RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 AKAP13Q12802 2813 aa9.06□□□□□ -0.96
LIMA1-201ENST00000341247 FAM166BA8MTA8 275 aa9.06□□□□□ -0.96
LIMA1-201ENST00000341247 PDGFAP04085 211 aa9.06□□□□□ -0.96
LIMA1-201ENST00000341247 CELA3AP09093 270 aa9.06□□□□□ -0.96
LIMA1-201ENST00000341247 ZNF32P17041 273 aa9.06□□□□□ -0.96
LIMA1-201ENST00000341247 CYB561P49447 251 aa9.06□□□□□ -0.96
LIMA1-201ENST00000341247 CEACAM16Q2WEN9 425 aa9.06□□□□□ -0.96
LIMA1-201ENST00000341247 CLLU1Q5K131 121 aa9.06□□□□□ -0.96
LIMA1-201ENST00000341247 C6orf201Q7Z4U5 140 aa9.06□□□□□ -0.96
LIMA1-201ENST00000341247 GPR137CQ8N3F9 429 aa9.06□□□□□ -0.96
LIMA1-201ENST00000341247 PPP1R1CQ8WVI7 109 aa9.06□□□□□ -0.96
LIMA1-201ENST00000341247 FBXW5Q969U6 566 aa9.06□□□□□ -0.96
LIMA1-201ENST00000341247 COMMD9Q9P000 198 aa9.06□□□□□ -0.96
LIMA1-201ENST00000341247 FLVCR1Q9Y5Y0 555 aa9.06□□□□□ -0.96
LIMA1-201ENST00000341247 CACNA1HO95180 2353 aa9.06□□□□□ -0.96
LIMA1-201ENST00000341247 LNP1A1A4G5 178 aa9.05□□□□□ -0.96
LIMA1-201ENST00000341247 C9orf170A2RU37 121 aa9.05□□□□□ -0.96
LIMA1-201ENST00000341247 ZSCAN5BA6NJL1 495 aa9.05□□□□□ -0.96
LIMA1-201ENST00000341247 LRRC3CA6NJW4 275 aa9.05□□□□□ -0.96
LIMA1-201ENST00000341247 DHRS3O75911 302 aa9.05□□□□□ -0.96
LIMA1-201ENST00000341247 VAMP5O95183 116 aa9.05□□□□□ -0.96
LIMA1-201ENST00000341247 C4BPBP20851 252 aa9.05□□□□□ -0.96
LIMA1-201ENST00000341247 HTR5AP47898 357 aa9.05□□□□□ -0.96
LIMA1-201ENST00000341247 B3GALT5-AS1P59052 145 aa9.05□□□□□ -0.96
LIMA1-201ENST00000341247 KCNMB1Q16558 191 aa9.05□□□□□ -0.96
LIMA1-201ENST00000341247 RFPL4BQ6ZWI9 263 aa9.05□□□□□ -0.96
LIMA1-201ENST00000341247 NAXDQ8IW45 347 aa9.05□□□□□ -0.96
LIMA1-201ENST00000341247 BOLLQ8N9W6 283 aaKnown RBP9.05□□□□□ -0.96
LIMA1-201ENST00000341247 CSNK2A3Q8NEV1 391 aa9.05□□□□□ -0.96
LIMA1-201ENST00000341247 SGK3Q96BR1 496 aa9.05□□□□□ -0.96
LIMA1-201ENST00000341247 SGCZQ96LD1 299 aa9.05□□□□□ -0.96
LIMA1-201ENST00000341247 LRFN1Q9P244 771 aa9.05□□□□□ -0.96
LIMA1-201ENST00000341247 LGALS8O00214 317 aa9.05□□□□□ -0.96
LIMA1-201ENST00000341247 RLN2P04090 185 aa9.05□□□□□ -0.96
LIMA1-201ENST00000341247 OR3A2P47893 321 aa9.05□□□□□ -0.96
LIMA1-201ENST00000341247 MTCP1P56278 107 aa9.05□□□□□ -0.96
LIMA1-201ENST00000341247 RAC3P60763 192 aa9.05□□□□□ -0.96
LIMA1-201ENST00000341247 CAMK2BQ13554 666 aa9.05□□□□□ -0.96
LIMA1-201ENST00000341247 AANATQ16613 207 aa9.05□□□□□ -0.96
LIMA1-201ENST00000341247 C10orf128Q5T292 105 aa9.05□□□□□ -0.96
LIMA1-201ENST00000341247 LYG2Q86SG7 212 aa9.05□□□□□ -0.96
LIMA1-201ENST00000341247 LRRC20Q8TCA0 184 aa9.05□□□□□ -0.96
LIMA1-201ENST00000341247 DYRK2Q92630 601 aa9.05□□□□□ -0.96
LIMA1-201ENST00000341247 ZC3H10Q96K80 434 aaKnown RBP9.05□□□□□ -0.96
LIMA1-201ENST00000341247 DMRTA2Q96SC8 542 aa9.05□□□□□ -0.96
LIMA1-201ENST00000341247 IER2Q9BTL4 223 aa9.05□□□□□ -0.96
LIMA1-201ENST00000341247 URM1Q9BTM9 101 aaKnown RBP9.05□□□□□ -0.96
LIMA1-201ENST00000341247 NARFLQ9H6Q4 476 aa9.05□□□□□ -0.96
LIMA1-201ENST00000341247 FOXD3Q9UJU5 478 aaPredicted RBP9.05□□□□□ -0.96
LIMA1-201ENST00000341247 A0A096LPE4 126 aa9.05□□□□□ -0.96
LIMA1-201ENST00000341247 LOC102725191A0A1B0GVB3 256 aa9.05□□□□□ -0.96
LIMA1-201ENST00000341247 A0A1W2PPZ6 126 aa9.05□□□□□ -0.96
LIMA1-201ENST00000341247 FAM221AA4D161 298 aa9.05□□□□□ -0.96
LIMA1-201ENST00000341247 NR2C1P13056 603 aa9.05□□□□□ -0.96
LIMA1-201ENST00000341247 CCL2P13500 99 aa9.05□□□□□ -0.96
LIMA1-201ENST00000341247 ZBTB25P24278 435 aa9.05□□□□□ -0.96
LIMA1-201ENST00000341247 FKBP2P26885 142 aaKnown RBP9.05□□□□□ -0.96
LIMA1-201ENST00000341247 SRD5A2P31213 254 aa9.05□□□□□ -0.96
LIMA1-201ENST00000341247 CLDN15P56746 228 aa9.05□□□□□ -0.96
LIMA1-201ENST00000341247 GK2Q14410 553 aaPredicted RBP9.05□□□□□ -0.96
LIMA1-201ENST00000341247 GGNQ86UU5 652 aa9.05□□□□□ -0.96
LIMA1-201ENST00000341247 OR5M8Q8NGP6 311 aa9.05□□□□□ -0.96
LIMA1-201ENST00000341247 EDEM2Q9BV94 578 aa9.05□□□□□ -0.96
LIMA1-201ENST00000341247 ALX4Q9H161 411 aaPredicted RBP9.05□□□□□ -0.96
LIMA1-201ENST00000341247 CNOT1A5YKK6 2376 aaKnown RBP9.05□□□□□ -0.96
LIMA1-201ENST00000341247 CRYZL1O95825 349 aa9.04□□□□□ -0.96
LIMA1-201ENST00000341247 KNG1P01042 644 aa9.04□□□□□ -0.96
LIMA1-201ENST00000341247 CHRM2P08172 466 aa9.04□□□□□ -0.96
LIMA1-201ENST00000341247 MELTFP08582 738 aa9.04□□□□□ -0.96
LIMA1-201ENST00000341247 ITGA3P26006 1051 aa9.04□□□□□ -0.96
LIMA1-201ENST00000341247 SNU13P55769 128 aaKnown RBP9.04□□□□□ -0.96
LIMA1-201ENST00000341247 DHODHQ02127 395 aa9.04□□□□□ -0.96
LIMA1-201ENST00000341247 ECH1Q13011 328 aa9.04□□□□□ -0.96
LIMA1-201ENST00000341247 C3AR1Q16581 482 aa9.04□□□□□ -0.96
LIMA1-201ENST00000341247 TAF9Q16594 264 aa9.04□□□□□ -0.96
LIMA1-201ENST00000341247 NHLRC3Q5JS37 347 aa9.04□□□□□ -0.96
LIMA1-201ENST00000341247 PEAR1Q5VY43 1037 aaPredicted RBP9.04□□□□□ -0.96
LIMA1-201ENST00000341247 SLC25A42Q86VD7 318 aa9.04□□□□□ -0.96
LIMA1-201ENST00000341247 OR56B1Q8NGI3 324 aa9.04□□□□□ -0.96
LIMA1-201ENST00000341247 OR5H2Q8NGV7 314 aa9.04□□□□□ -0.96
LIMA1-201ENST00000341247 SPTSSAQ969W0 71 aa9.04□□□□□ -0.96
LIMA1-201ENST00000341247 REEP6Q96HR9 211 aa9.04□□□□□ -0.96
LIMA1-201ENST00000341247 EHFQ9NZC4 300 aa9.04□□□□□ -0.96
LIMA1-201ENST00000341247 RFPL4AA6NLU0 287 aa9.04□□□□□ -0.96
LIMA1-201ENST00000341247 RFPL4AL1F8VTS6 287 aa9.04□□□□□ -0.96
LIMA1-201ENST00000341247 ADAP1O75689 374 aa9.04□□□□□ -0.96
LIMA1-201ENST00000341247 ZNF239Q16600 458 aaKnown RBP9.04□□□□□ -0.96
LIMA1-201ENST00000341247 CDCP2Q5VXM1 449 aa9.04□□□□□ -0.96
LIMA1-201ENST00000341247 CRIP3Q6Q6R5 217 aa9.04□□□□□ -0.96
LIMA1-201ENST00000341247 ZNF75AQ96N20 296 aa9.04□□□□□ -0.96
LIMA1-201ENST00000341247 SIGLEC12Q96PQ1 595 aa9.04□□□□□ -0.96
LIMA1-201ENST00000341247 PHB2Q99623 299 aa9.04□□□□□ -0.96
LIMA1-201ENST00000341247 TMPRSS13Q9BYE2 586 aa9.04□□□□□ -0.96
LIMA1-201ENST00000341247 WDR13Q9H1Z4 485 aa9.04□□□□□ -0.96
LIMA1-201ENST00000341247 R4GN57 208 aa9.04□□□□□ -0.96
LIMA1-201ENST00000341247 GJE1A6NN92 205 aa9.04□□□□□ -0.96
LIMA1-201ENST00000341247 C9orf172C9J069 976 aa9.04□□□□□ -0.96
LIMA1-201ENST00000341247 EFSO43281 561 aa9.04□□□□□ -0.96
LIMA1-201ENST00000341247 HPNP05981 417 aa9.04□□□□□ -0.96
LIMA1-201ENST00000341247 CCL1P22362 96 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms