBP	10.28	□□□□□ -0.76
SHMT2-223	ENST00000556689	HEXA-AS1	Q9H8Q6	139 aa		10.28	□□□□□ -0.76
SHMT2-223	ENST00000556689	COMMD3-BMI1	R4GMX3	469 aa		10.28	□□□□□ -0.76
SHMT2-223	ENST00000556689	DNAH3	Q8TD57	4116 aa		10.27	□□□□□ -0.77
SHMT2-223	ENST00000556689	hCG_38984	A0A1B0GV85	526 aa		10.27	□□□□□ -0.77
SHMT2-223	ENST00000556689	TCRBV5S2	A0A599	114 aa		10.27	□□□□□ -0.77
SHMT2-223	ENST00000556689	TMEM210	A6NLX4	147 aa		10.27	□□□□□ -0.77
SHMT2-223	ENST00000556689	OR2AT4	A6NND4	320 aa		10.27	□□□□□ -0.77
SHMT2-223	ENST00000556689	AKR7A2	O43488	359 aa		10.27	□□□□□ -0.77
SHMT2-223	ENST00000556689	E2F6	O75461	281 aa		10.27	□□□□□ -0.77
SHMT2-223	ENST00000556689	APOC1	P02654	83 aa		10.27	□□□□□ -0.77
SHMT2-223	ENST00000556689	TFF1	P04155	84 aa		10.27	□□□□□ -0.77
SHMT2-223	ENST00000556689	FAH	P16930	419 aa		10.27	□□□□□ -0.77
SHMT2-223	ENST00000556689	FAS	P25445	335 aa		10.27	□□□□□ -0.77
SHMT2-223	ENST00000556689	HSD11B1	P28845	292 aa		10.27	□□□□□ -0.77
SHMT2-223	ENST00000556689	BMX	P51813	675 aa		10.27	□□□□□ -0.77
SHMT2-223	ENST00000556689	LGALS4	P56470	323 aa		10.27	□□□□□ -0.77
SHMT2-223	ENST00000556689	SPIB	Q01892	262 aa		10.27	□□□□□ -0.77
SHMT2-223	ENST00000556689	TSPAN31	Q12999	210 aa		10.27	□□□□□ -0.77
SHMT2-223	ENST00000556689	FAM76B	Q5HYJ3	339 aa		10.27	□□□□□ -0.77
SHMT2-223	ENST00000556689	ZBTB37	Q5TC79	503 aa		10.27	□□□□□ -0.77
SHMT2-223	ENST00000556689	KCTD8	Q6ZWB6	473 aa		10.27	□□□□□ -0.77
SHMT2-223	ENST00000556689	FAM86B1	Q8N7N1	296 aa		10.27	□□□□□ -0.77
SHMT2-223	ENST00000556689	ZNF511	Q8NB15	262 aa		10.27	□□□□□ -0.77
SHMT2-223	ENST00000556689	OR52H1	Q8NGJ2	320 aa		10.27	□□□□□ -0.77
SHMT2-223	ENST00000556689	PIFO	Q8TCI5	191 aa		10.27	□□□□□ -0.77
SHMT2-223	ENST00000556689	PYDC1	Q8WXC3	89 aa		10.27	□□□□□ -0.77
SHMT2-223	ENST00000556689	CITED2	Q99967	270 aa	Predicted RBP	10.27	□□□□□ -0.77
SHMT2-223	ENST00000556689	VCX	Q9H320	206 aa		10.27	□□□□□ -0.77
SHMT2-223	ENST00000556689	VCX3B	Q9H321	246 aa		10.27	□□□□□ -0.77
SHMT2-223	ENST00000556689	DCLRE1B	Q9H816	532 aa		10.27	□□□□□ -0.77
SHMT2-223	ENST00000556689	SERTAD4	Q9NUC0	356 aa		10.27	□□□□□ -0.77
SHMT2-223	ENST00000556689	NLK	Q9UBE8	527 aa		10.27	□□□□□ -0.77
SHMT2-223	ENST00000556689	MPC1	Q9Y5U8	109 aa		10.27	□□□□□ -0.77
SHMT2-223	ENST00000556689	TRBV23-1	A0A0A0MS06	115 aa		10.26	□□□□□ -0.77
SHMT2-223	ENST00000556689	MEGF11	A6BM72	1044 aa		10.26	□□□□□ -0.77
SHMT2-223	ENST00000556689	CHST1	O43916	411 aa		10.26	□□□□□ -0.77
SHMT2-223	ENST00000556689	GLCE	O94923	617 aa		10.26	□□□□□ -0.77
SHMT2-223	ENST00000556689	BAG2	O95816	211 aa		10.26	□□□□□ -0.77
SHMT2-223	ENST00000556689	VSIG8	P0DPA2	414 aa		10.26	□□□□□ -0.77
SHMT2-223	ENST00000556689	CD33	P20138	364 aa		10.26	□□□□□ -0.77
SHMT2-223	ENST00000556689	GK3P	Q14409	553 aa		10.26	□□□□□ -0.77
SHMT2-223	ENST00000556689	HABP2	Q14520	560 aa	Predicted RBP	10.26	□□□□□ -0.77
SHMT2-223	ENST00000556689	RCN1	Q15293	331 aa		10.26	□□□□□ -0.77

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