RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 KLHL2O95198 593 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 S100A6P06703 90 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 CD70P32970 193 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 PRKCDQ05655 676 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 FLOT2Q14254 428 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 PLEKHG7Q6ZR37 379 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 FUNDC1Q8IVP5 155 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 OR6X1Q8NH79 312 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 RNASEH2CQ8TDP1 164 aaKnown RBP3.31□□□□□ -1.88
VPS13A-212ENST00000493341 OR5P2Q8WZ92 322 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 CCDC127Q96BQ5 260 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 HECW2Q9P2P5 1572 aa3.3□□□□□ -1.88
VPS13A-212ENST00000493341 ABCB11O95342 1321 aa3.3□□□□□ -1.88
VPS13A-212ENST00000493341 MYO3BQ8WXR4 1341 aa3.3□□□□□ -1.88
VPS13A-212ENST00000493341 CLIP1P30622 1438 aa3.3□□□□□ -1.88
VPS13A-212ENST00000493341 MAP3K1Q13233 1512 aa3.3□□□□□ -1.88
VPS13A-212ENST00000493341 H0Y9J4 135 aa3.3□□□□□ -1.88
VPS13A-212ENST00000493341 PLPP3O14495 311 aa3.3□□□□□ -1.88
VPS13A-212ENST00000493341 RAD51BO15315 384 aa3.3□□□□□ -1.88
VPS13A-212ENST00000493341 CD5LO43866 347 aa3.3□□□□□ -1.88
VPS13A-212ENST00000493341 IGLV2-23P01705 113 aa3.3□□□□□ -1.88
VPS13A-212ENST00000493341 HLA-DPB1P04440 258 aa3.3□□□□□ -1.88
VPS13A-212ENST00000493341 CXCL5P42830 114 aa3.3□□□□□ -1.88
VPS13A-212ENST00000493341 TUFMP49411 452 aaKnown RBP3.3□□□□□ -1.88
VPS13A-212ENST00000493341 MTPNP58546 118 aa3.3□□□□□ -1.88
VPS13A-212ENST00000493341 MYL6P60660 151 aa3.3□□□□□ -1.88
VPS13A-212ENST00000493341 TRAM1Q15629 374 aa3.3□□□□□ -1.88
VPS13A-212ENST00000493341 RSPO1Q2MKA7 263 aaPredicted RBP3.3□□□□□ -1.88
VPS13A-212ENST00000493341 TCEAL5Q5H9L2 206 aa3.3□□□□□ -1.88
VPS13A-212ENST00000493341 FBXW9Q5XUX1 488 aa3.3□□□□□ -1.88
VPS13A-212ENST00000493341 HBMQ6B0K9 141 aa3.3□□□□□ -1.88
VPS13A-212ENST00000493341 SSX7Q7RTT5 188 aa3.3□□□□□ -1.88
VPS13A-212ENST00000493341 TMEM25Q86YD3 366 aa3.3□□□□□ -1.88
VPS13A-212ENST00000493341 ATP6V1C2Q8NEY4 427 aa3.3□□□□□ -1.88
VPS13A-212ENST00000493341 TMEM158Q8WZ71 300 aa3.3□□□□□ -1.88
VPS13A-212ENST00000493341 TCEAL3Q969E4 200 aa3.3□□□□□ -1.88
VPS13A-212ENST00000493341 FAM19A4Q96LR4 140 aa3.3□□□□□ -1.88
VPS13A-212ENST00000493341 CDC42EP4Q9H3Q1 356 aaKnown RBP3.3□□□□□ -1.88
VPS13A-212ENST00000493341 SLC7A10Q9NS82 523 aa3.3□□□□□ -1.88
VPS13A-212ENST00000493341 TREX1Q9NSU2 369 aa3.3□□□□□ -1.88
VPS13A-212ENST00000493341 NLE1Q9NVX2 485 aaPredicted RBP3.3□□□□□ -1.88
VPS13A-212ENST00000493341 RBAKQ9NYW8 714 aaPredicted RBP3.3□□□□□ -1.88
VPS13A-212ENST00000493341 ZNF225Q9UK10 706 aa3.3□□□□□ -1.88
VPS13A-212ENST00000493341 SIGLEC9Q9Y336 463 aa3.3□□□□□ -1.88
VPS13A-212ENST00000493341 SNX24Q9Y343 169 aa3.3□□□□□ -1.88
VPS13A-212ENST00000493341 KIDINS220Q9ULH0 1771 aa3.3□□□□□ -1.88
VPS13A-212ENST00000493341 AGLP35573 1532 aa3.3□□□□□ -1.88
VPS13A-212ENST00000493341 EHBP1L1Q8N3D4 1523 aa3.3□□□□□ -1.88
VPS13A-212ENST00000493341 ARHGEF12Q9NZN5 1544 aa3.3□□□□□ -1.88
VPS13A-212ENST00000493341 MADDQ8WXG6 1647 aa3.3□□□□□ -1.88
VPS13A-212ENST00000493341 IGKV1-8A0A0C4DH67 115 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 GOLGA8IPA6NC78 632 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 CLDN34H7C241 214 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 LAD1O00515 517 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 RAD1O60671 282 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 ADAP1O75689 374 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 UPK1BO75841 260 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 SEMA3DO95025 777 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 CD8AP01732 235 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 IGHV4-34P06331 123 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 RCC1P18754 421 aaPredicted RBP3.29□□□□□ -1.88
VPS13A-212ENST00000493341 KLK2P20151 261 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 CCNE1P24864 410 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 NUDT1P36639 197 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 UBE2IP63279 158 aaKnown RBP3.29□□□□□ -1.88
VPS13A-212ENST00000493341 KRTAP1-1Q07627 177 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 CYP24A1Q07973 514 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 DAZ2Q13117 558 aaKnown RBP3.29□□□□□ -1.88
VPS13A-212ENST00000493341 RAB31Q13636 194 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 SLC25A30Q5SVS4 291 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 LYPD2Q6UXB3 125 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 Q6ZT83 130 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 NECAP1Q8NC96 275 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 TIMM17AQ99595 171 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 RBBP8Q99708 897 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 DCUN1D5Q9BTE7 237 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 SLC38A1Q9H2H9 487 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 LINC00597Q9H2U6 94 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 DAZ3Q9NR90 486 aaKnown RBP3.29□□□□□ -1.88
VPS13A-212ENST00000493341 C1orf109Q9NX04 203 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 VAX2Q9UIW0 290 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 SLC7A11Q9UPY5 501 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 ZNF518AQ6AHZ1 1483 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 MLH3Q9UHC1 1453 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 SAMD9LQ8IVG5 1584 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 INO80Q9ULG1 1556 aaPredicted RBP3.29□□□□□ -1.88
VPS13A-212ENST00000493341 DIP2CQ9Y2E4 1556 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 MROH2AA6NES4 1674 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 BRCA1P38398 1863 aaKnown RBP3.29□□□□□ -1.88
VPS13A-212ENST00000493341 ABCA6Q8N139 1617 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 ASTN1O14525 1302 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 USP42Q9H9J4 1324 aaKnown RBP3.29□□□□□ -1.88
VPS13A-212ENST00000493341 TIAM1Q13009 1591 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 TMEM213A2RRL7 107 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 ERI2A8K979 691 aaKnown RBP3.29□□□□□ -1.88
VPS13A-212ENST00000493341 TNFRSF11BO00300 401 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 SHOX2O60902 331 aaPredicted RBP3.29□□□□□ -1.88
VPS13A-212ENST00000493341 PSIP1O75475 530 aaKnown RBP3.29□□□□□ -1.88
VPS13A-212ENST00000493341 CRTAPO75718 401 aaPredicted RBP3.29□□□□□ -1.88
VPS13A-212ENST00000493341 GLSO94925 669 aaPredicted RBP3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms