RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 VDAC3Q9Y277 283 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 KLHDC2Q9Y2U9 406 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 BZW2Q9Y6E2 419 aaKnown RBP3.46□□□□□ -1.86
LINC00540-201ENST00000611481 V9GYY5 206 aaPredicted RBP3.46□□□□□ -1.86
LINC00540-201ENST00000611481 SMCO3A2RU48 225 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 LRIT2A6NDA9 550 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 OR6C70A6NIJ9 312 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 OR6C65A6NJZ3 312 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 LRRC30A6NM36 301 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 TRIM49D1C9J1S8 452 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 CLDN25C9JDP6 229 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 PRAC2D3DTV9 90 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 SYNGR3O43761 229 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 LHBP01229 141 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 S100A6P06703 90 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 CT62P0C5K7 136 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 CFC1BP0CG36 223 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 CFC1P0CG37 223 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 HSMCR30P0CW71 290 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 RPS3P23396 243 aaKnown RBP eCLIP3.45□□□□□ -1.86
LINC00540-201ENST00000611481 CALCRP30988 508 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 RPS5P46782 204 aaKnown RBP3.45□□□□□ -1.86
LINC00540-201ENST00000611481 TTPAP49638 278 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 EFNB2P52799 333 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 PRPS1P60891 318 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 PAX8Q06710 450 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 BIKQ13323 160 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 MAD2L1BPQ15013 274 aaPredicted RBP3.45□□□□□ -1.86
LINC00540-201ENST00000611481 FCN2Q15485 313 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 GLYR1Q49A26 553 aaPredicted RBP3.45□□□□□ -1.86
LINC00540-201ENST00000611481 HSP90AA4PQ58FG1 418 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 SLC25A53Q5H9E4 307 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 FAM71F2Q6NXP2 309 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 TMEM53Q6P2H8 277 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 CORO6Q6QEF8 472 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 DEGS2Q6QHC5 323 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 ZNF841Q6ZN19 808 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 NET1Q7Z628 596 aaPredicted RBP3.45□□□□□ -1.86
LINC00540-201ENST00000611481 ZNF554Q86TJ5 538 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 LINC00523Q86TU6 105 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 MYPOPQ86VE0 399 aaPredicted RBP3.45□□□□□ -1.86
LINC00540-201ENST00000611481 TPRA1Q86W33 373 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 LRRC6Q86X45 466 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 FAM9CQ8IZT9 166 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 PRELID2Q8N945 189 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 NUP37Q8NFH4 326 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 OR4F15Q8NGB8 312 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 OR4K14Q8NGD5 310 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 OR4D5Q8NGN0 318 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 OR1L4Q8NGR5 311 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 CLHC1Q8NHS4 586 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 ST8SIA1Q92185 356 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 RAB1CQ92928 201 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 UPRTQ96BW1 309 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 TIMD4Q96H15 378 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 SLC38A2Q96QD8 506 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 OR4K3Q96R72 315 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 ZNF300Q96RE9 604 aaPredicted RBP3.45□□□□□ -1.86
LINC00540-201ENST00000611481 ERGIC2Q96RQ1 377 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 AIF1LQ9BQI0 150 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 PSD2Q9BQI7 771 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 PELOQ9BRX2 385 aaKnown RBP3.45□□□□□ -1.86
LINC00540-201ENST00000611481 RPF2Q9H7B2 306 aaKnown RBP3.45□□□□□ -1.86
LINC00540-201ENST00000611481 MTHFD2LQ9H903 347 aaPredicted RBP3.45□□□□□ -1.86
LINC00540-201ENST00000611481 SPACA1Q9HBV2 294 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 SLC7A10Q9NS82 523 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 C1orf123Q9NWV4 160 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 FLRT3Q9NZU0 649 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 GNG12Q9UBI6 72 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 FZR1Q9UM11 496 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 USH1CQ9Y6N9 552 aa3.45□□□□□ -1.86
LINC00540-201ENST00000611481 TRBV5-5A0A0J9YX44 114 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 A0A1W2PPV4 95 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 SRRM4A7MD48 611 aaKnown RBP3.44□□□□□ -1.86
LINC00540-201ENST00000611481 C12orf71A8MTZ7 269 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 A8MVM7 634 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 E5RI56 91 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 H0YHG0 523 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 PDLIM1O00151 329 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 SH2D1BO14796 132 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 LSM1O15116 133 aaKnown RBP3.44□□□□□ -1.86
LINC00540-201ENST00000611481 ACOX3O15254 700 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 CFLARO15519 480 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 DEDDO75618 318 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 CST1P01037 141 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 MBP02144 154 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 CECR9P0C854 216 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 MPC1LP0DKB6 136 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 MYOD1P15172 320 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 NCK1P16333 377 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 ZNF3P17036 446 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 ME2P23368 584 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 GLRA1P23415 457 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 SHC1P29353 583 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 EVI2BP34910 448 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 TGFBR2P37173 567 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 HTR5AP47898 357 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 BCAP31P51572 246 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 SLC7A2P52569 658 aa3.44□□□□□ -1.86
LINC00540-201ENST00000611481 RAB11AP62491 216 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms