RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-209	ENST00000469511	SP140L	Q9H930	580 aa		4.18	□□□□□ -1.74
PTPN4-209	ENST00000469511	EDA2R	Q9HAV5	297 aa		4.18	□□□□□ -1.74
PTPN4-209	ENST00000469511	KCNK9	Q9NPC2	374 aa		4.18	□□□□□ -1.74
PTPN4-209	ENST00000469511	HAO2	Q9NYQ3	351 aa		4.18	□□□□□ -1.74
PTPN4-209	ENST00000469511	STX18	Q9P2W9	335 aa	Known RBP	4.18	□□□□□ -1.74
PTPN4-209	ENST00000469511	RHCG	Q9UBD6	479 aa		4.18	□□□□□ -1.74
PTPN4-209	ENST00000469511	SLC25A10	Q9UBX3	287 aa	Predicted RBP	4.18	□□□□□ -1.74
PTPN4-209	ENST00000469511	LGALS13	Q9UHV8	139 aa		4.18	□□□□□ -1.74
PTPN4-209	ENST00000469511	SH3GLB1	Q9Y371	365 aa		4.18	□□□□□ -1.74
PTPN4-209	ENST00000469511	MED31	Q9Y3C7	131 aa		4.18	□□□□□ -1.74
PTPN4-209	ENST00000469511	N6AMT1	Q9Y5N5	214 aa		4.18	□□□□□ -1.74
PTPN4-209	ENST00000469511	IGKV1D-17	A0A075B6S4	117 aa		4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	PRSS37	A4D1T9	235 aa		4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	GMNC	A6NCL1	334 aa		4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	GGT3P	A6NGU5	568 aa		4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	VGLL3	A8MV65	326 aa		4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511		J3KTA2	159 aa		4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	SOCS2	O14508	198 aa		4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	UBD	O15205	165 aa		4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	GMDS	O60547	372 aa		4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	KHDRBS3	O75525	346 aa	Known RBP	4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	MUC1	P15941	1255 aa	Predicted RBP	4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	CHAT	P28329	748 aa		4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	GGT2	P36268	569 aa		4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	GPR4	P46093	362 aa		4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	CENPA	P49450	140 aa		4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	GSK3B	P49841	420 aa		4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	GZMM	P51124	257 aa		4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	SLC18A1	P54219	525 aa		4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	MTPN	P58546	118 aa		4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	FXYD6P3	P58550	94 aa		4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	TAS2R41	P59536	307 aa		4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	LSM6	P62312	80 aa	Known RBP	4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	ZNF273	Q14593	569 aa		4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	LRRC10	Q5BKY1	277 aa		4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	RABL3	Q5HYI8	236 aa		4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	SLC18B1	Q6NT16	456 aa		4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	ZNF529	Q6P280	563 aa		4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	MRPL21	Q7Z2W9	205 aa	Known RBP	4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	DPY19L4	Q7Z388	723 aa		4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	TSEN54	Q7Z6J9	526 aa	Known RBP	4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	EGFL6	Q8IUX8	553 aa		4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	NRM	Q8IXM6	262 aa		4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	MREG	Q8N565	214 aa		4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	OR1M1	Q8NGA1	313 aa		4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	OR4M1	Q8NGD0	313 aa		4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	ANGPTL6	Q8NI99	470 aa		4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	BCAS4	Q8TDM0	211 aa		4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	DPF1	Q92782	380 aa		4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	WAC	Q9BTA9	647 aa		4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	FN3K	Q9H479	309 aa		4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	ZCCHC4	Q9H5U6	513 aa		4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	A4GNT	Q9UNA3	340 aa		4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	SNX13	Q9Y5W8	968 aa		4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	GMEB1	Q9Y692	573 aa		4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	HECTD4	Q9Y4D8	3996 aa		4.17	□□□□□ -1.74
PTPN4-209	ENST00000469511	IGLV1-36	A0A0B4J1U3	117 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	PRSS29P	A6NIE9	313 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511		A6NIZ1	184 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	ODF3B	A8MYP8	253 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	BHLHE40	O14503	412 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	FFAR1	O14842	300 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	SIGLEC5	O15389	551 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	BIRC5	O15392	142 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	PTP4A3	O75365	173 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	OR5F1	O95221	314 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	IFNW1	P05000	195 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	CD14	P08571	375 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	ACAA1	P09110	424 aa	Predicted RBP	4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	NR2C1	P13056	603 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	MDH1	P40925	334 aa	Known RBP	4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	RBM34	P42696	430 aa	Known RBP	4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	GABRA2	P47869	451 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	PRKX	P51817	358 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	DLX6	P56179	175 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	RAP1B	P61224	184 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	RPL23A	P62750	156 aa	Known RBP	4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	RAP1A	P62834	184 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	TRAP1	Q12931	704 aa	Known RBP	4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	DEFB136	Q30KP8	78 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	RFX4	Q33E94	735 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	ABCA11P	Q4W5N1	156 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	KLHL12	Q53G59	568 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	OAF	Q86UD1	273 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	OR6V1	Q8N148	313 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	DPP10	Q8N608	796 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	C11orf65	Q8NCR3	313 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	GJC3	Q8NFK1	279 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	OR52H1	Q8NGJ2	320 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	FNDC8	Q8TC99	324 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	ZNRF4	Q8WWF5	429 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	SPDL1	Q96EA4	605 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	NOL4L	Q96MY1	436 aa	Predicted RBP	4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	ZNF570	Q96NI8	536 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	RAB3IP	Q96QF0	476 aa	Predicted RBP	4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	PITX2	Q99697	317 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	EBF4	Q9BQW3	602 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	C1orf43	Q9BWL3	253 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	HDHD2	Q9H0R4	259 aa		4.16	□□□□□ -1.74
PTPN4-209	ENST00000469511	YY1AP1	Q9H869	796 aa		4.16	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms