RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 PSKH1P11801 424 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 ZNF14P17017 642 aaPredicted RBP4.32□□□□□ -1.72
VTI1B-202ENST00000553619 RAB3AP20336 220 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 RAB3BP20337 219 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 CCL1P22362 96 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 NR4A1P22736 598 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 GNLYP22749 145 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 GCH1P30793 250 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 S100A5P33763 92 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 THBS4P35443 961 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 KIR3DL2P43630 455 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 IDH3GP51553 393 aaPredicted RBP4.32□□□□□ -1.72
VTI1B-202ENST00000553619 UCP2P55851 309 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 RPS23P62266 143 aaKnown RBP4.32□□□□□ -1.72
VTI1B-202ENST00000553619 PPP3R1P63098 170 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 SORDQ00796 357 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 MZT1Q08AG7 82 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 CNN3Q15417 329 aaKnown RBP4.32□□□□□ -1.72
VTI1B-202ENST00000553619 FAM189A2Q15884 450 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 ODF4Q2M2E3 257 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 CNPY1Q3B7I2 92 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 TMEM91Q6ZNR0 172 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 COLCA1Q6ZS62 124 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 LINC00299Q6ZSB3 139 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 SLC16A12Q6ZSM3 486 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 Q6ZSR3 168 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 MRPL21Q7Z2W9 205 aaKnown RBP4.32□□□□□ -1.72
VTI1B-202ENST00000553619 NAA40Q86UY6 237 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 LIX1LQ8IVB5 337 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 RDH10Q8IZV5 341 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 PARP16Q8N5Y8 322 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 RELL2Q8NC24 303 aaPredicted RBP4.32□□□□□ -1.72
VTI1B-202ENST00000553619 SEMA6DQ8NFY4 1073 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 OR8B12Q8NGG6 310 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 OR51E1Q8TCB6 317 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 ACOT12Q8WYK0 555 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 CFHR4Q92496 578 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 HTRA1Q92743 480 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 RPL3LQ92901 407 aaKnown RBP4.32□□□□□ -1.72
VTI1B-202ENST00000553619 SGK3Q96BR1 496 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 S100PBPQ96BU1 408 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 FGGYQ96C11 551 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 REEP6Q96HR9 211 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 ZNF75AQ96N20 296 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 CENPOQ9BU64 300 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 NAA50Q9GZZ1 169 aaKnown RBP4.32□□□□□ -1.72
VTI1B-202ENST00000553619 SLC22A4Q9H015 551 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 MMP27Q9H306 513 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 ESRP2Q9H6T0 727 aaKnown RBP4.32□□□□□ -1.72
VTI1B-202ENST00000553619 ABCB9Q9NP78 766 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 NOX4Q9NPH5 578 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 PCDHB16Q9NRJ7 776 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 PTTG2Q9NZH5 202 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 KCNN3Q9UGI6 736 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 PAIP2BQ9ULR5 123 aaKnown RBP4.32□□□□□ -1.72
VTI1B-202ENST00000553619 SLC7A11Q9UPY5 501 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 NOP16Q9Y3C1 178 aaKnown RBP4.32□□□□□ -1.72
VTI1B-202ENST00000553619 A3GALT2U3KPV4 340 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 V9GY05 133 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 V9GYS6 101 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 COL6A6A6NMZ7 2263 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 A0A075B6Q4 140 aa4.31□□□□□ -1.72
VTI1B-202ENST00000553619 TRBV5-7A0A0A0MS05 114 aa4.31□□□□□ -1.72
VTI1B-202ENST00000553619 ZNF816-ZNF321PA0A0X1KG74 233 aa4.31□□□□□ -1.72
VTI1B-202ENST00000553619 A0A1B0GTI1 187 aa4.31□□□□□ -1.72
VTI1B-202ENST00000553619 A0A1W2PR80 420 aa4.31□□□□□ -1.72
VTI1B-202ENST00000553619 ANKRD61A6NGH8 418 aa4.31□□□□□ -1.72
VTI1B-202ENST00000553619 ANKRD30BLA7E2S9 258 aa4.31□□□□□ -1.72
VTI1B-202ENST00000553619 M0R1B8 84 aa4.31□□□□□ -1.72
VTI1B-202ENST00000553619 AGFG2O95081 481 aa4.31□□□□□ -1.72
VTI1B-202ENST00000553619 IGLV3-1P01715 115 aa4.31□□□□□ -1.72
VTI1B-202ENST00000553619 MAS1P04201 325 aa4.31□□□□□ -1.72
VTI1B-202ENST00000553619 ALDOBP05062 364 aa4.31□□□□□ -1.72
VTI1B-202ENST00000553619 SLC2A1P11166 492 aa4.31□□□□□ -1.72
VTI1B-202ENST00000553619 ZNF35P13682 527 aa4.31□□□□□ -1.72
VTI1B-202ENST00000553619 PRKACBP22694 351 aa4.31□□□□□ -1.72
VTI1B-202ENST00000553619 BDKRB2P30411 391 aa4.31□□□□□ -1.72
VTI1B-202ENST00000553619 SDC2P34741 201 aa4.31□□□□□ -1.72
VTI1B-202ENST00000553619 SOX2P48431 317 aa4.31□□□□□ -1.72
VTI1B-202ENST00000553619 ZNF83P51522 516 aa4.31□□□□□ -1.72
VTI1B-202ENST00000553619 ATP1B3P54709 279 aa4.31□□□□□ -1.72
VTI1B-202ENST00000553619 PPP1CBP62140 327 aa4.31□□□□□ -1.72
VTI1B-202ENST00000553619 NCS1P62166 190 aa4.31□□□□□ -1.72
VTI1B-202ENST00000553619 RPS11P62280 158 aaKnown RBP eCLIP4.31□□□□□ -1.72
VTI1B-202ENST00000553619 ADORA2A-AS1P86434 159 aa4.31□□□□□ -1.72
VTI1B-202ENST00000553619 NAAAQ02083 359 aa4.31□□□□□ -1.72
VTI1B-202ENST00000553619 MFGE8Q08431 387 aaPredicted RBP4.31□□□□□ -1.72
VTI1B-202ENST00000553619 SPCS2Q15005 226 aa4.31□□□□□ -1.72
VTI1B-202ENST00000553619 TSC22D1Q15714 1073 aa4.31□□□□□ -1.72
VTI1B-202ENST00000553619 TAB1Q15750 504 aa4.31□□□□□ -1.72
VTI1B-202ENST00000553619 IGFBP7Q16270 282 aa4.31□□□□□ -1.72
VTI1B-202ENST00000553619 GFOD2Q3B7J2 385 aa4.31□□□□□ -1.72
VTI1B-202ENST00000553619 ZNF404Q494X3 552 aa4.31□□□□□ -1.72
VTI1B-202ENST00000553619 TM4SF20Q53R12 229 aa4.31□□□□□ -1.72
VTI1B-202ENST00000553619 CLVS2Q5SYC1 327 aa4.31□□□□□ -1.72
VTI1B-202ENST00000553619 RGS7BPQ6MZT1 257 aaPredicted RBP4.31□□□□□ -1.72
VTI1B-202ENST00000553619 FBXW12Q6X9E4 464 aa4.31□□□□□ -1.72
VTI1B-202ENST00000553619 UTS2BQ765I0 119 aa4.31□□□□□ -1.72
VTI1B-202ENST00000553619 PRSS45Q7RTY3 260 aa4.31□□□□□ -1.72
VTI1B-202ENST00000553619 NKAIN3Q8N8D7 197 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms