RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 TIAL1Q01085 375 aaKnown RBP eCLIP15.42■□□□□ 0.06
PHRF1-202ENST00000413872 CHCHD2P9Q5T1J5 151 aaPredicted RBP15.42■□□□□ 0.06
PHRF1-202ENST00000413872 OTPQ5XKR4 325 aa15.42■□□□□ 0.06
PHRF1-202ENST00000413872 SLC38A6Q8IZM9 456 aa15.42■□□□□ 0.06
PHRF1-202ENST00000413872 C17orf78Q8N4C9 275 aa15.42■□□□□ 0.06
PHRF1-202ENST00000413872 MBD1Q9UIS9 605 aaPredicted RBP15.42■□□□□ 0.06
PHRF1-202ENST00000413872 MPC1Q9Y5U8 109 aa15.42■□□□□ 0.06
PHRF1-202ENST00000413872 RAB27BO00194 218 aa15.42■□□□□ 0.06
PHRF1-202ENST00000413872 CD3DP04234 171 aa15.42■□□□□ 0.06
PHRF1-202ENST00000413872 SCGB2A2Q13296 93 aa15.42■□□□□ 0.06
PHRF1-202ENST00000413872 NHLRC1Q6VVB1 395 aa15.42■□□□□ 0.06
PHRF1-202ENST00000413872 IL34Q6ZMJ4 242 aa15.42■□□□□ 0.06
PHRF1-202ENST00000413872 Q6ZNX1 250 aa15.42■□□□□ 0.06
PHRF1-202ENST00000413872 ATG4DQ86TL0 474 aaPredicted RBP15.42■□□□□ 0.06
PHRF1-202ENST00000413872 RAB1BQ9H0U4 201 aa15.42■□□□□ 0.06
PHRF1-202ENST00000413872 PCYT1BQ9Y5K3 369 aaPredicted RBP15.42■□□□□ 0.06
PHRF1-202ENST00000413872 SPRY1O43609 319 aaPredicted RBP15.41■□□□□ 0.06
PHRF1-202ENST00000413872 CD3EP07766 207 aa15.41■□□□□ 0.06
PHRF1-202ENST00000413872 KCNJ3P48549 501 aa15.41■□□□□ 0.06
PHRF1-202ENST00000413872 OR2G3Q8NGZ4 309 aa15.41■□□□□ 0.06
PHRF1-202ENST00000413872 RTN4IP1Q8WWV3 396 aaPredicted RBP15.41■□□□□ 0.06
PHRF1-202ENST00000413872 CYSLTR2Q9NS75 346 aa15.41■□□□□ 0.06
PHRF1-202ENST00000413872 RNF24Q9Y225 148 aa15.41■□□□□ 0.06
PHRF1-202ENST00000413872 STRAPQ9Y3F4 350 aaKnown RBP15.41■□□□□ 0.06
PHRF1-202ENST00000413872 NRXN2Q9P2S2 1712 aa15.41■□□□□ 0.06
PHRF1-202ENST00000413872 TRIP11Q15643 1979 aa15.41■□□□□ 0.06
PHRF1-202ENST00000413872 RPL11P62913 178 aaKnown RBP15.41■□□□□ 0.06
PHRF1-202ENST00000413872 LIPT2A6NK58 231 aa15.41■□□□□ 0.06
PHRF1-202ENST00000413872 E5RGE8 158 aa15.41■□□□□ 0.06
PHRF1-202ENST00000413872 IGHA2P01877 340 aa15.41■□□□□ 0.06
PHRF1-202ENST00000413872 GPNMBQ14956 572 aa15.41■□□□□ 0.06
PHRF1-202ENST00000413872 SSX9Q7RTT3 188 aa15.41■□□□□ 0.06
PHRF1-202ENST00000413872 PTPMT1Q8WUK0 201 aaPredicted RBP15.41■□□□□ 0.06
PHRF1-202ENST00000413872 TAF9BQ9HBM6 251 aa15.41■□□□□ 0.06
PHRF1-202ENST00000413872 NSG2Q9Y328 171 aa15.41■□□□□ 0.06
PHRF1-202ENST00000413872 ASCC3Q8N3C0 2202 aaKnown RBP15.41■□□□□ 0.06
PHRF1-202ENST00000413872 A0A1B0GUH1 482 aa15.41■□□□□ 0.06
PHRF1-202ENST00000413872 SIX6O95475 246 aa15.41■□□□□ 0.06
PHRF1-202ENST00000413872 PPP1CBP62140 327 aa15.41■□□□□ 0.06
PHRF1-202ENST00000413872 KISS1Q15726 138 aa15.41■□□□□ 0.06
PHRF1-202ENST00000413872 PXT1Q8NFP0 134 aa15.41■□□□□ 0.06
PHRF1-202ENST00000413872 NIPSNAP3BQ9BS92 247 aa15.41■□□□□ 0.06
PHRF1-202ENST00000413872 PSMB6P28072 239 aa15.4■□□□□ 0.06
PHRF1-202ENST00000413872 MMP15P51511 669 aa15.4■□□□□ 0.06
PHRF1-202ENST00000413872 PRDX4Q13162 271 aa15.4■□□□□ 0.06
PHRF1-202ENST00000413872 THNSL2Q86YJ6 484 aa15.4■□□□□ 0.06
PHRF1-202ENST00000413872 OR5D13Q8NGL4 314 aa15.4■□□□□ 0.06
PHRF1-202ENST00000413872 GPR31O00270 319 aa15.4■□□□□ 0.06
PHRF1-202ENST00000413872 YIF1AO95070 293 aa15.4■□□□□ 0.06
PHRF1-202ENST00000413872 LY86O95711 162 aa15.4■□□□□ 0.06
PHRF1-202ENST00000413872 CDKN2AP42771 156 aaKnown RBP15.4■□□□□ 0.06
PHRF1-202ENST00000413872 VMA21Q3ZAQ7 101 aa15.4■□□□□ 0.06
PHRF1-202ENST00000413872 ZNF416Q9BWM5 594 aa15.4■□□□□ 0.06
PHRF1-202ENST00000413872 SUCNR1Q9BXA5 334 aa15.4■□□□□ 0.06
PHRF1-202ENST00000413872 M0QZ24 198 aa15.4■□□□□ 0.06
PHRF1-202ENST00000413872 LYZL6O75951 148 aa15.4■□□□□ 0.06
PHRF1-202ENST00000413872 NXPH3O95157 252 aa15.4■□□□□ 0.06
PHRF1-202ENST00000413872 ZNF17P17021 662 aa15.4■□□□□ 0.06
PHRF1-202ENST00000413872 DTYMKP23919 212 aa15.4■□□□□ 0.06
PHRF1-202ENST00000413872 ASB10Q8WXI3 467 aa15.4■□□□□ 0.06
PHRF1-202ENST00000413872 ZNF251Q9BRH9 671 aa15.4■□□□□ 0.06
PHRF1-202ENST00000413872 ADGRL4Q9HBW9 690 aa15.4■□□□□ 0.06
PHRF1-202ENST00000413872 ARPC4-TTLL3A0A0A6YYG9 625 aa15.4■□□□□ 0.06
PHRF1-202ENST00000413872 CRYM-AS1A6NIL9 109 aa15.4■□□□□ 0.06
PHRF1-202ENST00000413872 ANGPTL7O43827 346 aa15.4■□□□□ 0.06
PHRF1-202ENST00000413872 LALBAP00709 142 aa15.4■□□□□ 0.06
PHRF1-202ENST00000413872 PIGPP57054 158 aa15.4■□□□□ 0.06
PHRF1-202ENST00000413872 TNFAIP6P98066 277 aaPredicted RBP15.4■□□□□ 0.06
PHRF1-202ENST00000413872 SPANXN5Q5MJ07 72 aa15.4■□□□□ 0.06
PHRF1-202ENST00000413872 MFSD4AQ8N468 514 aa15.4■□□□□ 0.06
PHRF1-202ENST00000413872 TM4SF19Q96DZ7 209 aa15.4■□□□□ 0.06
PHRF1-202ENST00000413872 C10orf90Q96M02 699 aa15.4■□□□□ 0.06
PHRF1-202ENST00000413872 TAAR3PQ9P1P4 343 aa15.4■□□□□ 0.06
PHRF1-202ENST00000413872 CACNA1CQ13936 2221 aa15.4■□□□□ 0.06
PHRF1-202ENST00000413872 RAB19A4D1S5 217 aa15.4■□□□□ 0.06
PHRF1-202ENST00000413872 CCSO14618 274 aa15.4■□□□□ 0.06
PHRF1-202ENST00000413872 MBP02144 154 aa15.4■□□□□ 0.06
PHRF1-202ENST00000413872 ACKR3P25106 362 aa15.4■□□□□ 0.06
PHRF1-202ENST00000413872 TERB2Q8NHR7 220 aa15.4■□□□□ 0.06
PHRF1-202ENST00000413872 SCARB1Q8WTV0 552 aa15.4■□□□□ 0.06
PHRF1-202ENST00000413872 ST8SIA4Q92187 359 aa15.4■□□□□ 0.06
PHRF1-202ENST00000413872 RAB1CQ92928 201 aa15.4■□□□□ 0.06
PHRF1-202ENST00000413872 ZNF501Q96CX3 271 aaPredicted RBP15.4■□□□□ 0.06
PHRF1-202ENST00000413872 DERL3Q96Q80 235 aa15.4■□□□□ 0.06
PHRF1-202ENST00000413872 IGFBP7Q16270 282 aa15.39■□□□□ 0.05
PHRF1-202ENST00000413872 ACOT7LQ6ZUV0 252 aa15.39■□□□□ 0.05
PHRF1-202ENST00000413872 TMUB2Q71RG4 321 aa15.39■□□□□ 0.05
PHRF1-202ENST00000413872 FGF11Q92914 225 aa15.39■□□□□ 0.05
PHRF1-202ENST00000413872 DDA1Q9BW61 102 aa15.39■□□□□ 0.05
PHRF1-202ENST00000413872 CSAG2Q9Y5P2 127 aa15.39■□□□□ 0.05
PHRF1-202ENST00000413872 MLF1P58340 268 aa15.39■□□□□ 0.05
PHRF1-202ENST00000413872 BPIFB3P59826 476 aa15.39■□□□□ 0.05
PHRF1-202ENST00000413872 CD226Q15762 336 aa15.39■□□□□ 0.05
PHRF1-202ENST00000413872 ALKBH6Q3KRA9 238 aa15.39■□□□□ 0.05
PHRF1-202ENST00000413872 OR2B11Q5JQS5 317 aa15.39■□□□□ 0.05
PHRF1-202ENST00000413872 BHLHA15Q7RTS1 189 aaPredicted RBP15.39■□□□□ 0.05
PHRF1-202ENST00000413872 MARCH1Q8TCQ1 289 aa15.39■□□□□ 0.05
PHRF1-202ENST00000413872 YIPF5Q969M3 257 aa15.39■□□□□ 0.05
PHRF1-202ENST00000413872 TRMT61AQ96FX7 289 aaKnown RBP15.39■□□□□ 0.05
PHRF1-202ENST00000413872 MOGAT1Q96PD6 335 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms