RNA–Protein interactions for RNA: ENST00000461326.1

CLK1-206, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 435 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-206ENST00000461326 TMEM27Q9HBJ8 222 aa2.34□□□□□ -2.03
CLK1-206ENST00000461326 RGS18Q9NS28 235 aa2.34□□□□□ -2.03
CLK1-206ENST00000461326 ZNF355PQ9NSJ1 428 aa2.34□□□□□ -2.03
CLK1-206ENST00000461326 RHBDD3Q9Y3P4 386 aa2.34□□□□□ -2.03
CLK1-206ENST00000461326 YTHDF2Q9Y5A9 579 aaKnown RBP2.34□□□□□ -2.03
CLK1-206ENST00000461326 COMMD3-BMI1R4GMX3 469 aa2.34□□□□□ -2.03
CLK1-206ENST00000461326 BRCA1P38398 1863 aaKnown RBP2.34□□□□□ -2.03
CLK1-206ENST00000461326 ANKRD31Q8N7Z5 1873 aa2.34□□□□□ -2.03
CLK1-206ENST00000461326 TNRC6CQ9HCJ0 1690 aaKnown RBP2.34□□□□□ -2.04
CLK1-206ENST00000461326 C10orf71Q711Q0 1435 aa2.34□□□□□ -2.04
CLK1-206ENST00000461326 LAMB2P55268 1798 aa2.33□□□□□ -2.04
CLK1-206ENST00000461326 DLEC1Q9Y238 1755 aa2.33□□□□□ -2.04
CLK1-206ENST00000461326 PXDNLA1KZ92 1463 aa2.33□□□□□ -2.04
CLK1-206ENST00000461326 SPEF2Q9C093 1822 aa2.33□□□□□ -2.04
CLK1-206ENST00000461326 A0A1W2PRF3 423 aa2.33□□□□□ -2.04
CLK1-206ENST00000461326 A0A1W2PRM7 423 aa2.33□□□□□ -2.04
CLK1-206ENST00000461326 H7C1H1 209 aa2.33□□□□□ -2.04
CLK1-206ENST00000461326 SIVA1O15304 175 aa2.33□□□□□ -2.04
CLK1-206ENST00000461326 SOCS1O15524 211 aa2.33□□□□□ -2.04
CLK1-206ENST00000461326 CHST10O43529 356 aa2.33□□□□□ -2.04
CLK1-206ENST00000461326 SLC16A7O60669 478 aa2.33□□□□□ -2.04
CLK1-206ENST00000461326 ZNF324O75467 553 aaPredicted RBP2.33□□□□□ -2.04
CLK1-206ENST00000461326 GCM2O75603 506 aaPredicted RBP2.33□□□□□ -2.04
CLK1-206ENST00000461326 APCSP02743 223 aa2.33□□□□□ -2.04
CLK1-206ENST00000461326 IGKV3-11P04433 115 aa2.33□□□□□ -2.04
CLK1-206ENST00000461326 OR8U9P0C7N5 309 aa2.33□□□□□ -2.04
CLK1-206ENST00000461326 OR56A5P0C7T3 313 aa2.33□□□□□ -2.04
CLK1-206ENST00000461326 PGA4P0DJD7 388 aa2.33□□□□□ -2.04
CLK1-206ENST00000461326 PGA3P0DJD8 388 aa2.33□□□□□ -2.04
CLK1-206ENST00000461326 CD37P11049 281 aa2.33□□□□□ -2.04
CLK1-206ENST00000461326 PMCHP20382 165 aa2.33□□□□□ -2.04
CLK1-206ENST00000461326 CPN2P22792 545 aa2.33□□□□□ -2.04
CLK1-206ENST00000461326 GABRR2P28476 465 aa2.33□□□□□ -2.04
CLK1-206ENST00000461326 TALDO1P37837 337 aa2.33□□□□□ -2.04
CLK1-206ENST00000461326 ERFP50548 548 aa2.33□□□□□ -2.04
CLK1-206ENST00000461326 BCAP31P51572 246 aa2.33□□□□□ -2.04
CLK1-206ENST00000461326 PSMD4P55036 377 aaKnown RBP2.33□□□□□ -2.04
CLK1-206ENST00000461326 OR2B8PP59922 312 aa2.33□□□□□ -2.04
CLK1-206ENST00000461326 ZNF829Q3KNS6 432 aaPredicted RBP2.33□□□□□ -2.04
CLK1-206ENST00000461326 AP1ARQ63HQ0 302 aa2.33□□□□□ -2.04
CLK1-206ENST00000461326 PRMT9Q6P2P2 845 aa2.33□□□□□ -2.04
CLK1-206ENST00000461326 SLC35D2Q76EJ3 337 aa2.33□□□□□ -2.04
CLK1-206ENST00000461326 COPS6Q7L5N1 327 aa2.33□□□□□ -2.04
CLK1-206ENST00000461326 RIMKLAQ8IXN7 391 aa2.33□□□□□ -2.04
CLK1-206ENST00000461326 OR8U1Q8NH10 309 aa2.33□□□□□ -2.04
CLK1-206ENST00000461326 ISOC2Q96AB3 205 aa2.33□□□□□ -2.04
CLK1-206ENST00000461326 AGMATQ9BSE5 352 aa2.33□□□□□ -2.04
CLK1-206ENST00000461326 ZNF430Q9H8G1 570 aaPredicted RBP2.33□□□□□ -2.04
CLK1-206ENST00000461326 IFNKQ9P0W0 207 aa2.33□□□□□ -2.04
CLK1-206ENST00000461326 DDX19BQ9UMR2 479 aa2.33□□□□□ -2.04
CLK1-206ENST00000461326 HES2Q9Y543 173 aa2.33□□□□□ -2.04
CLK1-206ENST00000461326 COL4A4P53420 1690 aaPredicted RBP2.33□□□□□ -2.04
CLK1-206ENST00000461326 DOCK9Q9BZ29 2069 aa2.33□□□□□ -2.04
CLK1-206ENST00000461326 ARFGEF1Q9Y6D6 1849 aa2.33□□□□□ -2.04
CLK1-206ENST00000461326 CCDC88AQ3V6T2 1871 aa2.33□□□□□ -2.04
CLK1-206ENST00000461326 MYO10Q9HD67 2058 aa2.32□□□□□ -2.04
CLK1-206ENST00000461326 TIAM2Q8IVF5 1701 aa2.32□□□□□ -2.04
CLK1-206ENST00000461326 DDX60Q8IY21 1712 aaKnown RBP2.32□□□□□ -2.04
CLK1-206ENST00000461326 IGKV2-28A0A075B6P5 120 aa2.32□□□□□ -2.04
CLK1-206ENST00000461326 A0A1B0GUH1 482 aa2.32□□□□□ -2.04
CLK1-206ENST00000461326 GOLGA8JA6NMD2 632 aa2.32□□□□□ -2.04
CLK1-206ENST00000461326 ZNF99A8MXY4 864 aaPredicted RBP2.32□□□□□ -2.04
CLK1-206ENST00000461326 RSPH10B2B2RC85 870 aa2.32□□□□□ -2.04
CLK1-206ENST00000461326 H3BN98 237 aa2.32□□□□□ -2.04
CLK1-206ENST00000461326 RBFOX2O43251 390 aaKnown RBP eCLIP2.32□□□□□ -2.04
CLK1-206ENST00000461326 REM1O75628 298 aa2.32□□□□□ -2.04
CLK1-206ENST00000461326 SCELO95171 688 aa2.32□□□□□ -2.04
CLK1-206ENST00000461326 IGKV2D-28P01615 120 aa2.32□□□□□ -2.04
CLK1-206ENST00000461326 KLK1P06870 262 aa2.32□□□□□ -2.04
CLK1-206ENST00000461326 CRYGCP07315 174 aa2.32□□□□□ -2.04
CLK1-206ENST00000461326 RSPH10BP0C881 870 aa2.32□□□□□ -2.04
CLK1-206ENST00000461326 GOLGA8HP0CJ92 632 aa2.32□□□□□ -2.04
CLK1-206ENST00000461326 PCK1P35558 622 aa2.32□□□□□ -2.04
CLK1-206ENST00000461326 RAB7AP51149 207 aa2.32□□□□□ -2.04
CLK1-206ENST00000461326 GFERP55789 205 aa2.32□□□□□ -2.04
CLK1-206ENST00000461326 LCN2P80188 198 aa2.32□□□□□ -2.04
CLK1-206ENST00000461326 CDK5Q00535 292 aa2.32□□□□□ -2.04
CLK1-206ENST00000461326 IFITM3Q01628 133 aa2.32□□□□□ -2.04
CLK1-206ENST00000461326 DGCR6Q14129 220 aa2.32□□□□□ -2.04
CLK1-206ENST00000461326 PTGES3Q15185 160 aaKnown RBP2.32□□□□□ -2.04
CLK1-206ENST00000461326 GABRA6Q16445 453 aa2.32□□□□□ -2.04
CLK1-206ENST00000461326 ZNF691Q5VV52 312 aa2.32□□□□□ -2.04
CLK1-206ENST00000461326 MLIPQ5VWP3 458 aa2.32□□□□□ -2.04
CLK1-206ENST00000461326 TMPRSS11AQ6ZMR5 421 aa2.32□□□□□ -2.04
CLK1-206ENST00000461326 RTL4Q6ZR62 310 aa2.32□□□□□ -2.04
CLK1-206ENST00000461326 TRAM1L1Q8N609 369 aa2.32□□□□□ -2.04
CLK1-206ENST00000461326 CSGALNACT2Q8N6G5 542 aa2.32□□□□□ -2.04
CLK1-206ENST00000461326 CIDECQ96AQ7 238 aaPredicted RBP2.32□□□□□ -2.04
CLK1-206ENST00000461326 FLYWCH2Q96CP2 140 aaKnown RBP2.32□□□□□ -2.04
CLK1-206ENST00000461326 ZNF317Q96PQ6 595 aaPredicted RBP2.32□□□□□ -2.04
CLK1-206ENST00000461326 RSG1Q9BU20 258 aa2.32□□□□□ -2.04
CLK1-206ENST00000461326 SLIRPQ9GZT3 109 aaKnown RBP2.32□□□□□ -2.04
CLK1-206ENST00000461326 LZTFL1Q9NQ48 299 aa2.32□□□□□ -2.04
CLK1-206ENST00000461326 RRAGDQ9NQL2 400 aaPredicted RBP2.32□□□□□ -2.04
CLK1-206ENST00000461326 TREX1Q9NSU2 369 aa2.32□□□□□ -2.04
CLK1-206ENST00000461326 SLC17A7Q9P2U7 560 aa2.32□□□□□ -2.04
CLK1-206ENST00000461326 MROH5Q6ZUA9 1318 aa2.32□□□□□ -2.04
CLK1-206ENST00000461326 MYH3P11055 1940 aa2.32□□□□□ -2.04
CLK1-206ENST00000461326 SLX4Q8IY92 1834 aa2.31□□□□□ -2.04
CLK1-206ENST00000461326 A0A1W2PPV4 95 aa2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms