RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 C10orf128Q5T292 105 aa20.03■□□□□ 0.8
VPS53-211ENST00000571805 TMEM54Q969K7 222 aa20.03■□□□□ 0.8
VPS53-211ENST00000571805 PGAM5Q96HS1 289 aa20.03■□□□□ 0.8
VPS53-211ENST00000571805 URM1Q9BTM9 101 aaKnown RBP20.03■□□□□ 0.8
VPS53-211ENST00000571805 WDR54Q9H977 334 aa20.03■□□□□ 0.8
VPS53-211ENST00000571805 DUX4Q9UBX2 424 aa20.03■□□□□ 0.8
VPS53-211ENST00000571805 A0A087WZY1 265 aa20.03■□□□□ 0.8
VPS53-211ENST00000571805 C5orf51A6NDU8 294 aa20.03■□□□□ 0.8
VPS53-211ENST00000571805 FOXI3A8MTJ6 420 aaPredicted RBP20.03■□□□□ 0.8
VPS53-211ENST00000571805 FGF5P12034 268 aa20.03■□□□□ 0.8
VPS53-211ENST00000571805 MSR1P21757 451 aa20.03■□□□□ 0.8
VPS53-211ENST00000571805 NPY4RP50391 375 aa20.03■□□□□ 0.8
VPS53-211ENST00000571805 ENDOGQ14249 297 aaKnown RBP20.03■□□□□ 0.8
VPS53-211ENST00000571805 KISS1Q15726 138 aa20.03■□□□□ 0.8
VPS53-211ENST00000571805 FAM189A2Q15884 450 aa20.03■□□□□ 0.8
VPS53-211ENST00000571805 RSPO1Q2MKA7 263 aaPredicted RBP20.03■□□□□ 0.8
VPS53-211ENST00000571805 INO80EQ8NBZ0 244 aaPredicted RBP20.03■□□□□ 0.8
VPS53-211ENST00000571805 OR10A2Q9H208 303 aa20.03■□□□□ 0.8
VPS53-211ENST00000571805 C13orf42A0A1B0GVH6 325 aa20.02■□□□□ 0.8
VPS53-211ENST00000571805 TSPAN4O14817 238 aa20.02■□□□□ 0.8
VPS53-211ENST00000571805 KCNAB3O43448 404 aa20.02■□□□□ 0.8
VPS53-211ENST00000571805 ALDH3B1P43353 468 aa20.02■□□□□ 0.8
VPS53-211ENST00000571805 CSNK1A1P48729 337 aa20.02■□□□□ 0.8
VPS53-211ENST00000571805 ZNF133P52736 654 aaPredicted RBP20.02■□□□□ 0.8
VPS53-211ENST00000571805 EIF3IQ13347 325 aaKnown RBP20.02■□□□□ 0.8
VPS53-211ENST00000571805 FOXL2NBQ6ZUU3 175 aa20.02■□□□□ 0.8
VPS53-211ENST00000571805 NMES1Q9C002 83 aa20.02■□□□□ 0.8
VPS53-211ENST00000571805 LDAHQ9H6V9 325 aa20.02■□□□□ 0.8
VPS53-211ENST00000571805 CHMP1AQ9HD42 196 aaPredicted RBP20.02■□□□□ 0.8
VPS53-211ENST00000571805 TRBV6-7A0A0A0MS04 114 aa20.02■□□□□ 0.8
VPS53-211ENST00000571805 CNR1P21554 472 aa20.02■□□□□ 0.8
VPS53-211ENST00000571805 PTGFRP43088 359 aa20.02■□□□□ 0.8
VPS53-211ENST00000571805 SNTB1Q13884 538 aaKnown RBP20.02■□□□□ 0.8
VPS53-211ENST00000571805 HLA-BQ31612 363 aa20.02■□□□□ 0.8
VPS53-211ENST00000571805 PAN3Q58A45 887 aaKnown RBP20.02■□□□□ 0.8
VPS53-211ENST00000571805 NABP1Q96AH0 204 aa20.02■□□□□ 0.8
VPS53-211ENST00000571805 ZNF385AQ96PM9 386 aaKnown RBP20.02■□□□□ 0.8
VPS53-211ENST00000571805 RNF126Q9BV68 326 aa20.02■□□□□ 0.8
VPS53-211ENST00000571805 NELFAQ9H3P2 528 aa20.02■□□□□ 0.8
VPS53-211ENST00000571805 PROK2Q9HC23 129 aa20.02■□□□□ 0.8
VPS53-211ENST00000571805 ZNF160Q9HCG1 818 aa20.02■□□□□ 0.8
VPS53-211ENST00000571805 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP20.02■□□□□ 0.8
VPS53-211ENST00000571805 IGHV1-45A0A0A0MS14 117 aa20.01■□□□□ 0.79
VPS53-211ENST00000571805 OR5H15A6NDH6 313 aa20.01■□□□□ 0.79
VPS53-211ENST00000571805 CD63P08962 238 aa20.01■□□□□ 0.79
VPS53-211ENST00000571805 NAT2P11245 290 aa20.01■□□□□ 0.79
VPS53-211ENST00000571805 PEG10Q86TG7 708 aaKnown RBP20.01■□□□□ 0.79
VPS53-211ENST00000571805 LHFPL1Q86WI0 220 aa20.01■□□□□ 0.79
VPS53-211ENST00000571805 GJC3Q8NFK1 279 aa20.01■□□□□ 0.79
VPS53-211ENST00000571805 IMMP1LQ96LU5 166 aa20.01■□□□□ 0.79
VPS53-211ENST00000571805 ARPC5LQ9BPX5 153 aa20.01■□□□□ 0.79
VPS53-211ENST00000571805 V9GYS6 101 aa20.01■□□□□ 0.79
VPS53-211ENST00000571805 F5H0A9 414 aaPredicted RBP20.01■□□□□ 0.79
VPS53-211ENST00000571805 TRIM77I1YAP6 450 aa20.01■□□□□ 0.79
VPS53-211ENST00000571805 SFT2D2O95562 160 aa20.01■□□□□ 0.79
VPS53-211ENST00000571805 UMODP07911 640 aa20.01■□□□□ 0.79
VPS53-211ENST00000571805 NR2C1P13056 603 aa20.01■□□□□ 0.79
VPS53-211ENST00000571805 CBX5P45973 191 aa20.01■□□□□ 0.79
VPS53-211ENST00000571805 PPIAP62937 165 aaKnown RBP20.01■□□□□ 0.79
VPS53-211ENST00000571805 HIST1H3AP68431 136 aa20.01■□□□□ 0.79
VPS53-211ENST00000571805 HIST2H3PS2Q5TEC6 136 aa20.01■□□□□ 0.79
VPS53-211ENST00000571805 HIST2H3AQ71DI3 136 aa20.01■□□□□ 0.79
VPS53-211ENST00000571805 OR51T1Q8NGJ9 327 aa20.01■□□□□ 0.79
VPS53-211ENST00000571805 OR5D18Q8NGL1 313 aa20.01■□□□□ 0.79
VPS53-211ENST00000571805 GNRHR2Q96P88 292 aa20.01■□□□□ 0.79
VPS53-211ENST00000571805 RTBDNQ9BSG5 229 aaPredicted RBP20.01■□□□□ 0.79
VPS53-211ENST00000571805 ANGPTL4Q9BY76 406 aa20.01■□□□□ 0.79
VPS53-211ENST00000571805 CSAG2Q9Y5P2 127 aa20.01■□□□□ 0.79
VPS53-211ENST00000571805 IGHV3-15A0A0B4J1V0 119 aa20■□□□□ 0.79
VPS53-211ENST00000571805 A0A0U1RQV5 110 aa20■□□□□ 0.79
VPS53-211ENST00000571805 GP1BAP07359 652 aa20■□□□□ 0.79
VPS53-211ENST00000571805 THBS4P35443 961 aa20■□□□□ 0.79
VPS53-211ENST00000571805 SUPT4H1P63272 117 aaKnown RBP20■□□□□ 0.79
VPS53-211ENST00000571805 ARFRP1Q13795 201 aa20■□□□□ 0.79
VPS53-211ENST00000571805 UBE2V2Q15819 145 aa20■□□□□ 0.79
VPS53-211ENST00000571805 ELP2Q6IA86 826 aa20■□□□□ 0.79
VPS53-211ENST00000571805 CLEC18BQ6UXF7 455 aa20■□□□□ 0.79
VPS53-211ENST00000571805 OR5AP2Q8NGF4 316 aa20■□□□□ 0.79
VPS53-211ENST00000571805 OR5H2Q8NGV7 314 aa20■□□□□ 0.79
VPS53-211ENST00000571805 OR13G1Q8NGZ3 307 aa20■□□□□ 0.79
VPS53-211ENST00000571805 NTNG2Q96CW9 530 aa20■□□□□ 0.79
VPS53-211ENST00000571805 GHRLQ9UBU3 117 aa20■□□□□ 0.79
VPS53-211ENST00000571805 RTTNQ86VV8 2226 aa20■□□□□ 0.79
VPS53-211ENST00000571805 F5H5K5 113 aa20■□□□□ 0.79
VPS53-211ENST00000571805 ZIC3O60481 467 aa20■□□□□ 0.79
VPS53-211ENST00000571805 WDPCPO95876 746 aa20■□□□□ 0.79
VPS53-211ENST00000571805 CCL3P10147 92 aa20■□□□□ 0.79
VPS53-211ENST00000571805 GUCA1AP43080 201 aaPredicted RBP20■□□□□ 0.79
VPS53-211ENST00000571805 ZNF273Q14593 569 aa20■□□□□ 0.79
VPS53-211ENST00000571805 AADACL3Q5VUY0 350 aa20■□□□□ 0.79
VPS53-211ENST00000571805 OPN5Q6U736 354 aa20■□□□□ 0.79
VPS53-211ENST00000571805 Q6ZSR3 168 aa20■□□□□ 0.79
VPS53-211ENST00000571805 TMEM123Q8N131 208 aa20■□□□□ 0.79
VPS53-211ENST00000571805 ARMC10Q8N2F6 343 aa20■□□□□ 0.79
VPS53-211ENST00000571805 PNLDC1Q8NA58 520 aaKnown RBP20■□□□□ 0.79
VPS53-211ENST00000571805 NPRL2Q8WTW4 380 aa20■□□□□ 0.79
VPS53-211ENST00000571805 UCN2Q96RP3 112 aa20■□□□□ 0.79
VPS53-211ENST00000571805 FAM117AQ9C073 453 aa20■□□□□ 0.79
VPS53-211ENST00000571805 TAS2R3Q9NYW6 316 aa20■□□□□ 0.79
VPS53-211ENST00000571805 NXT1Q9UKK6 140 aaKnown RBP20■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms