RNA–Protein interactions for RNA: ENST00000345512.7

PTPRU-201, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRU, Length 4,470 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-201ENST00000345512 SFT2D1Q8WV19 159 aa13.83□□□□□ -0.2
PTPRU-201ENST00000345512 BCO1Q9HAY6 547 aa13.83□□□□□ -0.2
PTPRU-201ENST00000345512 CST4P01036 141 aa13.83□□□□□ -0.2
PTPRU-201ENST00000345512 FGF2P09038 288 aa13.83□□□□□ -0.2
PTPRU-201ENST00000345512 FOLR1P15328 257 aa13.83□□□□□ -0.2
PTPRU-201ENST00000345512 HOXC12P31275 282 aa13.83□□□□□ -0.2
PTPRU-201ENST00000345512 NR0B2Q15466 257 aa13.83□□□□□ -0.2
PTPRU-201ENST00000345512 NUBPLQ8TB37 319 aa13.83□□□□□ -0.2
PTPRU-201ENST00000345512 NINJ1Q92982 152 aa13.83□□□□□ -0.2
PTPRU-201ENST00000345512 ZNF426Q9BUY5 554 aa13.83□□□□□ -0.2
PTPRU-201ENST00000345512 ANKRD10Q9NXR5 420 aa13.83□□□□□ -0.2
PTPRU-201ENST00000345512 CD300LBA8K4G0 201 aa13.83□□□□□ -0.2
PTPRU-201ENST00000345512 NKX2-1P43699 371 aaPredicted RBP13.83□□□□□ -0.2
PTPRU-201ENST00000345512 ECH1Q13011 328 aa13.83□□□□□ -0.2
PTPRU-201ENST00000345512 ZNF100Q8IYN0 542 aa13.83□□□□□ -0.2
PTPRU-201ENST00000345512 ADAT3Q96EY9 351 aaPredicted RBP13.83□□□□□ -0.2
PTPRU-201ENST00000345512 PIK3IP1Q96FE7 263 aa13.83□□□□□ -0.2
PTPRU-201ENST00000345512 NELFAQ9H3P2 528 aa13.83□□□□□ -0.2
PTPRU-201ENST00000345512 IFT22Q9H7X7 185 aa13.83□□□□□ -0.2
PTPRU-201ENST00000345512 ZNF107Q9UII5 783 aaPredicted RBP13.83□□□□□ -0.2
PTPRU-201ENST00000345512 NSG1A0A0A6YYJ2 146 aa13.82□□□□□ -0.2
PTPRU-201ENST00000345512 C5orf67F2Z3F1 127 aa13.82□□□□□ -0.2
PTPRU-201ENST00000345512 NME1P15531 152 aaKnown RBP13.82□□□□□ -0.2
PTPRU-201ENST00000345512 GUCA2BQ16661 112 aa13.82□□□□□ -0.2
PTPRU-201ENST00000345512 MICBQ29980 383 aa13.82□□□□□ -0.2
PTPRU-201ENST00000345512 SLC36A1Q7Z2H8 476 aa13.82□□□□□ -0.2
PTPRU-201ENST00000345512 WDR5BQ86VZ2 330 aa13.82□□□□□ -0.2
PTPRU-201ENST00000345512 NIPSNAP3BQ9BS92 247 aa13.82□□□□□ -0.2
PTPRU-201ENST00000345512 SCN5AQ14524 2016 aa13.82□□□□□ -0.2
PTPRU-201ENST00000345512 LYPD3O95274 346 aa13.82□□□□□ -0.2
PTPRU-201ENST00000345512 SLC34A2O95436 690 aa13.82□□□□□ -0.2
PTPRU-201ENST00000345512 SLC25A4P12235 298 aa13.82□□□□□ -0.2
PTPRU-201ENST00000345512 PTGFRP43088 359 aa13.82□□□□□ -0.2
PTPRU-201ENST00000345512 IDH3GP51553 393 aaPredicted RBP13.82□□□□□ -0.2
PTPRU-201ENST00000345512 PCBD1P61457 104 aa13.82□□□□□ -0.2
PTPRU-201ENST00000345512 HNF4GQ14541 408 aa13.82□□□□□ -0.2
PTPRU-201ENST00000345512 SLC26A10Q8NG04 563 aa13.82□□□□□ -0.2
PTPRU-201ENST00000345512 MCHR2Q969V1 340 aa13.82□□□□□ -0.2
PTPRU-201ENST00000345512 FOXQ1Q9C009 403 aa13.82□□□□□ -0.2
PTPRU-201ENST00000345512 SHARPINQ9H0F6 387 aa13.82□□□□□ -0.2
PTPRU-201ENST00000345512 GHRLQ9UBU3 117 aa13.82□□□□□ -0.2
PTPRU-201ENST00000345512 OR2C1O95371 312 aa13.82□□□□□ -0.2
PTPRU-201ENST00000345512 JMJD7P0C870 316 aa13.82□□□□□ -0.2
PTPRU-201ENST00000345512 FASLGP48023 281 aa13.82□□□□□ -0.2
PTPRU-201ENST00000345512 MIDNQ504T8 468 aa13.82□□□□□ -0.2
PTPRU-201ENST00000345512 LIPHQ8WWY8 451 aa13.82□□□□□ -0.2
PTPRU-201ENST00000345512 ASB10Q8WXI3 467 aa13.82□□□□□ -0.2
PTPRU-201ENST00000345512 FGF11Q92914 225 aa13.82□□□□□ -0.2
PTPRU-201ENST00000345512 WNT2BQ93097 391 aa13.82□□□□□ -0.2
PTPRU-201ENST00000345512 TRAPPC2LH3BP13 241 aa13.82□□□□□ -0.2
PTPRU-201ENST00000345512 FCARP24071 287 aa13.82□□□□□ -0.2
PTPRU-201ENST00000345512 SUMO3P55854 103 aaPredicted RBP13.82□□□□□ -0.2
PTPRU-201ENST00000345512 RPS4XP62701 263 aaKnown RBP13.82□□□□□ -0.2
PTPRU-201ENST00000345512 SRPXP78539 464 aa13.82□□□□□ -0.2
PTPRU-201ENST00000345512 IKZF1Q13422 519 aa13.82□□□□□ -0.2
PTPRU-201ENST00000345512 C6orf201Q7Z4U5 140 aa13.82□□□□□ -0.2
PTPRU-201ENST00000345512 ZNF561Q8N587 486 aa13.82□□□□□ -0.2
PTPRU-201ENST00000345512 KCNMB2Q9Y691 235 aa13.82□□□□□ -0.2
PTPRU-201ENST00000345512 FIGNL2A6NMB9 653 aa13.81□□□□□ -0.2
PTPRU-201ENST00000345512 LMX1BO60663 402 aa13.81□□□□□ -0.2
PTPRU-201ENST00000345512 MRPS34P82930 218 aaKnown RBP13.81□□□□□ -0.2
PTPRU-201ENST00000345512 HAGHQ16775 308 aa13.81□□□□□ -0.2
PTPRU-201ENST00000345512 PUSL1Q8N0Z8 303 aaKnown RBP13.81□□□□□ -0.2
PTPRU-201ENST00000345512 LFNGQ8NES3 379 aa13.81□□□□□ -0.2
PTPRU-201ENST00000345512 OR5AP2Q8NGF4 316 aa13.81□□□□□ -0.2
PTPRU-201ENST00000345512 KCNK7Q9Y2U2 307 aa13.81□□□□□ -0.2
PTPRU-201ENST00000345512 C17orf51A8MQB3 221 aa13.81□□□□□ -0.2
PTPRU-201ENST00000345512 SPRY1O43609 319 aaPredicted RBP13.81□□□□□ -0.2
PTPRU-201ENST00000345512 H2AFB1P0C5Y9 115 aa13.81□□□□□ -0.2
PTPRU-201ENST00000345512 MMP16P51512 607 aa13.81□□□□□ -0.2
PTPRU-201ENST00000345512 TMEM268Q5VZI3 342 aa13.81□□□□□ -0.2
PTPRU-201ENST00000345512 OIT3Q8WWZ8 545 aa13.81□□□□□ -0.2
PTPRU-201ENST00000345512 SLX1AQ9BQ83 275 aa13.81□□□□□ -0.2
PTPRU-201ENST00000345512 MRPL22Q9NWU5 206 aaKnown RBP13.81□□□□□ -0.2
PTPRU-201ENST00000345512 FBXL17Q9UF56 701 aa13.81□□□□□ -0.2
PTPRU-201ENST00000345512 YBX2Q9Y2T7 364 aaKnown RBP13.81□□□□□ -0.2
PTPRU-201ENST00000345512 ARHGEF17Q96PE2 2063 aaPredicted RBP13.81□□□□□ -0.2
PTPRU-201ENST00000345512 PIGBOS1A0A0B4J2F0 54 aa13.81□□□□□ -0.2
PTPRU-201ENST00000345512 S100A8P05109 93 aa13.81□□□□□ -0.2
PTPRU-201ENST00000345512 OR8B12Q8NGG6 310 aa13.81□□□□□ -0.2
PTPRU-201ENST00000345512 OR51F2Q8NH61 342 aa13.81□□□□□ -0.2
PTPRU-201ENST00000345512 LIN37Q96GY3 246 aaPredicted RBP13.81□□□□□ -0.2
PTPRU-201ENST00000345512 ZNF845Q96IR2 970 aaPredicted RBP13.81□□□□□ -0.2
PTPRU-201ENST00000345512 GDF15Q99988 308 aa13.81□□□□□ -0.2
PTPRU-201ENST00000345512 NMES1Q9C002 83 aa13.81□□□□□ -0.2
PTPRU-201ENST00000345512 MED19A0JLT2 244 aaPredicted RBP13.8□□□□□ -0.2
PTPRU-201ENST00000345512 IFNA4P05014 189 aa13.8□□□□□ -0.2
PTPRU-201ENST00000345512 PTAFRP25105 342 aa13.8□□□□□ -0.2
PTPRU-201ENST00000345512 SSR4P51571 173 aa13.8□□□□□ -0.2
PTPRU-201ENST00000345512 EGR4Q05215 589 aa13.8□□□□□ -0.2
PTPRU-201ENST00000345512 SHBQ15464 509 aa13.8□□□□□ -0.2
PTPRU-201ENST00000345512 C9orf40Q8IXQ3 194 aa13.8□□□□□ -0.2
PTPRU-201ENST00000345512 MED9Q9NWA0 146 aa13.8□□□□□ -0.2
PTPRU-201ENST00000345512 PRR32B1ATL7 298 aa13.8□□□□□ -0.2
PTPRU-201ENST00000345512 GPR137BO60478 399 aa13.8□□□□□ -0.2
PTPRU-201ENST00000345512 IGHV3-9P01782 118 aa13.8□□□□□ -0.2
PTPRU-201ENST00000345512 GDF1P27539 372 aa13.8□□□□□ -0.2
PTPRU-201ENST00000345512 GUK1Q16774 197 aa13.8□□□□□ -0.2
PTPRU-201ENST00000345512 PSMF1Q92530 271 aa13.8□□□□□ -0.2
PTPRU-201ENST00000345512 SCARF2Q96GP6 870 aaPredicted RBP13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms