RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 NOX4Q9NPH5 578 aa17.57■□□□□ 0.4
CLN3-212ENST00000564574 NKIRAS2Q9NYR9 191 aa17.57■□□□□ 0.4
CLN3-212ENST00000564574 CKLFQ9UBR5 152 aa17.57■□□□□ 0.4
CLN3-212ENST00000564574 EDARQ9UNE0 448 aa17.57■□□□□ 0.4
CLN3-212ENST00000564574 FOXJ3Q9UPW0 622 aa17.57■□□□□ 0.4
CLN3-212ENST00000564574 A6NIN4 97 aa17.56■□□□□ 0.4
CLN3-212ENST00000564574 MLNRO43193 412 aa17.56■□□□□ 0.4
CLN3-212ENST00000564574 NAT2P11245 290 aa17.56■□□□□ 0.4
CLN3-212ENST00000564574 GADD45AP24522 165 aa17.56■□□□□ 0.4
CLN3-212ENST00000564574 PCGF3Q3KNV8 242 aa17.56■□□□□ 0.4
CLN3-212ENST00000564574 HSD17B12Q53GQ0 312 aa17.56■□□□□ 0.4
CLN3-212ENST00000564574 FAM209AQ5JX71 171 aa17.56■□□□□ 0.4
CLN3-212ENST00000564574 PLCXD3Q63HM9 321 aa17.56■□□□□ 0.4
CLN3-212ENST00000564574 OR8S1Q8NH09 359 aa17.56■□□□□ 0.4
CLN3-212ENST00000564574 IGFBPL1Q8WX77 278 aa17.56■□□□□ 0.4
CLN3-212ENST00000564574 ELMOD3Q96FG2 381 aa17.56■□□□□ 0.4
CLN3-212ENST00000564574 MICU1Q9BPX6 476 aa17.56■□□□□ 0.4
CLN3-212ENST00000564574 GPR173Q9NS66 373 aa17.56■□□□□ 0.4
CLN3-212ENST00000564574 GSTK1Q9Y2Q3 226 aa17.56■□□□□ 0.4
CLN3-212ENST00000564574 UTP20O75691 2785 aaKnown RBP17.56■□□□□ 0.4
CLN3-212ENST00000564574 H7C417 338 aa17.55■□□□□ 0.4
CLN3-212ENST00000564574 PIN1P1O15428 100 aa17.55■□□□□ 0.4
CLN3-212ENST00000564574 SPRY3O43610 288 aa17.55■□□□□ 0.4
CLN3-212ENST00000564574 SULT1B1O43704 296 aa17.55■□□□□ 0.4
CLN3-212ENST00000564574 IGHV1-46P01743 117 aa17.55■□□□□ 0.4
CLN3-212ENST00000564574 ERCC1P07992 297 aaPredicted RBP17.55■□□□□ 0.4
CLN3-212ENST00000564574 CD55P08174 381 aa17.55■□□□□ 0.4
CLN3-212ENST00000564574 IGFBP3P17936 291 aaPredicted RBP17.55■□□□□ 0.4
CLN3-212ENST00000564574 ATF1P18846 271 aa17.55■□□□□ 0.4
CLN3-212ENST00000564574 RAB3AP20336 220 aa17.55■□□□□ 0.4
CLN3-212ENST00000564574 PPP3R1P63098 170 aa17.55■□□□□ 0.4
CLN3-212ENST00000564574 INSL4Q14641 139 aa17.55■□□□□ 0.4
CLN3-212ENST00000564574 CEACAM21Q3KPI0 293 aa17.55■□□□□ 0.4
CLN3-212ENST00000564574 ZNF529Q6P280 563 aa17.55■□□□□ 0.4
CLN3-212ENST00000564574 OR2Z1Q8NG97 314 aa17.55■□□□□ 0.4
CLN3-212ENST00000564574 OR5A2Q8NGI9 324 aa17.55■□□□□ 0.4
CLN3-212ENST00000564574 OR5P3Q8WZ94 311 aa17.55■□□□□ 0.4
CLN3-212ENST00000564574 GTF3AQ92664 365 aaKnown RBP17.55■□□□□ 0.4
CLN3-212ENST00000564574 ITPKCQ96DU7 683 aa17.55■□□□□ 0.4
CLN3-212ENST00000564574 CCL19Q99731 98 aa17.55■□□□□ 0.4
CLN3-212ENST00000564574 RTL8AQ9BWD3 113 aa17.55■□□□□ 0.4
CLN3-212ENST00000564574 FUNDC2Q9BWH2 189 aa17.55■□□□□ 0.4
CLN3-212ENST00000564574 CACNG6Q9BXT2 260 aa17.55■□□□□ 0.4
CLN3-212ENST00000564574 OR51E2Q9H255 320 aa17.55■□□□□ 0.4
CLN3-212ENST00000564574 CXXC4Q9H2H0 198 aa17.55■□□□□ 0.4
CLN3-212ENST00000564574 EXOSC4Q9NPD3 245 aaKnown RBP17.55■□□□□ 0.4
CLN3-212ENST00000564574 C14orf119Q9NWQ9 140 aa17.55■□□□□ 0.4
CLN3-212ENST00000564574 TAS2R4Q9NYW5 299 aa17.55■□□□□ 0.4
CLN3-212ENST00000564574 SLC7A11Q9UPY5 501 aa17.55■□□□□ 0.4
CLN3-212ENST00000564574 OR5B21A6NL26 309 aa17.54■□□□□ 0.4
CLN3-212ENST00000564574 H0YL77 283 aa17.54■□□□□ 0.4
CLN3-212ENST00000564574 PRKACBP22694 351 aa17.54■□□□□ 0.4
CLN3-212ENST00000564574 CD200P41217 278 aa17.54■□□□□ 0.4
CLN3-212ENST00000564574 BLMHQ13867 455 aa17.54■□□□□ 0.4
CLN3-212ENST00000564574 UBE2V2Q15819 145 aa17.54■□□□□ 0.4
CLN3-212ENST00000564574 ANKRD13BQ86YJ7 626 aa17.54■□□□□ 0.4
CLN3-212ENST00000564574 CELF2-AS1Q8N7Q2 184 aa17.54■□□□□ 0.4
CLN3-212ENST00000564574 DNAAF1Q8NEP3 725 aa17.54■□□□□ 0.4
CLN3-212ENST00000564574 OR1M1Q8NGA1 313 aa17.54■□□□□ 0.4
CLN3-212ENST00000564574 OR13C9Q8NGT0 318 aa17.54■□□□□ 0.4
CLN3-212ENST00000564574 HPSE2Q8WWQ2 592 aa17.54■□□□□ 0.4
CLN3-212ENST00000564574 SPSB1Q96BD6 273 aa17.54■□□□□ 0.4
CLN3-212ENST00000564574 CHCHD6Q9BRQ6 235 aa17.54■□□□□ 0.4
CLN3-212ENST00000564574 RAB1BQ9H0U4 201 aa17.54■□□□□ 0.4
CLN3-212ENST00000564574 SLITRK2Q9H156 845 aa17.54■□□□□ 0.4
CLN3-212ENST00000564574 CXorf56Q9H5V9 222 aa17.54■□□□□ 0.4
CLN3-212ENST00000564574 TCF7L1Q9HCS4 588 aa17.54■□□□□ 0.4
CLN3-212ENST00000564574 TXNL4BQ9NX01 149 aaKnown RBP17.54■□□□□ 0.4
CLN3-212ENST00000564574 IL19Q9UHD0 177 aa17.54■□□□□ 0.4
CLN3-212ENST00000564574 NBPF19A0A087WUL8 3843 aa17.54■□□□□ 0.4
CLN3-212ENST00000564574 HRNRQ86YZ3 2850 aaPredicted RBP17.54■□□□□ 0.4
CLN3-212ENST00000564574 A0A1W2PPK0 400 aa17.53■□□□□ 0.4
CLN3-212ENST00000564574 TMEM210A6NLX4 147 aa17.53■□□□□ 0.4
CLN3-212ENST00000564574 OVOL3O00110 214 aa17.53■□□□□ 0.4
CLN3-212ENST00000564574 AIREO43918 545 aa17.53■□□□□ 0.4
CLN3-212ENST00000564574 OCMP0CE72 109 aaPredicted RBP17.53■□□□□ 0.4
CLN3-212ENST00000564574 PRF1P14222 555 aa17.53■□□□□ 0.4
CLN3-212ENST00000564574 SRP9P49458 86 aaKnown RBP17.53■□□□□ 0.4
CLN3-212ENST00000564574 FUT6P51993 359 aa17.53■□□□□ 0.4
CLN3-212ENST00000564574 TESK1Q15569 626 aa17.53■□□□□ 0.4
CLN3-212ENST00000564574 CEP78Q5JTW2 689 aa17.53■□□□□ 0.4
CLN3-212ENST00000564574 ASPHD2Q6ICH7 369 aa17.53■□□□□ 0.4
CLN3-212ENST00000564574 OR10AD1Q8NGE0 317 aa17.53■□□□□ 0.4
CLN3-212ENST00000564574 DVL3Q92997 716 aaPredicted RBP17.53■□□□□ 0.4
CLN3-212ENST00000564574 TRMT61AQ96FX7 289 aaKnown RBP17.53■□□□□ 0.4
CLN3-212ENST00000564574 VRK1Q99986 396 aaPredicted RBP17.53■□□□□ 0.4
CLN3-212ENST00000564574 EGLN1Q9GZT9 426 aa17.53■□□□□ 0.4
CLN3-212ENST00000564574 PPP1R3EQ9H7J1 279 aa17.53■□□□□ 0.4
CLN3-212ENST00000564574 F5H5P2 479 aa17.52■□□□□ 0.4
CLN3-212ENST00000564574 ALDOBP05062 364 aa17.52■□□□□ 0.4
CLN3-212ENST00000564574 SRMP19623 302 aa17.52■□□□□ 0.4
CLN3-212ENST00000564574 AZGP1P25311 298 aaKnown RBP17.52■□□□□ 0.4
CLN3-212ENST00000564574 CALRP27797 417 aaKnown RBP17.52■□□□□ 0.4
CLN3-212ENST00000564574 KRTAP10-9P60411 292 aa17.52■□□□□ 0.4
CLN3-212ENST00000564574 GNG3P63215 75 aa17.52■□□□□ 0.4
CLN3-212ENST00000564574 TNFAIP6P98066 277 aaPredicted RBP17.52■□□□□ 0.4
CLN3-212ENST00000564574 FAM27D1Q5T7N8 215 aa17.52■□□□□ 0.4
CLN3-212ENST00000564574 C22orf42Q6IC83 251 aa17.52■□□□□ 0.4
CLN3-212ENST00000564574 SATL1Q86VE3 508 aa17.52■□□□□ 0.4
CLN3-212ENST00000564574 NEU4Q8WWR8 484 aaPredicted RBP17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms