RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 NOVA1P51513 510 aaKnown RBP13.28□□□□□ -0.28
CUX1-214ENST00000550008 PIGPP57054 158 aa13.28□□□□□ -0.28
CUX1-214ENST00000550008 RPS4XP62701 263 aaKnown RBP13.28□□□□□ -0.28
CUX1-214ENST00000550008 ALKBH6Q3KRA9 238 aa13.28□□□□□ -0.28
CUX1-214ENST00000550008 LYG2Q86SG7 212 aa13.28□□□□□ -0.28
CUX1-214ENST00000550008 TMEM200AQ86VY9 491 aa13.28□□□□□ -0.28
CUX1-214ENST00000550008 CATSPERDQ86XM0 798 aa13.28□□□□□ -0.28
CUX1-214ENST00000550008 SAP25Q8TEE9 199 aa13.28□□□□□ -0.28
CUX1-214ENST00000550008 PP6455Q8WZ26 134 aa13.28□□□□□ -0.28
CUX1-214ENST00000550008 SDHCQ99643 169 aaPredicted RBP13.28□□□□□ -0.28
CUX1-214ENST00000550008 SULT4A1Q9BR01 284 aa13.28□□□□□ -0.28
CUX1-214ENST00000550008 ADAM19Q9H013 955 aa13.28□□□□□ -0.28
CUX1-214ENST00000550008 ZFHX2Q9C0A1 2572 aaPredicted RBP13.28□□□□□ -0.28
CUX1-214ENST00000550008 DXOO77932 396 aaKnown RBP13.28□□□□□ -0.28
CUX1-214ENST00000550008 SSPNQ14714 243 aa13.28□□□□□ -0.28
CUX1-214ENST00000550008 LINC01590Q5TEZ4 76 aa13.28□□□□□ -0.28
CUX1-214ENST00000550008 ZNF808Q8N4W9 903 aaPredicted RBP13.28□□□□□ -0.28
CUX1-214ENST00000550008 DTWD2Q8NBA8 298 aa13.28□□□□□ -0.28
CUX1-214ENST00000550008 TMEM229BQ8NBD8 167 aa13.28□□□□□ -0.28
CUX1-214ENST00000550008 PPP1R35Q8TAP8 253 aa13.28□□□□□ -0.28
CUX1-214ENST00000550008 SCARB1Q8WTV0 552 aa13.28□□□□□ -0.28
CUX1-214ENST00000550008 MRPL22Q9NWU5 206 aaKnown RBP13.28□□□□□ -0.28
CUX1-214ENST00000550008 PCDHGA9Q9Y5G4 932 aaKnown RBP13.28□□□□□ -0.28
CUX1-214ENST00000550008 SULT1C2O00338 296 aa13.27□□□□□ -0.28
CUX1-214ENST00000550008 DHRS3O75911 302 aa13.27□□□□□ -0.28
CUX1-214ENST00000550008 GSTP1P09211 210 aaKnown RBP13.27□□□□□ -0.28
CUX1-214ENST00000550008 HIST1H1DP16402 221 aaKnown RBP13.27□□□□□ -0.28
CUX1-214ENST00000550008 SRD5A2P31213 254 aa13.27□□□□□ -0.28
CUX1-214ENST00000550008 MAGEA5P43359 124 aa13.27□□□□□ -0.28
CUX1-214ENST00000550008 SIGIRRQ6IA17 410 aa13.27□□□□□ -0.28
CUX1-214ENST00000550008 TEX261Q6UWH6 196 aa13.27□□□□□ -0.28
CUX1-214ENST00000550008 WDR5BQ86VZ2 330 aa13.27□□□□□ -0.28
CUX1-214ENST00000550008 CDH26Q8IXH8 852 aa13.27□□□□□ -0.28
CUX1-214ENST00000550008 RTN4IP1Q8WWV3 396 aaPredicted RBP13.27□□□□□ -0.28
CUX1-214ENST00000550008 SGK3Q96BR1 496 aa13.27□□□□□ -0.28
CUX1-214ENST00000550008 SEH1LQ96EE3 360 aa13.27□□□□□ -0.28
CUX1-214ENST00000550008 MRPS18BQ9Y676 258 aaKnown RBP13.27□□□□□ -0.28
CUX1-214ENST00000550008 U3KQ87 197 aa13.27□□□□□ -0.28
CUX1-214ENST00000550008 TRGV5A0A0B4J1U4 118 aa13.27□□□□□ -0.28
CUX1-214ENST00000550008 CEBPZOSA8MTT3 80 aa13.27□□□□□ -0.28
CUX1-214ENST00000550008 IFNA17P01571 189 aa13.27□□□□□ -0.28
CUX1-214ENST00000550008 MEOX1P50221 254 aa13.27□□□□□ -0.28
CUX1-214ENST00000550008 RAC3P60763 192 aa13.27□□□□□ -0.28
CUX1-214ENST00000550008 LGI3Q8N145 548 aa13.27□□□□□ -0.28
CUX1-214ENST00000550008 OSR2Q8N2R0 312 aa13.27□□□□□ -0.28
CUX1-214ENST00000550008 PLXNA3P51805 1871 aa13.27□□□□□ -0.28
CUX1-214ENST00000550008 UPK3AO75631 287 aa13.27□□□□□ -0.29
CUX1-214ENST00000550008 TPPPO94811 219 aa13.27□□□□□ -0.29
CUX1-214ENST00000550008 MECP2P51608 486 aaKnown RBP13.27□□□□□ -0.29
CUX1-214ENST00000550008 ZBTB37Q5TC79 503 aa13.27□□□□□ -0.29
CUX1-214ENST00000550008 TFAP2EQ6VUC0 442 aa13.27□□□□□ -0.29
CUX1-214ENST00000550008 PBDC1Q9BVG4 233 aa13.27□□□□□ -0.29
CUX1-214ENST00000550008 RTN4RQ9BZR6 473 aa13.27□□□□□ -0.29
CUX1-214ENST00000550008 FZR1Q9UM11 496 aa13.27□□□□□ -0.29
CUX1-214ENST00000550008 ESPL1Q14674 2120 aa13.27□□□□□ -0.29
CUX1-214ENST00000550008 MEIKINA0A087WXM9 373 aa13.27□□□□□ -0.29
CUX1-214ENST00000550008 SPAARA0A1B0GVQ0 90 aa13.27□□□□□ -0.29
CUX1-214ENST00000550008 ZADH2Q8N4Q0 377 aa13.27□□□□□ -0.29
CUX1-214ENST00000550008 ZNF816-ZNF321PA0A0X1KG74 233 aa13.26□□□□□ -0.29
CUX1-214ENST00000550008 M0R296 226 aa13.26□□□□□ -0.29
CUX1-214ENST00000550008 MSTNO14793 375 aa13.26□□□□□ -0.29
CUX1-214ENST00000550008 ADAP1O75689 374 aa13.26□□□□□ -0.29
CUX1-214ENST00000550008 HLA-DQB1P01920 261 aa13.26□□□□□ -0.29
CUX1-214ENST00000550008 RPL23AP62750 156 aaKnown RBP13.26□□□□□ -0.29
CUX1-214ENST00000550008 ZNF169Q14929 603 aaPredicted RBP13.26□□□□□ -0.29
CUX1-214ENST00000550008 RNF133Q8WVZ7 376 aa13.26□□□□□ -0.29
CUX1-214ENST00000550008 NMNAT2Q9BZQ4 307 aa13.26□□□□□ -0.29
CUX1-214ENST00000550008 RNF150Q9ULK6 438 aa13.26□□□□□ -0.29
CUX1-214ENST00000550008 PPP1R3CQ9UQK1 317 aa13.26□□□□□ -0.29
CUX1-214ENST00000550008 HS3ST3B1Q9Y662 390 aa13.26□□□□□ -0.29
CUX1-214ENST00000550008 LYZL6O75951 148 aa13.26□□□□□ -0.29
CUX1-214ENST00000550008 PTAFRP25105 342 aa13.26□□□□□ -0.29
CUX1-214ENST00000550008 THBS4P35443 961 aa13.26□□□□□ -0.29
CUX1-214ENST00000550008 OR8G1Q15617 311 aa13.26□□□□□ -0.29
CUX1-214ENST00000550008 TMEM268Q5VZI3 342 aa13.26□□□□□ -0.29
CUX1-214ENST00000550008 DRAM2Q6UX65 266 aa13.26□□□□□ -0.29
CUX1-214ENST00000550008 DPPA2Q7Z7J5 298 aa13.26□□□□□ -0.29
CUX1-214ENST00000550008 NAA40Q86UY6 237 aa13.26□□□□□ -0.29
CUX1-214ENST00000550008 ZDHHC23Q8IYP9 409 aa13.26□□□□□ -0.29
CUX1-214ENST00000550008 SPSB2Q99619 263 aa13.26□□□□□ -0.29
CUX1-214ENST00000550008 H3BP45 60 aa13.26□□□□□ -0.29
CUX1-214ENST00000550008 LRP3O75074 770 aa13.26□□□□□ -0.29
CUX1-214ENST00000550008 ADRA2CP18825 462 aa13.26□□□□□ -0.29
CUX1-214ENST00000550008 TGIF1Q15583 401 aa13.26□□□□□ -0.29
CUX1-214ENST00000550008 PLA1AQ53H76 456 aa13.26□□□□□ -0.29
CUX1-214ENST00000550008 TUSC5Q8IXB3 177 aa13.26□□□□□ -0.29
CUX1-214ENST00000550008 OR6K3Q8NGY3 331 aa13.26□□□□□ -0.29
CUX1-214ENST00000550008 KIRREL1Q96J84 757 aa13.26□□□□□ -0.29
CUX1-214ENST00000550008 ELF5Q9UKW6 265 aaPredicted RBP13.26□□□□□ -0.29
CUX1-214ENST00000550008 TOR1AO14656 332 aa13.25□□□□□ -0.29
CUX1-214ENST00000550008 TTRP02766 147 aa13.25□□□□□ -0.29
CUX1-214ENST00000550008 CASP6P55212 293 aa13.25□□□□□ -0.29
CUX1-214ENST00000550008 SNTB1Q13884 538 aaKnown RBP13.25□□□□□ -0.29
CUX1-214ENST00000550008 KLF9Q13886 244 aaPredicted RBP13.25□□□□□ -0.29
CUX1-214ENST00000550008 ACOT7LQ6ZUV0 252 aa13.25□□□□□ -0.29
CUX1-214ENST00000550008 LHFPL2Q6ZUX7 228 aa13.25□□□□□ -0.29
CUX1-214ENST00000550008 ZPBPQ9BS86 351 aa13.25□□□□□ -0.29
CUX1-214ENST00000550008 CDC14BO60729 498 aa13.25□□□□□ -0.29
CUX1-214ENST00000550008 RAMP1O60894 148 aa13.25□□□□□ -0.29
CUX1-214ENST00000550008 TGM6O95932 706 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms