RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 LRP11Q86VZ4 500 aa13.79□□□□□ -0.2
SS18-211ENST00000578954 ZDHHC23Q8IYP9 409 aa13.79□□□□□ -0.2
SS18-211ENST00000578954 DNAAF1Q8NEP3 725 aa13.79□□□□□ -0.2
SS18-211ENST00000578954 PIGCQ92535 297 aa13.79□□□□□ -0.2
SS18-211ENST00000578954 ITPKCQ96DU7 683 aa13.79□□□□□ -0.2
SS18-211ENST00000578954 PAPOLGQ9BWT3 736 aaKnown RBP13.79□□□□□ -0.2
SS18-211ENST00000578954 MRPL37Q9BZE1 423 aaKnown RBP13.79□□□□□ -0.2
SS18-211ENST00000578954 SLC22A4Q9H015 551 aa13.79□□□□□ -0.2
SS18-211ENST00000578954 GPR173Q9NS66 373 aa13.79□□□□□ -0.2
SS18-211ENST00000578954 POU2F3Q9UKI9 436 aa13.79□□□□□ -0.2
SS18-211ENST00000578954 FZR1Q9UM11 496 aa13.79□□□□□ -0.2
SS18-211ENST00000578954 AK6Q9Y3D8 172 aaKnown RBP13.79□□□□□ -0.2
SS18-211ENST00000578954 SPTAN1Q13813 2472 aaKnown RBP13.79□□□□□ -0.2
SS18-211ENST00000578954 ZNF850A8MQ14 1090 aa13.78□□□□□ -0.2
SS18-211ENST00000578954 VSTM5A8MXK1 200 aa13.78□□□□□ -0.2
SS18-211ENST00000578954 TIMM8AO60220 97 aaPredicted RBP13.78□□□□□ -0.2
SS18-211ENST00000578954 CLDN1O95832 211 aa13.78□□□□□ -0.2
SS18-211ENST00000578954 MAS1P04201 325 aa13.78□□□□□ -0.2
SS18-211ENST00000578954 PRKACBP22694 351 aa13.78□□□□□ -0.2
SS18-211ENST00000578954 AZGP1P25311 298 aaKnown RBP13.78□□□□□ -0.2
SS18-211ENST00000578954 MMP15P51511 669 aa13.78□□□□□ -0.2
SS18-211ENST00000578954 OR10A3P58181 314 aa13.78□□□□□ -0.2
SS18-211ENST00000578954 SELENOVP59797 346 aa13.78□□□□□ -0.2
SS18-211ENST00000578954 EFNB3Q15768 340 aa13.78□□□□□ -0.2
SS18-211ENST00000578954 FAM166AQ6J272 317 aa13.78□□□□□ -0.2
SS18-211ENST00000578954 CRIP3Q6Q6R5 217 aa13.78□□□□□ -0.2
SS18-211ENST00000578954 VHLLQ6RSH7 139 aa13.78□□□□□ -0.2
SS18-211ENST00000578954 CROCCP3Q8IVE0 287 aa13.78□□□□□ -0.2
SS18-211ENST00000578954 BHLHE23Q8NDY6 225 aa13.78□□□□□ -0.2
SS18-211ENST00000578954 HPSE2Q8WWQ2 592 aa13.78□□□□□ -0.2
SS18-211ENST00000578954 NEUROG1Q92886 237 aa13.78□□□□□ -0.2
SS18-211ENST00000578954 FOXRED1Q96CU9 486 aaPredicted RBP13.78□□□□□ -0.2
SS18-211ENST00000578954 BARHL1Q9BZE3 327 aa13.78□□□□□ -0.2
SS18-211ENST00000578954 FGF23Q9GZV9 251 aaPredicted RBP13.78□□□□□ -0.2
SS18-211ENST00000578954 METTL17Q9H7H0 456 aaPredicted RBP13.78□□□□□ -0.2
SS18-211ENST00000578954 PPP1R3EQ9H7J1 279 aa13.78□□□□□ -0.2
SS18-211ENST00000578954 NEK6Q9HC98 313 aa13.78□□□□□ -0.2
SS18-211ENST00000578954 MYEF2Q9P2K5 600 aaKnown RBP13.78□□□□□ -0.2
SS18-211ENST00000578954 GPR160Q9UJ42 338 aa13.78□□□□□ -0.2
SS18-211ENST00000578954 V9GY05 133 aa13.78□□□□□ -0.2
SS18-211ENST00000578954 ANXA2P2A6NMY6 339 aa13.77□□□□□ -0.21
SS18-211ENST00000578954 A6NNC1 897 aa13.77□□□□□ -0.21
SS18-211ENST00000578954 AIPO00170 330 aa13.77□□□□□ -0.21
SS18-211ENST00000578954 OR4A8P0C604 315 aa13.77□□□□□ -0.21
SS18-211ENST00000578954 APOBEC3AP31941 199 aaPredicted RBP13.77□□□□□ -0.21
SS18-211ENST00000578954 RORCP51449 518 aa13.77□□□□□ -0.21
SS18-211ENST00000578954 FUT6P51993 359 aa13.77□□□□□ -0.21
SS18-211ENST00000578954 HNRNPA0Q13151 305 aaKnown RBP13.77□□□□□ -0.21
SS18-211ENST00000578954 MOGQ16653 247 aa13.77□□□□□ -0.21
SS18-211ENST00000578954 CEACAM21Q3KPI0 293 aa13.77□□□□□ -0.21
SS18-211ENST00000578954 C1orf100Q5SVJ3 147 aa13.77□□□□□ -0.21
SS18-211ENST00000578954 DDI2Q5TDH0 399 aa13.77□□□□□ -0.21
SS18-211ENST00000578954 PLCXD3Q63HM9 321 aa13.77□□□□□ -0.21
SS18-211ENST00000578954 GLT8D1Q68CQ7 371 aa13.77□□□□□ -0.21
SS18-211ENST00000578954 SFXN4Q6P4A7 337 aa13.77□□□□□ -0.21
SS18-211ENST00000578954 Q6ZR03 302 aa13.77□□□□□ -0.21
SS18-211ENST00000578954 OR52N4Q8NGI2 321 aa13.77□□□□□ -0.21
SS18-211ENST00000578954 OR5A2Q8NGI9 324 aa13.77□□□□□ -0.21
SS18-211ENST00000578954 OR5P3Q8WZ94 311 aa13.77□□□□□ -0.21
SS18-211ENST00000578954 DHRS9Q9BPW9 319 aa13.77□□□□□ -0.21
SS18-211ENST00000578954 SYT3Q9BQG1 590 aa13.77□□□□□ -0.21
SS18-211ENST00000578954 UQCC2Q9BRT2 126 aa13.77□□□□□ -0.21
SS18-211ENST00000578954 DCUN1D5Q9BTE7 237 aa13.77□□□□□ -0.21
SS18-211ENST00000578954 SLIRPQ9GZT3 109 aaKnown RBP13.77□□□□□ -0.21
SS18-211ENST00000578954 NXF2Q9GZY0 626 aaKnown RBP13.77□□□□□ -0.21
SS18-211ENST00000578954 TPK1Q9H3S4 243 aa13.77□□□□□ -0.21
SS18-211ENST00000578954 TMEM100Q9NV29 134 aa13.77□□□□□ -0.21
SS18-211ENST00000578954 PTTG2Q9NZH5 202 aa13.77□□□□□ -0.21
SS18-211ENST00000578954 PLEKHB1Q9UF11 243 aaPredicted RBP13.77□□□□□ -0.21
SS18-211ENST00000578954 DUSP13Q9UII6 198 aa13.77□□□□□ -0.21
SS18-211ENST00000578954 NOP16Q9Y3C1 178 aaKnown RBP13.77□□□□□ -0.21
SS18-211ENST00000578954 PQLC2LA1A4F0 135 aa13.76□□□□□ -0.21
SS18-211ENST00000578954 OR5B21A6NL26 309 aa13.76□□□□□ -0.21
SS18-211ENST00000578954 IFITM5A6NNB3 132 aa13.76□□□□□ -0.21
SS18-211ENST00000578954 MLNRO43193 412 aa13.76□□□□□ -0.21
SS18-211ENST00000578954 NCR1O76036 304 aa13.76□□□□□ -0.21
SS18-211ENST00000578954 CA6P23280 308 aa13.76□□□□□ -0.21
SS18-211ENST00000578954 SOX6P35712 828 aa13.76□□□□□ -0.21
SS18-211ENST00000578954 SERPINF1P36955 418 aa13.76□□□□□ -0.21
SS18-211ENST00000578954 CAV3P56539 151 aa13.76□□□□□ -0.21
SS18-211ENST00000578954 DYNC1I2Q13409 638 aaKnown RBP13.76□□□□□ -0.21
SS18-211ENST00000578954 DGUOKQ16854 277 aa13.76□□□□□ -0.21
SS18-211ENST00000578954 LHFPL2Q6ZUX7 228 aa13.76□□□□□ -0.21
SS18-211ENST00000578954 MOB3CQ70IA8 216 aa13.76□□□□□ -0.21
SS18-211ENST00000578954 OR13G1Q8NGZ3 307 aa13.76□□□□□ -0.21
SS18-211ENST00000578954 KCTD12Q96CX2 325 aaKnown RBP13.76□□□□□ -0.21
SS18-211ENST00000578954 PLK3Q9H4B4 646 aa13.76□□□□□ -0.21
SS18-211ENST00000578954 CYSLTR2Q9NS75 346 aa13.76□□□□□ -0.21
SS18-211ENST00000578954 CISD1Q9NZ45 108 aaKnown RBP13.76□□□□□ -0.21
SS18-211ENST00000578954 SLC7A11Q9UPY5 501 aa13.76□□□□□ -0.21
SS18-211ENST00000578954 A3GALT2U3KPV4 340 aa13.76□□□□□ -0.21
SS18-211ENST00000578954 PMF1-BGLAPU3KQ54 211 aa13.76□□□□□ -0.21
SS18-211ENST00000578954 A0A1W2PPR1 153 aa13.75□□□□□ -0.21
SS18-211ENST00000578954 SMIM30A4D0T7 59 aa13.75□□□□□ -0.21
SS18-211ENST00000578954 SLC17A2O00624 439 aa13.75□□□□□ -0.21
SS18-211ENST00000578954 MAGEB3O15480 346 aa13.75□□□□□ -0.21
SS18-211ENST00000578954 ADH4P08319 380 aa13.75□□□□□ -0.21
SS18-211ENST00000578954 HCKP08631 526 aa13.75□□□□□ -0.21
SS18-211ENST00000578954 THBS2P35442 1172 aa13.75□□□□□ -0.21
SS18-211ENST00000578954 RIN1Q13671 783 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms