RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 SEMG1P04279 462 aa6.04□□□□□ -1.44
USP54-208ENST00000461520 FABP3P05413 133 aa6.04□□□□□ -1.44
USP54-208ENST00000461520 HSD17B1P14061 328 aa6.04□□□□□ -1.44
USP54-208ENST00000461520 RPS2P15880 293 aaKnown RBP6.04□□□□□ -1.44
USP54-208ENST00000461520 PRTN3P24158 256 aa6.04□□□□□ -1.44
USP54-208ENST00000461520 RBMXP38159 391 aaKnown RBP6.04□□□□□ -1.44
USP54-208ENST00000461520 GSSP48637 474 aa6.04□□□□□ -1.44
USP54-208ENST00000461520 GNB2P62879 340 aa6.04□□□□□ -1.44
USP54-208ENST00000461520 SPIBQ01892 262 aa6.04□□□□□ -1.44
USP54-208ENST00000461520 PAX2Q02962 417 aa6.04□□□□□ -1.44
USP54-208ENST00000461520 PAX8Q06710 450 aa6.04□□□□□ -1.44
USP54-208ENST00000461520 TSPAN31Q12999 210 aa6.04□□□□□ -1.44
USP54-208ENST00000461520 CNN3Q15417 329 aaKnown RBP6.04□□□□□ -1.44
USP54-208ENST00000461520 RSPO1Q2MKA7 263 aaPredicted RBP6.04□□□□□ -1.44
USP54-208ENST00000461520 KLF17Q5JT82 389 aaPredicted RBP6.04□□□□□ -1.44
USP54-208ENST00000461520 CORO6Q6QEF8 472 aa6.04□□□□□ -1.44
USP54-208ENST00000461520 BTNL3Q6UXE8 466 aa6.04□□□□□ -1.44
USP54-208ENST00000461520 LRRN1Q6UXK5 716 aa6.04□□□□□ -1.44
USP54-208ENST00000461520 C9orf139Q6ZV77 190 aa6.04□□□□□ -1.44
USP54-208ENST00000461520 KLBQ86Z14 1044 aa6.04□□□□□ -1.44
USP54-208ENST00000461520 RNF148Q8N7C7 305 aa6.04□□□□□ -1.44
USP54-208ENST00000461520 SIGLECL1Q8N7X8 197 aa6.04□□□□□ -1.44
USP54-208ENST00000461520 OR2AJ1Q8NGZ0 328 aa6.04□□□□□ -1.44
USP54-208ENST00000461520 OR4K13Q8NH42 304 aa6.04□□□□□ -1.44
USP54-208ENST00000461520 ZNF420Q8TAQ5 688 aaPredicted RBP6.04□□□□□ -1.44
USP54-208ENST00000461520 RAB40AQ8WXH6 277 aa6.04□□□□□ -1.44
USP54-208ENST00000461520 PLEKHA8Q96JA3 519 aa6.04□□□□□ -1.44
USP54-208ENST00000461520 NSMCE2Q96MF7 247 aa6.04□□□□□ -1.44
USP54-208ENST00000461520 PITX2Q99697 317 aa6.04□□□□□ -1.44
USP54-208ENST00000461520 ATF6BQ99941 703 aa6.04□□□□□ -1.44
USP54-208ENST00000461520 TMEM246Q9BRR3 403 aa6.04□□□□□ -1.44
USP54-208ENST00000461520 IFT27Q9BW83 186 aa6.04□□□□□ -1.44
USP54-208ENST00000461520 RPRD1BQ9NQG5 326 aaKnown RBP6.04□□□□□ -1.44
USP54-208ENST00000461520 ZNF69Q9UC07 566 aa6.04□□□□□ -1.44
USP54-208ENST00000461520 CYB5R1Q9UHQ9 305 aa6.04□□□□□ -1.44
USP54-208ENST00000461520 KCNG2Q9UJ96 466 aa6.04□□□□□ -1.44
USP54-208ENST00000461520 TMCC3Q9ULS5 477 aa6.04□□□□□ -1.44
USP54-208ENST00000461520 IGHV2-70DA0A0C4DH43 119 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 KIR2DS1A0A191URI9 304 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 OR6C68A6NDL8 312 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 F5H5P2 479 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 CLDN34H7C241 214 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 ATP8B1O43520 1251 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 SPRY2O43597 315 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 SNX3O60493 162 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 KRT36O76013 467 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 HLA-DQA2P01906 255 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 LCATP04180 440 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 ACSM4P0C7M7 580 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 IRF2P14316 349 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 ZNF823P16415 610 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 RRM2P31350 389 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 CD80P33681 288 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 GGT2P36268 569 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 CD200P41217 278 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 MTNR1AP48039 350 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 TRAP1Q12931 704 aaKnown RBP6.03□□□□□ -1.44
USP54-208ENST00000461520 MAB21L1Q13394 359 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 GK2Q14410 553 aaPredicted RBP6.03□□□□□ -1.44
USP54-208ENST00000461520 ZNF260Q3ZCT1 412 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 ZNF404Q494X3 552 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 SAMD4BQ5PRF9 694 aaKnown RBP6.03□□□□□ -1.44
USP54-208ENST00000461520 RPL13AP3Q6NVV1 102 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 ZNF620Q6ZNG0 422 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 CFAP77Q6ZQR2 320 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 PGAP1Q75T13 922 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 ZSCAN2Q7Z7L9 614 aaPredicted RBP6.03□□□□□ -1.44
USP54-208ENST00000461520 MOGAT3Q86VF5 341 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 LINC00346Q8IVM7 164 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 PGAM4Q8N0Y7 254 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 PARP8Q8N3A8 854 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 LINC00471Q8N535 108 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 BHLHE23Q8NDY6 225 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 SDR9C7Q8NEX9 313 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 OR8B3Q8NGG8 313 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 OR52E2Q8NGJ4 325 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 GNPDA2Q8TDQ7 276 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 SPTSSAQ969W0 71 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 SLC25A28Q96A46 364 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 UPRTQ96BW1 309 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 OR8B2Q96RD0 313 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 SLC22A4Q9H015 551 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 NSRP1Q9H0G5 558 aaKnown RBP6.03□□□□□ -1.44
USP54-208ENST00000461520 WDR76Q9H967 626 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 IL1RAPQ9NPH3 570 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 PNRC2Q9NPJ4 139 aaKnown RBP6.03□□□□□ -1.44
USP54-208ENST00000461520 CD300AQ9UGN4 299 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 NOP16Q9Y3C1 178 aaKnown RBP6.03□□□□□ -1.44
USP54-208ENST00000461520 V9GYQ6 96 aa6.03□□□□□ -1.44
USP54-208ENST00000461520 TRRAPQ9Y4A5 3859 aa6.02□□□□□ -1.45
USP54-208ENST00000461520 LOC102723971A0A1B0GUV8 181 aa6.02□□□□□ -1.45
USP54-208ENST00000461520 M0R135 149 aa6.02□□□□□ -1.45
USP54-208ENST00000461520 PHYHO14832 338 aa6.02□□□□□ -1.45
USP54-208ENST00000461520 ARPC2O15144 300 aa6.02□□□□□ -1.45
USP54-208ENST00000461520 HLA-DPB1P04440 258 aa6.02□□□□□ -1.45
USP54-208ENST00000461520 OTX1P32242 354 aaPredicted RBP6.02□□□□□ -1.45
USP54-208ENST00000461520 PMELP40967 661 aa6.02□□□□□ -1.45
USP54-208ENST00000461520 PITPNBP48739 271 aa6.02□□□□□ -1.45
USP54-208ENST00000461520 NPY4RP50391 375 aa6.02□□□□□ -1.45
USP54-208ENST00000461520 RAD23AP54725 363 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms