RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 E2F6O75461 281 aa7.31□□□□□ -1.24
USP28-205ENST00000537706 PTBP3O95758 552 aaKnown RBP7.31□□□□□ -1.24
USP28-205ENST00000537706 C1QCP02747 245 aa7.31□□□□□ -1.24
USP28-205ENST00000537706 FABP3P05413 133 aa7.31□□□□□ -1.24
USP28-205ENST00000537706 ASAH2BP0C7U1 165 aa7.31□□□□□ -1.24
USP28-205ENST00000537706 CEBPDP49716 269 aaPredicted RBP7.31□□□□□ -1.24
USP28-205ENST00000537706 DYNLT3P51808 116 aa7.31□□□□□ -1.24
USP28-205ENST00000537706 OR12D2P58182 307 aa7.31□□□□□ -1.24
USP28-205ENST00000537706 HOXA4Q00056 320 aaPredicted RBP7.31□□□□□ -1.24
USP28-205ENST00000537706 RPL18Q07020 188 aaKnown RBP7.31□□□□□ -1.24
USP28-205ENST00000537706 AQP6Q13520 282 aa7.31□□□□□ -1.24
USP28-205ENST00000537706 ZNF613Q6PF04 617 aa7.31□□□□□ -1.24
USP28-205ENST00000537706 FOXL2NBQ6ZUU3 175 aa7.31□□□□□ -1.24
USP28-205ENST00000537706 FAM185AQ8N0U4 392 aa7.31□□□□□ -1.24
USP28-205ENST00000537706 HSH2DQ96JZ2 352 aa7.31□□□□□ -1.24
USP28-205ENST00000537706 YTHDF1Q9BYJ9 559 aaKnown RBP7.31□□□□□ -1.24
USP28-205ENST00000537706 RBM38Q9H0Z9 239 aaKnown RBP7.31□□□□□ -1.24
USP28-205ENST00000537706 TMEM38AQ9H6F2 299 aa7.31□□□□□ -1.24
USP28-205ENST00000537706 POLE4Q9NR33 117 aa7.31□□□□□ -1.24
USP28-205ENST00000537706 ANGPT4Q9Y264 503 aa7.31□□□□□ -1.24
USP28-205ENST00000537706 LYVE1Q9Y5Y7 322 aa7.31□□□□□ -1.24
USP28-205ENST00000537706 A0A087WXM4 84 aa7.3□□□□□ -1.24
USP28-205ENST00000537706 IGKV1D-43A0A0B4J1Z2 117 aa7.3□□□□□ -1.24
USP28-205ENST00000537706 NPIPB13A6NJU9 1138 aa7.3□□□□□ -1.24
USP28-205ENST00000537706 NPIPB4C9JG80 1138 aa7.3□□□□□ -1.24
USP28-205ENST00000537706 CCL24O00175 119 aa7.3□□□□□ -1.24
USP28-205ENST00000537706 LPLP06858 475 aa7.3□□□□□ -1.24
USP28-205ENST00000537706 NUDT7P0C024 238 aa7.3□□□□□ -1.24
USP28-205ENST00000537706 CA6P23280 308 aa7.3□□□□□ -1.24
USP28-205ENST00000537706 COX7A1P24310 79 aa7.3□□□□□ -1.24
USP28-205ENST00000537706 ALDH3B2P48448 385 aa7.3□□□□□ -1.24
USP28-205ENST00000537706 TGM4P49221 684 aa7.3□□□□□ -1.24
USP28-205ENST00000537706 PRSS12P56730 875 aa7.3□□□□□ -1.24
USP28-205ENST00000537706 PCK2Q16822 640 aa7.3□□□□□ -1.24
USP28-205ENST00000537706 CNPY1Q3B7I2 92 aa7.3□□□□□ -1.24
USP28-205ENST00000537706 ZNF260Q3ZCT1 412 aa7.3□□□□□ -1.24
USP28-205ENST00000537706 TTC23Q5W5X9 447 aa7.3□□□□□ -1.24
USP28-205ENST00000537706 OR2T5Q6IEZ7 315 aa7.3□□□□□ -1.24
USP28-205ENST00000537706 MRPL21Q7Z2W9 205 aaKnown RBP7.3□□□□□ -1.24
USP28-205ENST00000537706 ZNF695Q8IW36 515 aa7.3□□□□□ -1.24
USP28-205ENST00000537706 OFCC1Q8IZS5 231 aa7.3□□□□□ -1.24
USP28-205ENST00000537706 OR2T29Q8NH02 315 aa7.3□□□□□ -1.24
USP28-205ENST00000537706 OR8U1Q8NH10 309 aa7.3□□□□□ -1.24
USP28-205ENST00000537706 LRRC29Q8WV35 223 aa7.3□□□□□ -1.24
USP28-205ENST00000537706 NMD3Q96D46 503 aaKnown RBP7.3□□□□□ -1.24
USP28-205ENST00000537706 RNFT2Q96EX2 444 aa7.3□□□□□ -1.24
USP28-205ENST00000537706 MBOAT4Q96T53 435 aa7.3□□□□□ -1.24
USP28-205ENST00000537706 M0R3H8 397 aa7.29□□□□□ -1.24
USP28-205ENST00000537706 KPNA4O00629 521 aaPredicted RBP7.29□□□□□ -1.24
USP28-205ENST00000537706 DUX4L4P0CJ87 422 aa7.29□□□□□ -1.24
USP28-205ENST00000537706 CRYBA2P53672 197 aa7.29□□□□□ -1.24
USP28-205ENST00000537706 SPIBQ01892 262 aa7.29□□□□□ -1.24
USP28-205ENST00000537706 TOP3AQ13472 1001 aaPredicted RBP7.29□□□□□ -1.24
USP28-205ENST00000537706 IL18R1Q13478 541 aa7.29□□□□□ -1.24
USP28-205ENST00000537706 ARMC4Q5T2S8 1044 aa7.29□□□□□ -1.24
USP28-205ENST00000537706 PGAP1Q75T13 922 aa7.29□□□□□ -1.24
USP28-205ENST00000537706 VTCN1Q7Z7D3 282 aa7.29□□□□□ -1.24
USP28-205ENST00000537706 MKXQ8IYA7 352 aa7.29□□□□□ -1.24
USP28-205ENST00000537706 COMMD1Q8N668 190 aa7.29□□□□□ -1.24
USP28-205ENST00000537706 SLC7A6Q92536 515 aa7.29□□□□□ -1.24
USP28-205ENST00000537706 NRBF2Q96F24 287 aa7.29□□□□□ -1.24
USP28-205ENST00000537706 TXNIPQ9H3M7 391 aa7.29□□□□□ -1.24
USP28-205ENST00000537706 WDR76Q9H967 626 aa7.29□□□□□ -1.24
USP28-205ENST00000537706 EMC7Q9NPA0 242 aa7.29□□□□□ -1.24
USP28-205ENST00000537706 VNN3Q9NY84 501 aa7.29□□□□□ -1.24
USP28-205ENST00000537706 BAG5Q9UL15 447 aa7.29□□□□□ -1.24
USP28-205ENST00000537706 ORC6Q9Y5N6 252 aa7.29□□□□□ -1.24
USP28-205ENST00000537706 IGLV1-36A0A0B4J1U3 117 aa7.29□□□□□ -1.24
USP28-205ENST00000537706 A6NIZ1 184 aa7.29□□□□□ -1.24
USP28-205ENST00000537706 AHCYL1O43865 530 aa7.29□□□□□ -1.24
USP28-205ENST00000537706 RHBDL1O75783 438 aa7.29□□□□□ -1.24
USP28-205ENST00000537706 CAV3P56539 151 aa7.29□□□□□ -1.24
USP28-205ENST00000537706 RAP1BP61224 184 aa7.29□□□□□ -1.24
USP28-205ENST00000537706 RAP1AP62834 184 aa7.29□□□□□ -1.24
USP28-205ENST00000537706 SCARB2Q14108 478 aa7.29□□□□□ -1.24
USP28-205ENST00000537706 SEC23BQ15437 767 aa7.29□□□□□ -1.24
USP28-205ENST00000537706 SSX2Q16385 188 aa7.29□□□□□ -1.24
USP28-205ENST00000537706 C9orf152Q5JTZ5 239 aa7.29□□□□□ -1.24
USP28-205ENST00000537706 ATPAF1Q5TC12 328 aaPredicted RBP7.29□□□□□ -1.24
USP28-205ENST00000537706 ZNF826PQ6ZT77 177 aa7.29□□□□□ -1.24
USP28-205ENST00000537706 CCDC80Q76M96 950 aa7.29□□□□□ -1.24
USP28-205ENST00000537706 TMEM179BQ7Z7N9 219 aa7.29□□□□□ -1.24
USP28-205ENST00000537706 HS3ST5Q8IZT8 346 aa7.29□□□□□ -1.24
USP28-205ENST00000537706 C8orf59Q8N0T1 100 aaPredicted RBP7.29□□□□□ -1.24
USP28-205ENST00000537706 ZNF555Q8NEP9 628 aa7.29□□□□□ -1.24
USP28-205ENST00000537706 MAL2Q969L2 176 aa7.29□□□□□ -1.24
USP28-205ENST00000537706 DGCR14Q96DF8 476 aaKnown RBP7.29□□□□□ -1.24
USP28-205ENST00000537706 MPP4Q96JB8 637 aa7.29□□□□□ -1.24
USP28-205ENST00000537706 MCHR1Q99705 422 aa7.29□□□□□ -1.24
USP28-205ENST00000537706 ATF6BQ99941 703 aa7.29□□□□□ -1.24
USP28-205ENST00000537706 FAM118AQ9NWS6 357 aa7.29□□□□□ -1.24
USP28-205ENST00000537706 ZNF391Q9UJN7 358 aa7.29□□□□□ -1.24
USP28-205ENST00000537706 POLR1DQ9Y2S0 133 aa7.29□□□□□ -1.24
USP28-205ENST00000537706 COMMD3-BMI1R4GMX3 469 aa7.29□□□□□ -1.24
USP28-205ENST00000537706 HUWE1Q7Z6Z7 4374 aaKnown RBP7.28□□□□□ -1.24
USP28-205ENST00000537706 IFNA14P01570 189 aa7.28□□□□□ -1.24
USP28-205ENST00000537706 ARG1P05089 322 aa7.28□□□□□ -1.24
USP28-205ENST00000537706 PGA5P0DJD9 388 aa7.28□□□□□ -1.24
USP28-205ENST00000537706 MED14OSP0DP75 135 aa7.28□□□□□ -1.24
USP28-205ENST00000537706 GSTT1P30711 240 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms