RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 GPR107Q5VW38 600 aa12.81□□□□□ -0.36
TRIM28-207ENST00000597136 TMEM91Q6ZNR0 172 aa12.81□□□□□ -0.36
TRIM28-207ENST00000597136 COMMD2Q86X83 199 aa12.81□□□□□ -0.36
TRIM28-207ENST00000597136 KRTAP1-3Q8IUG1 177 aa12.81□□□□□ -0.36
TRIM28-207ENST00000597136 C1orf174Q8IYL3 243 aa12.81□□□□□ -0.36
TRIM28-207ENST00000597136 PLPP7Q8NBV4 271 aa12.81□□□□□ -0.36
TRIM28-207ENST00000597136 FAM71F1Q96KD3 344 aaPredicted RBP12.81□□□□□ -0.36
TRIM28-207ENST00000597136 FOXC2Q99958 501 aa12.81□□□□□ -0.36
TRIM28-207ENST00000597136 REPIN1Q9BWE0 567 aaKnown RBP12.81□□□□□ -0.36
TRIM28-207ENST00000597136 OR51E2Q9H255 320 aa12.81□□□□□ -0.36
TRIM28-207ENST00000597136 PTTG3PQ9NZH4 202 aa12.81□□□□□ -0.36
TRIM28-207ENST00000597136 STUB1Q9UNE7 303 aa12.81□□□□□ -0.36
TRIM28-207ENST00000597136 IGLV3-9A0A075B6K5 115 aa12.8□□□□□ -0.36
TRIM28-207ENST00000597136 TRBV5-5A0A0J9YX44 114 aa12.8□□□□□ -0.36
TRIM28-207ENST00000597136 DPPA5A6NC42 116 aa12.8□□□□□ -0.36
TRIM28-207ENST00000597136 H3BSA7 217 aa12.8□□□□□ -0.36
TRIM28-207ENST00000597136 GPX5O75715 221 aa12.8□□□□□ -0.36
TRIM28-207ENST00000597136 SC5DO75845 299 aa12.8□□□□□ -0.36
TRIM28-207ENST00000597136 RGS9O75916 674 aaPredicted RBP12.8□□□□□ -0.36
TRIM28-207ENST00000597136 SERPINA3P01011 423 aa12.8□□□□□ -0.36
TRIM28-207ENST00000597136 IGHV4-39P01824 125 aa12.8□□□□□ -0.36
TRIM28-207ENST00000597136 PAX1P15863 534 aa12.8□□□□□ -0.36
TRIM28-207ENST00000597136 TUBG1P23258 451 aa12.8□□□□□ -0.36
TRIM28-207ENST00000597136 CFL1P23528 166 aaKnown RBP12.8□□□□□ -0.36
TRIM28-207ENST00000597136 MAGEB1P43366 347 aa12.8□□□□□ -0.36
TRIM28-207ENST00000597136 ATP5J2P56134 94 aa12.8□□□□□ -0.36
TRIM28-207ENST00000597136 PRSS12P56730 875 aa12.8□□□□□ -0.36
TRIM28-207ENST00000597136 PSG7Q13046 419 aa12.8□□□□□ -0.36
TRIM28-207ENST00000597136 ZNF718Q3SXZ3 478 aa12.8□□□□□ -0.36
TRIM28-207ENST00000597136 ACSM3Q53FZ2 586 aa12.8□□□□□ -0.36
TRIM28-207ENST00000597136 FBXW12Q6X9E4 464 aa12.8□□□□□ -0.36
TRIM28-207ENST00000597136 SLC16A12Q6ZSM3 486 aa12.8□□□□□ -0.36
TRIM28-207ENST00000597136 Q6ZSR3 168 aa12.8□□□□□ -0.36
TRIM28-207ENST00000597136 DOK3Q7L591 496 aa12.8□□□□□ -0.36
TRIM28-207ENST00000597136 ANKRD13BQ86YJ7 626 aa12.8□□□□□ -0.36
TRIM28-207ENST00000597136 GTF3AQ92664 365 aaKnown RBP12.8□□□□□ -0.36
TRIM28-207ENST00000597136 VRK1Q99986 396 aaPredicted RBP12.8□□□□□ -0.36
TRIM28-207ENST00000597136 GSX2Q9BZM3 304 aa12.8□□□□□ -0.36
TRIM28-207ENST00000597136 NAA50Q9GZZ1 169 aaKnown RBP12.8□□□□□ -0.36
TRIM28-207ENST00000597136 CXXC4Q9H2H0 198 aa12.8□□□□□ -0.36
TRIM28-207ENST00000597136 TUBG2Q9NRH3 451 aa12.8□□□□□ -0.36
TRIM28-207ENST00000597136 TAAR3PQ9P1P4 343 aa12.8□□□□□ -0.36
TRIM28-207ENST00000597136 PMF1-BGLAPU3KQ54 211 aa12.8□□□□□ -0.36
TRIM28-207ENST00000597136 hCG_38984A0A1B0GV85 526 aa12.79□□□□□ -0.36
TRIM28-207ENST00000597136 TRDV1A0A1B0GX56 115 aa12.79□□□□□ -0.36
TRIM28-207ENST00000597136 LOC390937A0A1W2PQ73 354 aa12.79□□□□□ -0.36
TRIM28-207ENST00000597136 ZNF879B4DU55 563 aa12.79□□□□□ -0.36
TRIM28-207ENST00000597136 GABRPO00591 440 aa12.79□□□□□ -0.36
TRIM28-207ENST00000597136 OCM2P0CE71 109 aa12.79□□□□□ -0.36
TRIM28-207ENST00000597136 GALP22466 123 aa12.79□□□□□ -0.36
TRIM28-207ENST00000597136 EVX1P49640 407 aa12.79□□□□□ -0.36
TRIM28-207ENST00000597136 GSK3AP49840 483 aa12.79□□□□□ -0.36
TRIM28-207ENST00000597136 KLF3P57682 345 aaPredicted RBP12.79□□□□□ -0.36
TRIM28-207ENST00000597136 SNRPD2P62316 118 aaKnown RBP12.79□□□□□ -0.36
TRIM28-207ENST00000597136 FAM3AP98173 230 aa12.79□□□□□ -0.36
TRIM28-207ENST00000597136 TIMM50Q3ZCQ8 353 aa12.79□□□□□ -0.36
TRIM28-207ENST00000597136 Q499Y3 187 aa12.79□□□□□ -0.36
TRIM28-207ENST00000597136 UNQ9370/PRO34162Q6UXP9 181 aa12.79□□□□□ -0.36
TRIM28-207ENST00000597136 PGAP1Q75T13 922 aa12.79□□□□□ -0.36
TRIM28-207ENST00000597136 CLVS1Q8IUQ0 354 aaPredicted RBP12.79□□□□□ -0.36
TRIM28-207ENST00000597136 OR13C3Q8NGS6 347 aa12.79□□□□□ -0.36
TRIM28-207ENST00000597136 TSEN15Q8WW01 171 aaKnown RBP12.79□□□□□ -0.36
TRIM28-207ENST00000597136 RPL3LQ92901 407 aaKnown RBP12.79□□□□□ -0.36
TRIM28-207ENST00000597136 CMBLQ96DG6 245 aa12.79□□□□□ -0.36
TRIM28-207ENST00000597136 TRMT61AQ96FX7 289 aaKnown RBP12.79□□□□□ -0.36
TRIM28-207ENST00000597136 SORCS2Q96PQ0 1159 aa12.79□□□□□ -0.36
TRIM28-207ENST00000597136 OR14A2Q96R54 314 aa12.79□□□□□ -0.36
TRIM28-207ENST00000597136 OPA3Q9H6K4 179 aa12.79□□□□□ -0.36
TRIM28-207ENST00000597136 ENPP5Q9UJA9 477 aa12.79□□□□□ -0.36
TRIM28-207ENST00000597136 CEPT1Q9Y6K0 416 aa12.79□□□□□ -0.36
TRIM28-207ENST00000597136 ABCA1O95477 2261 aa12.79□□□□□ -0.36
TRIM28-207ENST00000597136 CSPG4Q6UVK1 2322 aa12.79□□□□□ -0.36
TRIM28-207ENST00000597136 H7C417 338 aa12.78□□□□□ -0.36
TRIM28-207ENST00000597136 AIREO43918 545 aa12.78□□□□□ -0.36
TRIM28-207ENST00000597136 LMX1BO60663 402 aa12.78□□□□□ -0.36
TRIM28-207ENST00000597136 MTRF1O75570 445 aaKnown RBP12.78□□□□□ -0.36
TRIM28-207ENST00000597136 DHRS3O75911 302 aa12.78□□□□□ -0.36
TRIM28-207ENST00000597136 IGHV3-13P01766 116 aa12.78□□□□□ -0.36
TRIM28-207ENST00000597136 NAT2P11245 290 aa12.78□□□□□ -0.36
TRIM28-207ENST00000597136 SOX2P48431 317 aa12.78□□□□□ -0.36
TRIM28-207ENST00000597136 TNK1Q13470 666 aa12.78□□□□□ -0.36
TRIM28-207ENST00000597136 OR8B8Q15620 311 aa12.78□□□□□ -0.36
TRIM28-207ENST00000597136 ZMAT1Q5H9K5 638 aa12.78□□□□□ -0.36
TRIM28-207ENST00000597136 MBNL2Q5VZF2 373 aaKnown RBP12.78□□□□□ -0.36
TRIM28-207ENST00000597136 MRPL21Q7Z2W9 205 aaKnown RBP12.78□□□□□ -0.36
TRIM28-207ENST00000597136 CEACAM19Q7Z692 300 aa12.78□□□□□ -0.36
TRIM28-207ENST00000597136 CCDC54Q8NEL0 328 aa12.78□□□□□ -0.36
TRIM28-207ENST00000597136 OR14K1Q8NGZ2 314 aa12.78□□□□□ -0.36
TRIM28-207ENST00000597136 CHCHD6Q9BRQ6 235 aa12.78□□□□□ -0.36
TRIM28-207ENST00000597136 TPK1Q9H3S4 243 aa12.78□□□□□ -0.36
TRIM28-207ENST00000597136 ZNF275Q9NSD4 429 aaPredicted RBP12.78□□□□□ -0.36
TRIM28-207ENST00000597136 SSR3Q9UNL2 185 aa12.78□□□□□ -0.36
TRIM28-207ENST00000597136 DHDHQ9UQ10 334 aa12.78□□□□□ -0.36
TRIM28-207ENST00000597136 V9GYS6 101 aa12.78□□□□□ -0.36
TRIM28-207ENST00000597136 ABCA2Q9BZC7 2435 aa12.78□□□□□ -0.36
TRIM28-207ENST00000597136 TRBV5-7A0A0A0MS05 114 aa12.77□□□□□ -0.36
TRIM28-207ENST00000597136 LOC100506127A0A0U1RQW1 187 aa12.77□□□□□ -0.36
TRIM28-207ENST00000597136 A0A1W2PPW3 197 aa12.77□□□□□ -0.36
TRIM28-207ENST00000597136 GATBO75879 557 aaKnown RBP12.77□□□□□ -0.36
TRIM28-207ENST00000597136 RAC2P15153 192 aa12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms