RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 SURF2Q15527 256 aaPredicted RBP4.28□□□□□ -1.72
LIMA1-214ENST00000552783 TSPO2Q5TGU0 170 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 CARD17Q5XLA6 110 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 NSUN5P2Q63ZY6 315 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 AWAT2Q6E213 333 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 FIP1L1Q6UN15 594 aaKnown RBP4.28□□□□□ -1.72
LIMA1-214ENST00000552783 HEPN1Q6WQI6 88 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 ZNF565Q8N9K5 539 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 OR10S1Q8NGN2 331 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 OR10D4PQ8NGN7 298 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 TCTEX1D2Q8WW35 142 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 GTF3AQ92664 365 aaKnown RBP4.28□□□□□ -1.72
LIMA1-214ENST00000552783 PMM1Q92871 262 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 MRPL24Q96A35 216 aaKnown RBP4.28□□□□□ -1.72
LIMA1-214ENST00000552783 HDHD3Q9BSH5 251 aaPredicted RBP4.28□□□□□ -1.72
LIMA1-214ENST00000552783 IER2Q9BTL4 223 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 RAB18Q9NP72 206 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 FAM86C1Q9NVL1 165 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 MED29Q9NX70 200 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 LSM5Q9Y4Y9 91 aaKnown RBP4.28□□□□□ -1.72
LIMA1-214ENST00000552783 SLCO1B1Q9Y6L6 691 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 R4GMQ9 66 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 MUC3AQ02505 3323 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 COL4A2P08572 1712 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 TGIF2-C20orf24A0A0A6YYL0 155 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 TMEM14DPA8MWL7 114 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 UTS2O95399 124 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 DIRAS3O95661 229 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 CST4P01036 141 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 PNMTP11086 282 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 FOSL1P15407 271 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 ZNF17P17021 662 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 DHPSP49366 369 aaPredicted RBP4.28□□□□□ -1.72
LIMA1-214ENST00000552783 CEBPGP53567 150 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 RPL27P61353 136 aaKnown RBP4.28□□□□□ -1.72
LIMA1-214ENST00000552783 LSM6P62312 80 aaKnown RBP4.28□□□□□ -1.72
LIMA1-214ENST00000552783 DEFA6Q01524 100 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 NHLH2Q02577 135 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 TSC22D1Q15714 1073 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 IAH1Q2TAA2 248 aaPredicted RBP4.28□□□□□ -1.72
LIMA1-214ENST00000552783 ZNF101Q8IZC7 436 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 OR9K2Q8NGE7 335 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 Q8WTZ3 238 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 SGK3Q96BR1 496 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 RAB3CQ96E17 227 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 C2orf50Q96LR7 162 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 GPER1Q99527 375 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 EMC6Q9BV81 110 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 TGIF2Q9GZN2 237 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 ADAM19Q9H013 955 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 ZNF107Q9UII5 783 aaPredicted RBP4.28□□□□□ -1.72
LIMA1-214ENST00000552783 KPTNQ9Y664 436 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 ARHGAP21Q5T5U3 1957 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 ZFHX4Q86UP3 3567 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 K7EPK0 472 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 ST8SIA5O15466 376 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 GIMD1P0DJR0 217 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 MDKP21741 143 aaPredicted RBP4.28□□□□□ -1.72
LIMA1-214ENST00000552783 PMELP40967 661 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 APOBEC1P41238 236 aaKnown RBP4.28□□□□□ -1.72
LIMA1-214ENST00000552783 RAB2AP61019 212 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 YPEL5P62699 121 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 FOXK1P85037 733 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 CYCSP99999 105 aaKnown RBP4.28□□□□□ -1.72
LIMA1-214ENST00000552783 EMC4Q5J8M3 183 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 CRIP3Q6Q6R5 217 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 GLIPR1L1Q6UWM5 242 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 NUP54Q7Z3B4 507 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 PEG10Q86TG7 708 aaKnown RBP4.28□□□□□ -1.72
LIMA1-214ENST00000552783 SLC22A18ASQ8N1D0 253 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 FAM71E2Q8N5Q1 922 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 HSD17B11Q8NBQ5 300 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 OR51E1Q8TCB6 317 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 NPRL2Q8WTW4 380 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 HPSE2Q8WWQ2 592 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 CNTNAP3Q9BZ76 1288 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 FAM206AQ9NX38 181 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 KLRF1Q9NZS2 232 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 SVILO95425 2214 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 A0A0A6YYH2 397 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 IGHV5-51A0A0C4DH38 117 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 A6NJ64 397 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 NPIPA5E9PKD4 350 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 C5orf67F2Z3F1 127 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 H0YL77 283 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 WRBO00258 174 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 TNFRSF10CO14798 259 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 NUDT21O43809 227 aaKnown RBP4.27□□□□□ -1.73
LIMA1-214ENST00000552783 HIST1H2BKO60814 126 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 OR2C1O95371 312 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 HIST1H2BJP06899 126 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 SNRPCP09234 159 aaKnown RBP4.27□□□□□ -1.73
LIMA1-214ENST00000552783 SERPINA2P20848 420 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 HIST1H2BOP23527 126 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 HIST1H2BBP33778 126 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 GUCA1AP43080 201 aaPredicted RBP4.27□□□□□ -1.73
LIMA1-214ENST00000552783 CDX1P47902 265 aaPredicted RBP4.27□□□□□ -1.73
LIMA1-214ENST00000552783 ZNF84P51523 738 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 HIST1H2BDP58876 126 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 HIST1H2BCP62807 126 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms