RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 FAM192AQ9GZU8 254 aa15.43■□□□□ 0.06
SDC1-203ENST00000403076 SLC22A4Q9H015 551 aa15.43■□□□□ 0.06
SDC1-203ENST00000403076 PPP1R3EQ9H7J1 279 aa15.43■□□□□ 0.06
SDC1-203ENST00000403076 PLEKHB1Q9UF11 243 aaPredicted RBP15.43■□□□□ 0.06
SDC1-203ENST00000403076 TRAV1-2A0A0B4J238 106 aa15.43■□□□□ 0.06
SDC1-203ENST00000403076 MAGEB3O15480 346 aa15.43■□□□□ 0.06
SDC1-203ENST00000403076 CTAG2O75638 210 aa15.43■□□□□ 0.06
SDC1-203ENST00000403076 CDRT1O95170 752 aa15.43■□□□□ 0.06
SDC1-203ENST00000403076 HCKP08631 526 aa15.43■□□□□ 0.06
SDC1-203ENST00000403076 IGFBP3P17936 291 aaPredicted RBP15.43■□□□□ 0.06
SDC1-203ENST00000403076 SDC2P34741 201 aa15.43■□□□□ 0.06
SDC1-203ENST00000403076 MXD1Q05195 221 aa15.43■□□□□ 0.06
SDC1-203ENST00000403076 UBE2V2Q15819 145 aa15.43■□□□□ 0.06
SDC1-203ENST00000403076 TMEM42Q69YG0 159 aa15.43■□□□□ 0.06
SDC1-203ENST00000403076 TMEM200AQ86VY9 491 aa15.43■□□□□ 0.06
SDC1-203ENST00000403076 OR51A2Q8NGJ7 313 aa15.43■□□□□ 0.06
SDC1-203ENST00000403076 TRMT10AQ8TBZ6 339 aaKnown RBP15.43■□□□□ 0.06
SDC1-203ENST00000403076 C12orf43Q96C57 262 aaKnown RBP15.43■□□□□ 0.06
SDC1-203ENST00000403076 DGCR14Q96DF8 476 aaKnown RBP15.43■□□□□ 0.06
SDC1-203ENST00000403076 TECTBQ96PL2 329 aa15.43■□□□□ 0.06
SDC1-203ENST00000403076 SLC30A2Q9BRI3 323 aa15.43■□□□□ 0.06
SDC1-203ENST00000403076 ADAT1Q9BUB4 502 aaKnown RBP15.43■□□□□ 0.06
SDC1-203ENST00000403076 CLEC4MQ9H2X3 399 aaPredicted RBP15.43■□□□□ 0.06
SDC1-203ENST00000403076 ABCB9Q9NP78 766 aa15.43■□□□□ 0.06
SDC1-203ENST00000403076 DYNLRB1Q9NP97 96 aa15.43■□□□□ 0.06
SDC1-203ENST00000403076 CYSLTR2Q9NS75 346 aa15.43■□□□□ 0.06
SDC1-203ENST00000403076 CGGBP1Q9UFW8 167 aaPredicted RBP15.43■□□□□ 0.06
SDC1-203ENST00000403076 NOP16Q9Y3C1 178 aaKnown RBP15.43■□□□□ 0.06
SDC1-203ENST00000403076 DOPEY2Q9Y3R5 2298 aa15.42■□□□□ 0.06
SDC1-203ENST00000403076 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP15.42■□□□□ 0.06
SDC1-203ENST00000403076 A0A1W2PPR1 153 aa15.42■□□□□ 0.06
SDC1-203ENST00000403076 H3BMQ9 156 aa15.42■□□□□ 0.06
SDC1-203ENST00000403076 PDCD5O14737 125 aa15.42■□□□□ 0.06
SDC1-203ENST00000403076 SLC22A1O15245 554 aa15.42■□□□□ 0.06
SDC1-203ENST00000403076 ERCC1P07992 297 aaPredicted RBP15.42■□□□□ 0.06
SDC1-203ENST00000403076 PRKACBP22694 351 aa15.42■□□□□ 0.06
SDC1-203ENST00000403076 BDKRB2P30411 391 aa15.42■□□□□ 0.06
SDC1-203ENST00000403076 MTNR1BP49286 362 aa15.42■□□□□ 0.06
SDC1-203ENST00000403076 ZNF81P51508 661 aa15.42■□□□□ 0.06
SDC1-203ENST00000403076 TLE4Q04727 773 aa15.42■□□□□ 0.06
SDC1-203ENST00000403076 EFNB3Q15768 340 aa15.42■□□□□ 0.06
SDC1-203ENST00000403076 AGAP6Q5VW22 663 aa15.42■□□□□ 0.06
SDC1-203ENST00000403076 ASPHD2Q6ICH7 369 aa15.42■□□□□ 0.06
SDC1-203ENST00000403076 USP43Q70EL4 1123 aa15.42■□□□□ 0.06
SDC1-203ENST00000403076 UBASH3BQ8TF42 649 aa15.42■□□□□ 0.06
SDC1-203ENST00000403076 MICU1Q9BPX6 476 aa15.42■□□□□ 0.06
SDC1-203ENST00000403076 TPK1Q9H3S4 243 aa15.42■□□□□ 0.06
SDC1-203ENST00000403076 TMEM138Q9NPI0 162 aa15.42■□□□□ 0.06
SDC1-203ENST00000403076 NKIRAS2Q9NYR9 191 aa15.42■□□□□ 0.06
SDC1-203ENST00000403076 AK6Q9Y3D8 172 aaKnown RBP15.42■□□□□ 0.06
SDC1-203ENST00000403076 FAM230AA0A1W2PPH8 454 aa15.41■□□□□ 0.06
SDC1-203ENST00000403076 FAM221AA4D161 298 aa15.41■□□□□ 0.06
SDC1-203ENST00000403076 MEGF11A6BM72 1044 aa15.41■□□□□ 0.06
SDC1-203ENST00000403076 H0YL77 283 aa15.41■□□□□ 0.06
SDC1-203ENST00000403076 M0R233 179 aa15.41■□□□□ 0.06
SDC1-203ENST00000403076 AZGP1P25311 298 aaKnown RBP15.41■□□□□ 0.06
SDC1-203ENST00000403076 MMP15P51511 669 aa15.41■□□□□ 0.06
SDC1-203ENST00000403076 SNRPD2P62316 118 aaKnown RBP15.41■□□□□ 0.06
SDC1-203ENST00000403076 CEACAM21Q3KPI0 293 aa15.41■□□□□ 0.06
SDC1-203ENST00000403076 Q6ZR03 302 aa15.41■□□□□ 0.06
SDC1-203ENST00000403076 TPRA1Q86W33 373 aa15.41■□□□□ 0.06
SDC1-203ENST00000403076 OR2Z1Q8NG97 314 aa15.41■□□□□ 0.06
SDC1-203ENST00000403076 OR10AD1Q8NGE0 317 aa15.41■□□□□ 0.06
SDC1-203ENST00000403076 GTF3AQ92664 365 aaKnown RBP15.41■□□□□ 0.06
SDC1-203ENST00000403076 BORCS8Q96FH0 119 aa15.41■□□□□ 0.06
SDC1-203ENST00000403076 RNF170Q96K19 258 aa15.41■□□□□ 0.06
SDC1-203ENST00000403076 DCSTAMPQ9H295 470 aa15.41■□□□□ 0.06
SDC1-203ENST00000403076 USP9YO00507 2555 aaPredicted RBP15.4■□□□□ 0.06
SDC1-203ENST00000403076 IGKV1-9A0A0C4DH69 117 aa15.4■□□□□ 0.06
SDC1-203ENST00000403076 SHISA3A0PJX4 238 aa15.4■□□□□ 0.06
SDC1-203ENST00000403076 SMIM30A4D0T7 59 aa15.4■□□□□ 0.06
SDC1-203ENST00000403076 ZSCAN5BA6NJL1 495 aa15.4■□□□□ 0.06
SDC1-203ENST00000403076 SPRY3O43610 288 aa15.4■□□□□ 0.06
SDC1-203ENST00000403076 ALX3O95076 343 aa15.4■□□□□ 0.06
SDC1-203ENST00000403076 NAT2P11245 290 aa15.4■□□□□ 0.06
SDC1-203ENST00000403076 RAB3BP20337 219 aa15.4■□□□□ 0.06
SDC1-203ENST00000403076 FUT6P51993 359 aa15.4■□□□□ 0.06
SDC1-203ENST00000403076 DDI2Q5TDH0 399 aa15.4■□□□□ 0.06
SDC1-203ENST00000403076 KRT74Q7RTS7 529 aa15.4■□□□□ 0.06
SDC1-203ENST00000403076 LRRTM1Q86UE6 522 aa15.4■□□□□ 0.06
SDC1-203ENST00000403076 ZNF611Q8N823 705 aa15.4■□□□□ 0.06
SDC1-203ENST00000403076 SPERTQ8NA61 448 aa15.4■□□□□ 0.06
SDC1-203ENST00000403076 OR5A2Q8NGI9 324 aa15.4■□□□□ 0.06
SDC1-203ENST00000403076 NDNFQ8TB73 568 aa15.4■□□□□ 0.06
SDC1-203ENST00000403076 OR5P3Q8WZ94 311 aa15.4■□□□□ 0.06
SDC1-203ENST00000403076 ITPKCQ96DU7 683 aa15.4■□□□□ 0.06
SDC1-203ENST00000403076 RTL8AQ9BWD3 113 aa15.4■□□□□ 0.06
SDC1-203ENST00000403076 CBLN4Q9NTU7 201 aa15.4■□□□□ 0.06
SDC1-203ENST00000403076 CLEC2LP0C7M8 214 aa15.39■□□□□ 0.05
SDC1-203ENST00000403076 GPM6AP51674 278 aa15.39■□□□□ 0.05
SDC1-203ENST00000403076 ATP1B3P54709 279 aa15.39■□□□□ 0.05
SDC1-203ENST00000403076 SPCS2Q15005 226 aa15.39■□□□□ 0.05
SDC1-203ENST00000403076 MST1LQ2TV78 715 aa15.39■□□□□ 0.05
SDC1-203ENST00000403076 FOXB2Q5VYV0 432 aa15.39■□□□□ 0.05
SDC1-203ENST00000403076 GLT8D1Q68CQ7 371 aa15.39■□□□□ 0.05
SDC1-203ENST00000403076 ZNF529Q6P280 563 aa15.39■□□□□ 0.05
SDC1-203ENST00000403076 JAGN1Q8N5M9 183 aa15.39■□□□□ 0.05
SDC1-203ENST00000403076 OR52N4Q8NGI2 321 aa15.39■□□□□ 0.05
SDC1-203ENST00000403076 SPSB1Q96BD6 273 aa15.39■□□□□ 0.05
SDC1-203ENST00000403076 ELMOD3Q96FG2 381 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms