RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 ZNF629Q9UEG4 869 aaPredicted RBP9.67□□□□□ -0.86
CUX1-212ENST00000547394 A0A1W2PR80 420 aa9.67□□□□□ -0.86
CUX1-212ENST00000547394 TMEM82A0PJX8 343 aa9.67□□□□□ -0.86
CUX1-212ENST00000547394 OR2AT4A6NND4 320 aa9.67□□□□□ -0.86
CUX1-212ENST00000547394 C21orf140B9A014 251 aa9.67□□□□□ -0.86
CUX1-212ENST00000547394 HTR3BO95264 441 aa9.67□□□□□ -0.86
CUX1-212ENST00000547394 AP2S1P53680 142 aaPredicted RBP9.67□□□□□ -0.86
CUX1-212ENST00000547394 ARF1P84077 181 aaKnown RBP9.67□□□□□ -0.86
CUX1-212ENST00000547394 ZNF92Q03936 586 aa9.67□□□□□ -0.86
CUX1-212ENST00000547394 LRRC37A5PQ49AS3 106 aa9.67□□□□□ -0.86
CUX1-212ENST00000547394 PABPC1L2AQ5JQF8 200 aa9.67□□□□□ -0.86
CUX1-212ENST00000547394 ATPAF1Q5TC12 328 aaPredicted RBP9.67□□□□□ -0.86
CUX1-212ENST00000547394 ABLIM2Q6H8Q1 611 aa9.67□□□□□ -0.86
CUX1-212ENST00000547394 CASTOR1Q8WTX7 329 aa9.67□□□□□ -0.86
CUX1-212ENST00000547394 C15orf40Q8WUR7 153 aa9.67□□□□□ -0.86
CUX1-212ENST00000547394 SPTSSAQ969W0 71 aa9.67□□□□□ -0.86
CUX1-212ENST00000547394 FOXRED1Q96CU9 486 aaPredicted RBP9.67□□□□□ -0.86
CUX1-212ENST00000547394 RAB3CQ96E17 227 aa9.67□□□□□ -0.86
CUX1-212ENST00000547394 VSIG4Q9Y279 399 aa9.67□□□□□ -0.86
CUX1-212ENST00000547394 ACACAQ13085 2346 aa9.66□□□□□ -0.86
CUX1-212ENST00000547394 IGKV1-27A0A075B6S5 117 aa9.66□□□□□ -0.86
CUX1-212ENST00000547394 FAM221AA4D161 298 aa9.66□□□□□ -0.86
CUX1-212ENST00000547394 KCNAB3O43448 404 aa9.66□□□□□ -0.86
CUX1-212ENST00000547394 CFDP00746 253 aaPredicted RBP9.66□□□□□ -0.86
CUX1-212ENST00000547394 FTH1P19P0C7X4 201 aa9.66□□□□□ -0.86
CUX1-212ENST00000547394 TMEM225BP0DP42 221 aa9.66□□□□□ -0.86
CUX1-212ENST00000547394 CD37P11049 281 aa9.66□□□□□ -0.86
CUX1-212ENST00000547394 PTGFRP43088 359 aa9.66□□□□□ -0.86
CUX1-212ENST00000547394 GNG2P59768 71 aa9.66□□□□□ -0.86
CUX1-212ENST00000547394 ARG2P78540 354 aa9.66□□□□□ -0.86
CUX1-212ENST00000547394 RNASE10Q5GAN6 216 aaKnown RBP9.66□□□□□ -0.86
CUX1-212ENST00000547394 RHOUQ7L0Q8 258 aa9.66□□□□□ -0.86
CUX1-212ENST00000547394 C6orf201Q7Z4U5 140 aa9.66□□□□□ -0.86
CUX1-212ENST00000547394 ADAD2Q8NCV1 583 aaKnown RBP9.66□□□□□ -0.86
CUX1-212ENST00000547394 BHLHE23Q8NDY6 225 aa9.66□□□□□ -0.86
CUX1-212ENST00000547394 CDC6Q99741 560 aa9.66□□□□□ -0.86
CUX1-212ENST00000547394 UQCC2Q9BRT2 126 aa9.66□□□□□ -0.86
CUX1-212ENST00000547394 SF3B5Q9BWJ5 86 aaKnown RBP9.66□□□□□ -0.86
CUX1-212ENST00000547394 TAS2R8Q9NYW2 309 aa9.66□□□□□ -0.86
CUX1-212ENST00000547394 MPC2O95563 127 aa9.66□□□□□ -0.86
CUX1-212ENST00000547394 MGMTP16455 207 aa9.66□□□□□ -0.86
CUX1-212ENST00000547394 AKR1C4P17516 323 aa9.66□□□□□ -0.86
CUX1-212ENST00000547394 CRYGSP22914 178 aa9.66□□□□□ -0.86
CUX1-212ENST00000547394 RAG2P55895 527 aa9.66□□□□□ -0.86
CUX1-212ENST00000547394 MTCP1P56278 107 aa9.66□□□□□ -0.86
CUX1-212ENST00000547394 ARFRP1Q13795 201 aa9.66□□□□□ -0.86
CUX1-212ENST00000547394 HLXQ14774 488 aaPredicted RBP9.66□□□□□ -0.86
CUX1-212ENST00000547394 NUFIP2Q7Z417 695 aaKnown RBP9.66□□□□□ -0.86
CUX1-212ENST00000547394 CDH24Q86UP0 819 aa9.66□□□□□ -0.86
CUX1-212ENST00000547394 CPNE4Q96A23 557 aaPredicted RBP9.66□□□□□ -0.86
CUX1-212ENST00000547394 SEC22AQ96IW7 307 aa9.66□□□□□ -0.86
CUX1-212ENST00000547394 OR2H1Q9GZK4 316 aa9.66□□□□□ -0.86
CUX1-212ENST00000547394 LDAHQ9H6V9 325 aa9.66□□□□□ -0.86
CUX1-212ENST00000547394 ZNF224Q9NZL3 707 aa9.66□□□□□ -0.86
CUX1-212ENST00000547394 FXYD6-FXYD2A0A087WZ82 144 aa9.65□□□□□ -0.86
CUX1-212ENST00000547394 CYTIPO60759 359 aa9.65□□□□□ -0.86
CUX1-212ENST00000547394 SP1P08047 785 aa9.65□□□□□ -0.86
CUX1-212ENST00000547394 OR4E1P0C645 316 aa9.65□□□□□ -0.86
CUX1-212ENST00000547394 CD79AP11912 226 aa9.65□□□□□ -0.86
CUX1-212ENST00000547394 NR2C1P13056 603 aa9.65□□□□□ -0.86
CUX1-212ENST00000547394 CCL1P22362 96 aa9.65□□□□□ -0.86
CUX1-212ENST00000547394 BLVRBP30043 206 aaPredicted RBP9.65□□□□□ -0.86
CUX1-212ENST00000547394 OTX1P32242 354 aaPredicted RBP9.65□□□□□ -0.86
CUX1-212ENST00000547394 AIMP2Q13155 320 aaKnown RBP9.65□□□□□ -0.86
CUX1-212ENST00000547394 FAM209AQ5JX71 171 aa9.65□□□□□ -0.86
CUX1-212ENST00000547394 PGAP1Q75T13 922 aa9.65□□□□□ -0.86
CUX1-212ENST00000547394 ELMOD3Q96FG2 381 aa9.65□□□□□ -0.86
CUX1-212ENST00000547394 FXYD6Q9H0Q3 95 aa9.65□□□□□ -0.86
CUX1-212ENST00000547394 OR10A2Q9H208 303 aa9.65□□□□□ -0.86
CUX1-212ENST00000547394 FN3KRPQ9HA64 309 aa9.65□□□□□ -0.86
CUX1-212ENST00000547394 RABL2AQ9UBK7 228 aaPredicted RBP9.65□□□□□ -0.86
CUX1-212ENST00000547394 RABL2BQ9UNT1 228 aa9.65□□□□□ -0.86
CUX1-212ENST00000547394 IGHV3-64DA0A0J9YX35 117 aa9.65□□□□□ -0.86
CUX1-212ENST00000547394 FAM25EA8MYX2 175 aa9.65□□□□□ -0.86
CUX1-212ENST00000547394 ARPC5O15511 151 aa9.65□□□□□ -0.86
CUX1-212ENST00000547394 TMEM127O75204 238 aa9.65□□□□□ -0.86
CUX1-212ENST00000547394 RGS11O94810 467 aa9.65□□□□□ -0.86
CUX1-212ENST00000547394 ERCC1P07992 297 aaPredicted RBP9.65□□□□□ -0.86
CUX1-212ENST00000547394 VAMP1P23763 118 aa9.65□□□□□ -0.86
CUX1-212ENST00000547394 NPY4RP50391 375 aa9.65□□□□□ -0.86
CUX1-212ENST00000547394 ARPC4P59998 168 aa9.65□□□□□ -0.86
CUX1-212ENST00000547394 HIST1H3AP68431 136 aa9.65□□□□□ -0.86
CUX1-212ENST00000547394 ATXN7L3Q14CW9 347 aaPredicted RBP9.65□□□□□ -0.86
CUX1-212ENST00000547394 TAF9Q16594 264 aa9.65□□□□□ -0.86
CUX1-212ENST00000547394 MICBQ29980 383 aa9.65□□□□□ -0.86
CUX1-212ENST00000547394 HIST2H3PS2Q5TEC6 136 aa9.65□□□□□ -0.86
CUX1-212ENST00000547394 FOXL2NBQ6ZUU3 175 aa9.65□□□□□ -0.86
CUX1-212ENST00000547394 HIST2H3AQ71DI3 136 aa9.65□□□□□ -0.86
CUX1-212ENST00000547394 LIX1LQ8IVB5 337 aa9.65□□□□□ -0.86
CUX1-212ENST00000547394 GCNT2Q8N0V5 402 aa9.65□□□□□ -0.86
CUX1-212ENST00000547394 TMEM229BQ8NBD8 167 aa9.65□□□□□ -0.86
CUX1-212ENST00000547394 PIGCQ92535 297 aa9.65□□□□□ -0.86
CUX1-212ENST00000547394 CST11Q9H112 138 aa9.65□□□□□ -0.86
CUX1-212ENST00000547394 GPN1Q9HCN4 374 aaPredicted RBP9.65□□□□□ -0.86
CUX1-212ENST00000547394 B4GALT7Q9UBV7 327 aa9.65□□□□□ -0.86
CUX1-212ENST00000547394 PRSS50Q9UI38 385 aa9.65□□□□□ -0.86
CUX1-212ENST00000547394 SCP2D1Q9UJQ7 156 aa9.65□□□□□ -0.86
CUX1-212ENST00000547394 UBE2QL1A1L167 161 aa9.65□□□□□ -0.87
CUX1-212ENST00000547394 TEX46H3BTG2 121 aa9.65□□□□□ -0.87
CUX1-212ENST00000547394 PRAF2O60831 178 aa9.65□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms