RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 CD200P41217 278 aa13.79□□□□□ -0.2
LSM1-204ENST00000522515 GPM6AP51674 278 aa13.79□□□□□ -0.2
LSM1-204ENST00000522515 LSM3P62310 102 aaKnown RBP13.79□□□□□ -0.2
LSM1-204ENST00000522515 PPP3R1P63098 170 aa13.79□□□□□ -0.2
LSM1-204ENST00000522515 PCGF3Q3KNV8 242 aa13.79□□□□□ -0.2
LSM1-204ENST00000522515 FAM209AQ5JX71 171 aa13.79□□□□□ -0.2
LSM1-204ENST00000522515 RNF144BQ7Z419 303 aa13.79□□□□□ -0.2
LSM1-204ENST00000522515 ANKRD13BQ86YJ7 626 aa13.79□□□□□ -0.2
LSM1-204ENST00000522515 ITLN1Q8WWA0 313 aa13.79□□□□□ -0.2
LSM1-204ENST00000522515 TECTBQ96PL2 329 aa13.79□□□□□ -0.2
LSM1-204ENST00000522515 RTL8AQ9BWD3 113 aa13.79□□□□□ -0.2
LSM1-204ENST00000522515 TCF7L1Q9HCS4 588 aa13.79□□□□□ -0.2
LSM1-204ENST00000522515 NKIRAS2Q9NYR9 191 aa13.79□□□□□ -0.2
LSM1-204ENST00000522515 SLC7A11Q9UPY5 501 aa13.79□□□□□ -0.2
LSM1-204ENST00000522515 IGKV1-27A0A075B6S5 117 aa13.79□□□□□ -0.2
LSM1-204ENST00000522515 FAM230AA0A1W2PPH8 454 aa13.79□□□□□ -0.2
LSM1-204ENST00000522515 SHISA3A0PJX4 238 aa13.79□□□□□ -0.2
LSM1-204ENST00000522515 PQLC2LA1A4F0 135 aa13.79□□□□□ -0.2
LSM1-204ENST00000522515 ZNF732B4DXR9 585 aa13.79□□□□□ -0.2
LSM1-204ENST00000522515 NDUFS7O75251 213 aa13.79□□□□□ -0.2
LSM1-204ENST00000522515 OCMP0CE72 109 aaPredicted RBP13.79□□□□□ -0.2
LSM1-204ENST00000522515 ADRA2CP18825 462 aa13.79□□□□□ -0.2
LSM1-204ENST00000522515 TNFSF4P23510 183 aa13.79□□□□□ -0.2
LSM1-204ENST00000522515 TGFBR1P36897 503 aa13.79□□□□□ -0.2
LSM1-204ENST00000522515 FUT6P51993 359 aa13.79□□□□□ -0.2
LSM1-204ENST00000522515 GDPGP1Q6ZNW5 385 aa13.79□□□□□ -0.2
LSM1-204ENST00000522515 CLVS1Q8IUQ0 354 aaPredicted RBP13.79□□□□□ -0.2
LSM1-204ENST00000522515 SPSB1Q96BD6 273 aa13.79□□□□□ -0.2
LSM1-204ENST00000522515 MEGF10Q96KG7 1140 aa13.79□□□□□ -0.2
LSM1-204ENST00000522515 SPACA5Q96QH8 159 aa13.79□□□□□ -0.2
LSM1-204ENST00000522515 RAB1BQ9H0U4 201 aa13.79□□□□□ -0.2
LSM1-204ENST00000522515 C14orf119Q9NWQ9 140 aa13.79□□□□□ -0.2
LSM1-204ENST00000522515 PLEKHA6Q9Y2H5 1048 aa13.79□□□□□ -0.2
LSM1-204ENST00000522515 GSTK1Q9Y2Q3 226 aa13.79□□□□□ -0.2
LSM1-204ENST00000522515 UNC79Q9P2D8 2635 aa13.79□□□□□ -0.2
LSM1-204ENST00000522515 APCP25054 2843 aa13.78□□□□□ -0.2
LSM1-204ENST00000522515 ABCA12Q86UK0 2595 aa13.78□□□□□ -0.2
LSM1-204ENST00000522515 OR5B21A6NL26 309 aa13.78□□□□□ -0.2
LSM1-204ENST00000522515 TPD52L2O43399 206 aaKnown RBP13.78□□□□□ -0.2
LSM1-204ENST00000522515 GABARAPO95166 117 aa13.78□□□□□ -0.2
LSM1-204ENST00000522515 HPXP02790 462 aa13.78□□□□□ -0.2
LSM1-204ENST00000522515 GRPP07492 148 aa13.78□□□□□ -0.2
LSM1-204ENST00000522515 HCKP08631 526 aa13.78□□□□□ -0.2
LSM1-204ENST00000522515 PRKACBP22694 351 aa13.78□□□□□ -0.2
LSM1-204ENST00000522515 BDKRB2P30411 391 aa13.78□□□□□ -0.2
LSM1-204ENST00000522515 SRP9P49458 86 aaKnown RBP13.78□□□□□ -0.2
LSM1-204ENST00000522515 RBP2P50120 134 aa13.78□□□□□ -0.2
LSM1-204ENST00000522515 GNG3P63215 75 aa13.78□□□□□ -0.2
LSM1-204ENST00000522515 MPPED2Q15777 294 aa13.78□□□□□ -0.2
LSM1-204ENST00000522515 FAM76BQ5HYJ3 339 aa13.78□□□□□ -0.2
LSM1-204ENST00000522515 PRAMEF6Q5VXH4 476 aa13.78□□□□□ -0.2
LSM1-204ENST00000522515 LRRTM1Q86UE6 522 aa13.78□□□□□ -0.2
LSM1-204ENST00000522515 DNAAF1Q8NEP3 725 aa13.78□□□□□ -0.2
LSM1-204ENST00000522515 OR52N4Q8NGI2 321 aa13.78□□□□□ -0.2
LSM1-204ENST00000522515 BORCS8Q96FH0 119 aa13.78□□□□□ -0.2
LSM1-204ENST00000522515 KCTD7Q96MP8 289 aa13.78□□□□□ -0.2
LSM1-204ENST00000522515 NKX3-1Q99801 234 aaPredicted RBP13.78□□□□□ -0.2
LSM1-204ENST00000522515 CXorf56Q9H5V9 222 aa13.78□□□□□ -0.2
LSM1-204ENST00000522515 SAP30LQ9HAJ7 183 aa13.78□□□□□ -0.2
LSM1-204ENST00000522515 TMEM138Q9NPI0 162 aa13.78□□□□□ -0.2
LSM1-204ENST00000522515 DECR2Q9NUI1 292 aa13.78□□□□□ -0.2
LSM1-204ENST00000522515 CSMD2Q7Z408 3487 aa13.77□□□□□ -0.2
LSM1-204ENST00000522515 PTBP3O95758 552 aaKnown RBP13.77□□□□□ -0.21
LSM1-204ENST00000522515 MTCP1P56278 107 aa13.77□□□□□ -0.21
LSM1-204ENST00000522515 MZT1Q08AG7 82 aa13.77□□□□□ -0.21
LSM1-204ENST00000522515 ZNF154Q13106 437 aa13.77□□□□□ -0.21
LSM1-204ENST00000522515 HNRNPA0Q13151 305 aaKnown RBP13.77□□□□□ -0.21
LSM1-204ENST00000522515 CTF1Q16619 201 aa13.77□□□□□ -0.21
LSM1-204ENST00000522515 CRIP3Q6Q6R5 217 aa13.77□□□□□ -0.21
LSM1-204ENST00000522515 CELF2-AS1Q8N7Q2 184 aa13.77□□□□□ -0.21
LSM1-204ENST00000522515 EGLN1Q9GZT9 426 aa13.77□□□□□ -0.21
LSM1-204ENST00000522515 SLITRK2Q9H156 845 aa13.77□□□□□ -0.21
LSM1-204ENST00000522515 SNTG1Q9NSN8 517 aa13.77□□□□□ -0.21
LSM1-204ENST00000522515 UFSP2Q9NUQ7 469 aa13.77□□□□□ -0.21
LSM1-204ENST00000522515 SPG11Q96JI7 2443 aa13.77□□□□□ -0.21
LSM1-204ENST00000522515 BAHCC1Q9P281 2608 aa13.77□□□□□ -0.21
LSM1-204ENST00000522515 TRAV1-2A0A0B4J238 106 aa13.76□□□□□ -0.21
LSM1-204ENST00000522515 TMEM210A6NLX4 147 aa13.76□□□□□ -0.21
LSM1-204ENST00000522515 LY6HO94772 140 aa13.76□□□□□ -0.21
LSM1-204ENST00000522515 MYL9P24844 172 aa13.76□□□□□ -0.21
LSM1-204ENST00000522515 RBMXP38159 391 aaKnown RBP13.76□□□□□ -0.21
LSM1-204ENST00000522515 VBP1P61758 197 aa13.76□□□□□ -0.21
LSM1-204ENST00000522515 NCS1P62166 190 aa13.76□□□□□ -0.21
LSM1-204ENST00000522515 TESK1Q15569 626 aa13.76□□□□□ -0.21
LSM1-204ENST00000522515 KISS1Q15726 138 aa13.76□□□□□ -0.21
LSM1-204ENST00000522515 DDI2Q5TDH0 399 aa13.76□□□□□ -0.21
LSM1-204ENST00000522515 LHFPL2Q6ZUX7 228 aa13.76□□□□□ -0.21
LSM1-204ENST00000522515 ANGPTL5Q86XS5 388 aa13.76□□□□□ -0.21
LSM1-204ENST00000522515 CALHM1Q8IU99 346 aa13.76□□□□□ -0.21
LSM1-204ENST00000522515 RFT1Q96AA3 541 aa13.76□□□□□ -0.21
LSM1-204ENST00000522515 LURAP1Q96LR2 239 aa13.76□□□□□ -0.21
LSM1-204ENST00000522515 OR51I2Q9H344 312 aa13.76□□□□□ -0.21
LSM1-204ENST00000522515 GCM1Q9NP62 436 aa13.76□□□□□ -0.21
LSM1-204ENST00000522515 CEPT1Q9Y6K0 416 aa13.76□□□□□ -0.21
LSM1-204ENST00000522515 MAGEB3O15480 346 aa13.75□□□□□ -0.21
LSM1-204ENST00000522515 ALDOBP05062 364 aa13.75□□□□□ -0.21
LSM1-204ENST00000522515 ERCC1P07992 297 aaPredicted RBP13.75□□□□□ -0.21
LSM1-204ENST00000522515 TNFRSF1AP19438 455 aa13.75□□□□□ -0.21
LSM1-204ENST00000522515 GATA4P43694 442 aa13.75□□□□□ -0.21
LSM1-204ENST00000522515 HAAOP46952 286 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms