RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 TGM4P49221 684 aa13.24□□□□□ -0.29
CLN3-229ENST00000567963 FAM76BQ5HYJ3 339 aa13.24□□□□□ -0.29
CLN3-229ENST00000567963 ATPAF1Q5TC12 328 aaPredicted RBP13.24□□□□□ -0.29
CLN3-229ENST00000567963 PLBD1Q6P4A8 553 aa13.24□□□□□ -0.29
CLN3-229ENST00000567963 C17orf107Q6ZR85 190 aa13.24□□□□□ -0.29
CLN3-229ENST00000567963 TMEM179BQ7Z7N9 219 aa13.24□□□□□ -0.29
CLN3-229ENST00000567963 PIP4P2Q8N4L2 257 aa13.24□□□□□ -0.29
CLN3-229ENST00000567963 FAM216BQ8N7L0 139 aa13.24□□□□□ -0.29
CLN3-229ENST00000567963 OR5T2Q8NGG2 359 aa13.24□□□□□ -0.29
CLN3-229ENST00000567963 MICU1Q9BPX6 476 aa13.24□□□□□ -0.29
CLN3-229ENST00000567963 HAO2Q9NYQ3 351 aa13.24□□□□□ -0.29
CLN3-229ENST00000567963 CLPSL1A2RUU4 121 aa13.23□□□□□ -0.29
CLN3-229ENST00000567963 ZNF850A8MQ14 1090 aa13.23□□□□□ -0.29
CLN3-229ENST00000567963 NDUFB3O43676 98 aa13.23□□□□□ -0.29
CLN3-229ENST00000567963 SELENOFO60613 162 aa13.23□□□□□ -0.29
CLN3-229ENST00000567963 IGHV4-59P01825 116 aa13.23□□□□□ -0.29
CLN3-229ENST00000567963 ACKR3P25106 362 aa13.23□□□□□ -0.29
CLN3-229ENST00000567963 POU1F1P28069 291 aa13.23□□□□□ -0.29
CLN3-229ENST00000567963 IKZF1Q13422 519 aa13.23□□□□□ -0.29
CLN3-229ENST00000567963 GINS1Q14691 196 aa13.23□□□□□ -0.29
CLN3-229ENST00000567963 STUMQ69YW2 141 aa13.23□□□□□ -0.29
CLN3-229ENST00000567963 METAP1DQ6UB28 335 aaPredicted RBP13.23□□□□□ -0.29
CLN3-229ENST00000567963 LDLRAD3Q86YD5 345 aa13.23□□□□□ -0.29
CLN3-229ENST00000567963 ADGRG5Q8IZF4 528 aa13.23□□□□□ -0.29
CLN3-229ENST00000567963 ZNF454Q8N9F8 522 aa13.23□□□□□ -0.29
CLN3-229ENST00000567963 OR5P3Q8WZ94 311 aa13.23□□□□□ -0.29
CLN3-229ENST00000567963 CCDC124Q96CT7 223 aaKnown RBP13.23□□□□□ -0.29
CLN3-229ENST00000567963 CLPTM1LQ96KA5 538 aa13.23□□□□□ -0.29
CLN3-229ENST00000567963 LYZL4Q96KX0 146 aa13.23□□□□□ -0.29
CLN3-229ENST00000567963 RTL8AQ9BWD3 113 aa13.23□□□□□ -0.29
CLN3-229ENST00000567963 C1orf21Q9H246 121 aa13.23□□□□□ -0.29
CLN3-229ENST00000567963 TAS2R1Q9NYW7 299 aa13.23□□□□□ -0.29
CLN3-229ENST00000567963 PDP1Q9P0J1 537 aaPredicted RBP13.23□□□□□ -0.29
CLN3-229ENST00000567963 ONECUT1Q9UBC0 465 aa13.23□□□□□ -0.29
CLN3-229ENST00000567963 TMEM210A6NLX4 147 aa13.23□□□□□ -0.29
CLN3-229ENST00000567963 GNGT2O14610 69 aa13.23□□□□□ -0.29
CLN3-229ENST00000567963 PRODHO43272 600 aa13.23□□□□□ -0.29
CLN3-229ENST00000567963 CST4P01036 141 aa13.23□□□□□ -0.29
CLN3-229ENST00000567963 CDK5Q00535 292 aa13.23□□□□□ -0.29
CLN3-229ENST00000567963 PRDX4Q13162 271 aa13.23□□□□□ -0.29
CLN3-229ENST00000567963 LRRC10Q5BKY1 277 aa13.23□□□□□ -0.29
CLN3-229ENST00000567963 OR10Z1Q8NGY1 313 aa13.23□□□□□ -0.29
CLN3-229ENST00000567963 NPRL2Q8WTW4 380 aa13.23□□□□□ -0.29
CLN3-229ENST00000567963 CANT1Q8WVQ1 401 aa13.23□□□□□ -0.29
CLN3-229ENST00000567963 PIGCQ92535 297 aa13.23□□□□□ -0.29
CLN3-229ENST00000567963 RPL3LQ92901 407 aaKnown RBP13.23□□□□□ -0.29
CLN3-229ENST00000567963 PKP2Q99959 881 aa13.23□□□□□ -0.29
CLN3-229ENST00000567963 CITED1Q99966 193 aa13.23□□□□□ -0.29
CLN3-229ENST00000567963 DCTN5Q9BTE1 182 aa13.23□□□□□ -0.29
CLN3-229ENST00000567963 DNTTIP1Q9H147 329 aa13.23□□□□□ -0.29
CLN3-229ENST00000567963 WDR13Q9H1Z4 485 aa13.23□□□□□ -0.29
CLN3-229ENST00000567963 ABCB9Q9NP78 766 aa13.23□□□□□ -0.29
CLN3-229ENST00000567963 GPR137BO60478 399 aa13.22□□□□□ -0.29
CLN3-229ENST00000567963 FAM107AO95990 144 aa13.22□□□□□ -0.29
CLN3-229ENST00000567963 HMGN1P05114 100 aa13.22□□□□□ -0.29
CLN3-229ENST00000567963 OSMP13725 252 aa13.22□□□□□ -0.29
CLN3-229ENST00000567963 GMFBP60983 142 aa13.22□□□□□ -0.29
CLN3-229ENST00000567963 OCLNQ16625 522 aa13.22□□□□□ -0.29
CLN3-229ENST00000567963 CPOQ8IVL8 374 aa13.22□□□□□ -0.29
CLN3-229ENST00000567963 CMTM4Q8IZR5 234 aa13.22□□□□□ -0.29
CLN3-229ENST00000567963 OR8B12Q8NGG6 310 aa13.22□□□□□ -0.29
CLN3-229ENST00000567963 C8orf46Q8TAG6 207 aa13.22□□□□□ -0.29
CLN3-229ENST00000567963 RNF170Q96K19 258 aa13.22□□□□□ -0.29
CLN3-229ENST00000567963 RAB3IPQ96QF0 476 aaPredicted RBP13.22□□□□□ -0.29
CLN3-229ENST00000567963 FGF23Q9GZV9 251 aaPredicted RBP13.22□□□□□ -0.29
CLN3-229ENST00000567963 DPAGT1Q9H3H5 408 aa13.22□□□□□ -0.29
CLN3-229ENST00000567963 NIPAL2Q9H841 368 aa13.22□□□□□ -0.29
CLN3-229ENST00000567963 SNTG1Q9NSN8 517 aa13.22□□□□□ -0.29
CLN3-229ENST00000567963 DNAJB11Q9UBS4 358 aa13.22□□□□□ -0.29
CLN3-229ENST00000567963 ZNF391Q9UJN7 358 aa13.22□□□□□ -0.29
CLN3-229ENST00000567963 FAM96BQ9Y3D0 163 aa13.22□□□□□ -0.29
CLN3-229ENST00000567963 RNF114Q9Y508 228 aa13.22□□□□□ -0.29
CLN3-229ENST00000567963 AQP12BA6NM10 295 aa13.21□□□□□ -0.3
CLN3-229ENST00000567963 AKR7A2O43488 359 aa13.21□□□□□ -0.3
CLN3-229ENST00000567963 SELLP14151 372 aa13.21□□□□□ -0.3
CLN3-229ENST00000567963 PSMA6P60900 246 aaKnown RBP13.21□□□□□ -0.3
CLN3-229ENST00000567963 DEFA6Q01524 100 aa13.21□□□□□ -0.3
CLN3-229ENST00000567963 SLC35D3Q5M8T2 416 aa13.21□□□□□ -0.3
CLN3-229ENST00000567963 BRICD5Q6PL45 260 aa13.21□□□□□ -0.3
CLN3-229ENST00000567963 ZNF788Q6ZQV5 615 aa13.21□□□□□ -0.3
CLN3-229ENST00000567963 KCTD8Q6ZWB6 473 aa13.21□□□□□ -0.3
CLN3-229ENST00000567963 AQP12AQ8IXF9 295 aa13.21□□□□□ -0.3
CLN3-229ENST00000567963 HS3ST5Q8IZT8 346 aa13.21□□□□□ -0.3
CLN3-229ENST00000567963 Q8N7P7 452 aa13.21□□□□□ -0.3
CLN3-229ENST00000567963 CCDC197Q8NCU1 140 aa13.21□□□□□ -0.3
CLN3-229ENST00000567963 LINC01006Q8NI28 216 aa13.21□□□□□ -0.3
CLN3-229ENST00000567963 ANGPTL6Q8NI99 470 aa13.21□□□□□ -0.3
CLN3-229ENST00000567963 HPSE2Q8WWQ2 592 aa13.21□□□□□ -0.3
CLN3-229ENST00000567963 THTPAQ9BU02 230 aa13.21□□□□□ -0.3
CLN3-229ENST00000567963 ZNF556Q9HAH1 456 aa13.21□□□□□ -0.3
CLN3-229ENST00000567963 SIRT7Q9NRC8 400 aa13.21□□□□□ -0.3
CLN3-229ENST00000567963 KLHDC2Q9Y2U9 406 aa13.21□□□□□ -0.3
CLN3-229ENST00000567963 LRP12Q9Y561 859 aa13.21□□□□□ -0.3
CLN3-229ENST00000567963 RNASEK-C17orf49H0YIS7 233 aa13.2□□□□□ -0.3
CLN3-229ENST00000567963 ALOX5APP20292 161 aa13.2□□□□□ -0.3
CLN3-229ENST00000567963 PRKACGP22612 351 aa13.2□□□□□ -0.3
CLN3-229ENST00000567963 SLC2A5P22732 501 aa13.2□□□□□ -0.3
CLN3-229ENST00000567963 DCTDP32321 178 aa13.2□□□□□ -0.3
CLN3-229ENST00000567963 HCCSP53701 268 aa13.2□□□□□ -0.3
CLN3-229ENST00000567963 KRTAP10-3P60369 221 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms